-
1
-
-
0025108095
-
Retroviral nucleocapsid protein-metal ion interactions: Folding and sequence variants
-
Green, L. M., and J. M. Berg. 1990. Retroviral nucleocapsid protein-metal ion interactions: folding and sequence variants. Proc. Natl. Acad. Sci. USA. 87:6403-6407.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 6403-6407
-
-
Green, L.M.1
Berg, J.M.2
-
2
-
-
0019786215
-
Primary structure of the low molecular weight nucleic acid-binding proteins of murine leukemia viruses
-
Henderson, L. E., T. D. Copeland, R. C. Sowder, G. W. Smythers, and S. Oroszlan. 1981. Primary structure of the low molecular weight nucleic acid-binding proteins of murine leukemia viruses. J. Biol. Chem. 256:8400-8406.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 8400-8406
-
-
Henderson, L.E.1
Copeland, T.D.2
Sowder, R.C.3
Smythers, G.W.4
Oroszlan, S.5
-
3
-
-
0022695021
-
Potential metal-binding domains in nucleic acid binding proteins
-
Berg, J. M. 1986. Potential metal-binding domains in nucleic acid binding proteins. Science. 232:485-487.
-
(1986)
Science
, vol.232
, pp. 485-487
-
-
Berg, J.M.1
-
4
-
-
0023055867
-
Amino acid sequence homology in gag region of reverse transcribing elements and the coat protein gene of cauliflower mosaic virus
-
Covey, S. N. 1986. Amino acid sequence homology in gag region of reverse transcribing elements and the coat protein gene of cauliflower mosaic virus. Nucleic Acids Res. 14:623-633.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 623-633
-
-
Covey, S.N.1
-
5
-
-
23144448275
-
Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: Critical role in reverse transcription and molecular mechanism
-
Levin, J. G., J. Guo, I. Rouzina, and K. Musier-Forsyth. 2005. Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: critical role in reverse transcription and molecular mechanism. Prog. Nucleic Acid Res. Mol. Biol. 80:217-286.
-
(2005)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.80
, pp. 217-286
-
-
Levin, J.G.1
Guo, J.2
Rouzina, I.3
Musier-Forsyth, K.4
-
6
-
-
2242469712
-
Structure of the HIV-1 nucleocapsid protein bound to the SL3 ψ-RNA recognition element
-
De Guzman, R. N., Z. R. Wu, C. C. Stalling, L. Pappalardo, P. N. Borer, and M. F. Summers. 1998. Structure of the HIV-1 nucleocapsid protein bound to the SL3 ψ-RNA recognition element. Science. 279: 384-388.
-
(1998)
Science
, vol.279
, pp. 384-388
-
-
De Guzman, R.N.1
Wu, Z.R.2
Stalling, C.C.3
Pappalardo, L.4
Borer, P.N.5
Summers, M.F.6
-
7
-
-
0031679786
-
Nucleic-acid-chaperone activity of retroviral nucleocapsid proteins: Significance for viral replication
-
Rein, A., L. E. Henderson, and J. G. Levin. 1998. Nucleic-acid-chaperone activity of retroviral nucleocapsid proteins: significance for viral replication. Trends Biochem. Sci. 23:297-301.
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 297-301
-
-
Rein, A.1
Henderson, L.E.2
Levin, J.G.3
-
8
-
-
0030791407
-
A high affinity binding site for the HIV-1 nucleocapsid protein
-
Berglund, J. A., B. Charpentier, and M. Rosbash. 1997. A high affinity binding site for the HIV-1 nucleocapsid protein. Nucleic Acids Res. 25:1042-1049.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 1042-1049
-
-
Berglund, J.A.1
Charpentier, B.2
Rosbash, M.3
-
9
-
-
4944256277
-
Structural basis for packaging the dimeric genome of Moloney murine leukemia virus
-
D'Souza, V., and M. F. Summers. 2004. Structural basis for packaging the dimeric genome of Moloney murine leukemia virus. Nature. 431: 586-590.
-
(2004)
Nature
, vol.431
, pp. 586-590
-
-
D'Souza, V.1
Summers, M.F.2
-
10
-
-
0031935140
-
Sequence-specific binding of human immunodeficiency virus type 1 nucleocapsid protein to short oligonucleotides
-
Fisher, R. J., A. Rein, M. Fivash, M. A. Urbaneja, J. R. Casas-Finet, M. Medaglia, and L. E. Henderson. 1998. Sequence-specific binding of human immunodeficiency virus type 1 nucleocapsid protein to short oligonucleotides. J. Virol. 72:1902-1909.
-
(1998)
J. Virol.
, vol.72
, pp. 1902-1909
-
-
Fisher, R.J.1
Rein, A.2
Fivash, M.3
Urbaneja, M.A.4
Casas-Finet, J.R.5
Medaglia, M.6
Henderson, L.E.7
-
11
-
-
0029585377
-
First glimpses at structure-function relationships of the nucleocapsid protein of retroviruses
-
Darlix, J.-L., M. Lapadat-Tapolsky, H. de Rocquigny, and B. P. Roques. 1995. First glimpses at structure-function relationships of the nucleocapsid protein of retroviruses. J. Mol. Biol. 254:523-537.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 523-537
-
-
Darlix, J.-L.1
Lapadat-Tapolsky, M.2
De Rocquigny, H.3
Roques, B.P.4
-
12
-
-
0031106649
-
Ordered aggregation of ribonucleic acids by the human immunodeficiency virus type 1 nucleocapsid protein
-
Stoylov, S. P., C. Vuilleumier, E. Stoylova, H. De Rocquigny, B. P. Roques, D. Gerard, and Y. Mély. 1997. Ordered aggregation of ribonucleic acids by the human immunodeficiency virus type 1 nucleocapsid protein. Biopolymers. 41:301-312.
-
(1997)
Biopolymers
, vol.41
, pp. 301-312
-
-
Stoylov, S.P.1
Vuilleumier, C.2
Stoylova, E.3
De Rocquigny, H.4
Roques, B.P.5
Gerard, D.6
Mély, Y.7
-
13
-
-
0031910808
-
Analysis of the assembly function of the human immunodeficiency virus type 1 Gag protein nucleocapsid domain
-
Zhang, Y., H. Qian, Z. Love, and E. Barklis. 1998. Analysis of the assembly function of the human immunodeficiency virus type 1 Gag protein nucleocapsid domain. J. Virol. 72:1782.
-
(1998)
J. Virol.
, vol.72
, pp. 1782
-
-
Zhang, Y.1
Qian, H.2
Love, Z.3
Barklis, E.4
-
14
-
-
0025598002
-
Cis elements and trans-acting factors involved in the RNA dimerization of the human immunodeficiency virus HIV-1
-
Darlix, J.-L., C. Gabus, M. T. Nugeyre, F. Clavel, and F. Barré-Sinoussi. 1990. Cis elements and trans-acting factors involved in the RNA dimerization of the human immunodeficiency virus HIV-1. J. Mol. Biol. 216:689-699.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 689-699
-
-
Darlix, J.-L.1
Gabus, C.2
Nugeyre, M.T.3
Clavel, F.4
Barré-Sinoussi, F.5
-
15
-
-
0029798209
-
HIV-1 nucleocapsid protein induces "maturation" of dimeric retroviral RNA in vitro
-
Feng, Y. X., T. D. Copeland, L. E. Henderson, R. J. Gorelick, W. J. Bosche, J. G. Levin, and A. Rein. 1996. HIV-1 nucleocapsid protein induces "maturation" of dimeric retroviral RNA in vitro. Proc. Natl. Acad. Sci. USA. 93:7577-7581.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 7577-7581
-
-
Feng, Y.X.1
Copeland, T.D.2
Henderson, L.E.3
Gorelick, R.J.4
Bosche, W.J.5
Levin, J.G.6
Rein, A.7
-
16
-
-
0027325412
-
Identification of a binding site for the human immunodeficiency virus type 1 nucleocapsid protein
-
Sakaguchi, K., N. Zambrano, E. T. Baldwin, B. A. Shapiro, J. W. Erickson, J. G. Omichinski, G. M. Clore, A. M. Gronenborn, and E. Appella. 1993. Identification of a binding site for the human immunodeficiency virus type 1 nucleocapsid protein. Proc. Natl. Acad. Sci. USA. 90:5219-5223.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 5219-5223
-
-
Sakaguchi, K.1
Zambrano, N.2
Baldwin, E.T.3
Shapiro, B.A.4
Erickson, J.W.5
Omichinski, J.G.6
Clore, G.M.7
Gronenborn, A.M.8
Appella, E.9
-
17
-
-
0028338652
-
Characterization of human immunodeficiency virus type 1 dimeric RNA from wild-type and protease-defective virions
-
Fu, W., R. J. Gorelick, and A. Rein. 1994. Characterization of human immunodeficiency virus type 1 dimeric RNA from wild-type and protease-defective virions. J. Virol. 68:5013-5018.
-
(1994)
J. Virol.
, vol.68
, pp. 5013-5018
-
-
Fu, W.1
Gorelick, R.J.2
Rein, A.3
-
18
-
-
0030480326
-
NCp7 activates HIV-1 Lai RNA dimerization by converting a transient loop-loop complex into a stable dimer
-
Muriaux, D., H. De Rocquigny, B. P. Roques, and J. Paoletti. 1996. NCp7 activates HIV-1 Lai RNA dimerization by converting a transient loop-loop complex into a stable dimer. J. Biol. Chem. 271:33686-33692.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 33686-33692
-
-
Muriaux, D.1
De Rocquigny, H.2
Roques, B.P.3
Paoletti, J.4
-
19
-
-
0033582291
-
Intra-tRNA distance measurements for nucleocapsid protein-dependent tRNA unwinding during priming of HIV reverse transcription
-
Chan, B., K. Weidemaier, W. T. Yip, P. F. Barbara, and K. Musier-Forsyth. 1999. Intra-tRNA distance measurements for nucleocapsid protein-dependent tRNA unwinding during priming of HIV reverse transcription. Proc. Natl. Acad. Sci. USA. 96:459-464.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 459-464
-
-
Chan, B.1
Weidemaier, K.2
Yip, W.T.3
Barbara, P.F.4
Musier-Forsyth, K.5
-
20
-
-
0032928073
-
The human immunodeficiency virus type 1 Gag polyprotein has nucleic acid chaperone activity: Possible role in dimerization of genomic RNA and placement of tRNA on the primer binding site
-
Feng, Y. X., S. Campbell, D. Harvin, B. Ehresmann, C. Ehresmann, and A. Rein. 1999. The human immunodeficiency virus type 1 Gag polyprotein has nucleic acid chaperone activity: possible role in dimerization of genomic RNA and placement of tRNA on the primer binding site. J. Virol. 73:4251-4256.
-
(1999)
J. Virol.
, vol.73
, pp. 4251-4256
-
-
Feng, Y.X.1
Campbell, S.2
Harvin, D.3
Ehresmann, B.4
Ehresmann, C.5
Rein, A.6
-
21
-
-
0026628854
-
Viral RNA annealing activities of human immunodeficiency virus type 1 nucleocapsid protein require only peptide domains outside the zinc fingers
-
De Rocquigny, H., C. Gabus, A. Vincent, M. C. Fournié-Zaluski, B. Roques, and J. L. Darlix. 1992. Viral RNA annealing activities of human immunodeficiency virus type 1 nucleocapsid protein require only peptide domains outside the zinc fingers. Proc. Natl. Acad. Sci. USA. 89:6472-6476.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 6472-6476
-
-
De Rocquigny, H.1
Gabus, C.2
Vincent, A.3
Fournié-Zaluski, M.C.4
Roques, B.5
Darlix, J.L.6
-
22
-
-
0032993634
-
Molecular requirements for human immunodeficiency virus type 1 plus-strand transfer: Analysis in reconstituted and endogenous reverse transcription systems
-
Wu, T., J. Guo, J. Bess, L. E. Henderson, and J. G. Levin. 1999. Molecular requirements for human immunodeficiency virus type 1 plus-strand transfer: analysis in reconstituted and endogenous reverse transcription systems. J. Virol. 73:4794-4805.
-
(1999)
J. Virol.
, vol.73
, pp. 4794-4805
-
-
Wu, T.1
Guo, J.2
Bess, J.3
Henderson, L.E.4
Levin, J.G.5
-
23
-
-
0033803461
-
Zinc finger structures in the human immunodeficiency virus type 1 nucleocapsid protein facilitate efficient minus- and plus-strand transfer
-
Guo, J., T. Wu, J. Anderson, B. F. Kane, D. G. Johnson, R. J. Gorelick, L. E. Henderson, and J. G. Levin. 2000. Zinc finger structures in the human immunodeficiency virus type 1 nucleocapsid protein facilitate efficient minus- and plus-strand transfer. J. Virol. 74:8980-8988.
-
(2000)
J. Virol.
, vol.74
, pp. 8980-8988
-
-
Guo, J.1
Wu, T.2
Anderson, J.3
Kane, B.F.4
Johnson, D.G.5
Gorelick, R.J.6
Henderson, L.E.7
Levin, J.G.8
-
24
-
-
0034622638
-
A mechanism for plus-strand transfer enhancement by the HIV-1 nucleocapsid protein during reverse transcription
-
Johnson, P. E., R. B. Turner, Z. R. Wu, L. Hairston, J. Guo, J. G. Levin, and M. F. Summers. 2000. A mechanism for plus-strand transfer enhancement by the HIV-1 nucleocapsid protein during reverse transcription. Biochemistry. 39:9084-9091.
-
(2000)
Biochemistry
, vol.39
, pp. 9084-9091
-
-
Johnson, P.E.1
Turner, R.B.2
Wu, Z.R.3
Hairston, L.4
Guo, J.5
Levin, J.G.6
Summers, M.F.7
-
25
-
-
0036304603
-
The HIV plus-strand transfer reaction: Determination of replication-competent intermediates and identification of a novel lentiviral element, the primer over-extension sequence
-
Muthuswami, R., J. Chen, B. P. Burnett, R. L. Thimmig, N. Janjic, and C. S. McHenry. 2002. The HIV plus-strand transfer reaction: determination of replication-competent intermediates and identification of a novel lentiviral element, the primer over-extension sequence. J. Mol. Biol. 315:311-323.
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 311-323
-
-
Muthuswami, R.1
Chen, J.2
Burnett, B.P.3
Thimmig, R.L.4
Janjic, N.5
McHenry, C.S.6
-
26
-
-
0028113905
-
Human immunodeficiency virus nucleocapsid protein accelerates strand transfer of the terminally redundant sequences involved in reverse transcription
-
You, J. C., and C. S. McHenry. 1994. Human immunodeficiency virus nucleocapsid protein accelerates strand transfer of the terminally redundant sequences involved in reverse transcription. J. Biol. Chem. 269: 31491-31495.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 31491-31495
-
-
You, J.C.1
McHenry, C.S.2
-
27
-
-
0032491180
-
Actinomycin D inhibition of DNA strand transfer reactions catalyzed by HIV-1 reverse transcriptase and nucleocapsid protein
-
Davis, W. R., S. Gabbara, D. Hupe, and J. A. Peliska. 1998. Actinomycin D inhibition of DNA strand transfer reactions catalyzed by HIV-1 reverse transcriptase and nucleocapsid protein. Biochemistry. 37:14213-14221.
-
(1998)
Biochemistry
, vol.37
, pp. 14213-14221
-
-
Davis, W.R.1
Gabbara, S.2
Hupe, D.3
Peliska, J.A.4
-
28
-
-
0037489501
-
Secondary structure in the nucleic acid affects the rate of HIV-1 nucleocapsid-mediated strand annealing
-
Golinelli, M-P., and S. H. Hughes. 2003. Secondary structure in the nucleic acid affects the rate of HIV-1 nucleocapsid-mediated strand annealing. Biochemistry. 42:8153-8162.
-
(2003)
Biochemistry
, vol.42
, pp. 8153-8162
-
-
Golinelli, M.-P.1
Hughes, S.H.2
-
29
-
-
0031926679
-
Actinomycin D inhibits human immunodeficiency virus type 1 minus-strand transfer in in vitro and endogenous reverse transcriptase assays
-
Guo, J., T. Wu, J. Bess, L. E. Henderson, and J. G. Levin. 1998. Actinomycin D inhibits human immunodeficiency virus type 1 minus-strand transfer in in vitro and endogenous reverse transcriptase assays. J. Virol. 72:6716-6724.
-
(1998)
J. Virol.
, vol.72
, pp. 6716-6724
-
-
Guo, J.1
Wu, T.2
Bess, J.3
Henderson, L.E.4
Levin, J.G.5
-
30
-
-
0036226153
-
Subtle alterations of the native zinc finger structures have dramatic effects on the nucleic acid chaperone activity of human immunodeficiency virus type 1 nucleocapsid protein
-
Guo, J., T. Wu, B. F. Kane, D. G. Johnson, L. E. Henderson, R. J. Gorelick, and J. G. Levin. 2002. Subtle alterations of the native zinc finger structures have dramatic effects on the nucleic acid chaperone activity of human immunodeficiency virus type 1 nucleocapsid protein. J. Virol. 76:4370-4378.
-
(2002)
J. Virol.
, vol.76
, pp. 4370-4378
-
-
Guo, J.1
Wu, T.2
Kane, B.F.3
Johnson, D.G.4
Henderson, L.E.5
Gorelick, R.J.6
Levin, J.G.7
-
31
-
-
0037260333
-
Nucleic acid conformational changes essential for HIV-1 nucleocapsid protein-mediated inhibition of self-priming in minus-strand transfer
-
Hong, M. K., E. J. Harbron, D. B. O'Connor, J. Guo, P. F. Barbara, J. G. Levin, and K. Musier-Forsyth. 2003. Nucleic acid conformational changes essential for HIV-1 nucleocapsid protein-mediated inhibition of self-priming in minus-strand transfer. J. Mol. Biol. 325:1-10.
-
(2003)
J. Mol. Biol.
, vol.325
, pp. 1-10
-
-
Hong, M.K.1
Harbron, E.J.2
O'Connor, D.B.3
Guo, J.4
Barbara, P.F.5
Levin, J.G.6
Musier-Forsyth, K.7
-
32
-
-
0029044016
-
Analysis of the nucleic acid annealing activities of nucleocapsid protein from HIV-1
-
Lapadat-Tapolsky, M., C. Pernelle, C. Borie, and J.-L. Darlix. 1995. Analysis of the nucleic acid annealing activities of nucleocapsid protein from HIV-1. Nucleic Acids Res. 23:2434-2441.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 2434-2441
-
-
Lapadat-Tapolsky, M.1
Pernelle, C.2
Borie, C.3
Darlix, J.-L.4
-
33
-
-
0026093989
-
Detailed mutational analysis of TAR RNA: Critical spacing between the bulge and loop recognition domains
-
Berkhout, B., and K.-T. Jeang. 1991. Detailed mutational analysis of TAR RNA: critical spacing between the bulge and loop recognition domains. Nucleic Acids Res. 19:6169-6176.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 6169-6176
-
-
Berkhout, B.1
Jeang, K.-T.2
-
34
-
-
0027479628
-
Functional sites in the 5′ region of human immunodeficiency virus type 1 RNA form defined structural domains
-
Baudin, F., R. Marquet, C. Isel, J.-L. Darlix, B. Ehresmann, and C. Ehresmann. 1993. Functional sites in the 5′ region of human immunodeficiency virus type 1 RNA form defined structural domains. J. Mol. Biol. 229:382-397.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 382-397
-
-
Baudin, F.1
Marquet, R.2
Isel, C.3
Darlix, J.-L.4
Ehresmann, B.5
Ehresmann, C.6
-
35
-
-
0031007620
-
Human immunodeficiency virus type 1 nucleocapsid protein promotes efficient strand transfer and specific viral DNA synthesis by inhibiting TAR-dependent self-priming from minus-strand strong-stop DNA
-
Guo, J., L. E. Henderson, J. Bess, B. Kane, and J. G. Levin. 1997. Human immunodeficiency virus type 1 nucleocapsid protein promotes efficient strand transfer and specific viral DNA synthesis by inhibiting TAR-dependent self-priming from minus-strand strong-stop DNA. J. Virol. 71:5178-5188.
-
(1997)
J. Virol.
, vol.71
, pp. 5178-5188
-
-
Guo, J.1
Henderson, L.E.2
Bess, J.3
Kane, B.4
Levin, J.G.5
-
36
-
-
0033799017
-
Human immunodeficiency virus type 1 nucleocapsid protein can prevent self-priming of minus-strand strong stop DNA by promoting the annealing of short oligonucleotides to hairpin sequences
-
Driscoll, M. D., and S. H. Hughes. 2000. Human immunodeficiency virus type 1 nucleocapsid protein can prevent self-priming of minus-strand strong stop DNA by promoting the annealing of short oligonucleotides to hairpin sequences. J. Virol. 74:8785-8792.
-
(2000)
J. Virol.
, vol.74
, pp. 8785-8792
-
-
Driscoll, M.D.1
Hughes, S.H.2
-
37
-
-
0036307597
-
HIV-1 nucleocapsid protein as a nucleic acid chaperone: Spectroscopic study of its helix-destabilizing properties, structural binding specificity, and annealing activity
-
Urbaneja, M. A., M. Wu, J. R. Casas-Finet, and R. L. Karpel. 2002. HIV-1 nucleocapsid protein as a nucleic acid chaperone: spectroscopic study of its helix-destabilizing properties, structural binding specificity, and annealing activity. J. Mol. Biol. 318:749-764.
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 749-764
-
-
Urbaneja, M.A.1
Wu, M.2
Casas-Finet, J.R.3
Karpel, R.L.4
-
38
-
-
0037459094
-
Destabilization of the HIV-1 complementary sequence of TAR by the nucleocapsid protein through activation of conformational fluctuations
-
Azoulay, J., J. P. Clamme, J. L. Darlix, B. P. Roques, and Y. Mély. 2003. Destabilization of the HIV-1 complementary sequence of TAR by the nucleocapsid protein through activation of conformational fluctuations. J. Mol. Biol. 326:691-700.
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 691-700
-
-
Azoulay, J.1
Clamme, J.P.2
Darlix, J.L.3
Roques, B.P.4
Mély, Y.5
-
39
-
-
0037453234
-
Impact of the terminal bulges of HIV-1 cTAR DNA on its stability and the destabilizing activity of the nucleocapsid protein NCp7
-
Beltz, H., J. Azoulay, S. Bernacchi, J. P. Clamme, D. Ficheux, B. Roques, J. L. Darlix, and Y. Mély. 2003. Impact of the terminal bulges of HIV-1 cTAR DNA on its stability and the destabilizing activity of the nucleocapsid protein NCp7. J. Mol. Biol. 328:95-108.
-
(2003)
J. Mol. Biol.
, vol.328
, pp. 95-108
-
-
Beltz, H.1
Azoulay, J.2
Bernacchi, S.3
Clamme, J.P.4
Ficheux, D.5
Roques, B.6
Darlix, J.L.7
Mély, Y.8
-
40
-
-
0036298272
-
HIV-1 nucleocapsid protein activates transient melting of least stable parts of the secondary structure of TAR and its complementary sequence
-
Bernacchi, S., S. Stoylov, E. Piémont, D. Ficheux, B. P. Roques, J. L. Darlix, and Y. Mély. 2002. HIV-1 nucleocapsid protein activates transient melting of least stable parts of the secondary structure of TAR and its complementary sequence. J. Mol. Biol. 317:385-399.
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 385-399
-
-
Bernacchi, S.1
Stoylov, S.2
Piémont, E.3
Ficheux, D.4
Roques, B.P.5
Darlix, J.L.6
Mély, Y.7
-
41
-
-
16644394128
-
Secondary structure and secondary structure dynamics of DNA hairpins complexed with HIV-1 NC protein
-
Cosa, G., E. J. Harbron, Y. Zeng, H. W. Liu, D. B. O'Connor, C. Eta-Hosokawa, K. Musier-Forsyth, and P. F. Barbara. 2004. Secondary structure and secondary structure dynamics of DNA hairpins complexed with HIV-1 NC protein. Biophys. J. 87:2759-2767.
-
(2004)
Biophys. J.
, vol.87
, pp. 2759-2767
-
-
Cosa, G.1
Harbron, E.J.2
Zeng, Y.3
Liu, H.W.4
O'Connor, D.B.5
Eta-Hosokawa, C.6
Musier-Forsyth, K.7
Barbara, P.F.8
-
42
-
-
85030728278
-
Evidence for non-two-state kinetics in the nucleocapsid protein chaperoned opening of DNA hairpins
-
In press
-
Cosa, G., Y. Zeng, H. W. Liu, C. F. Landes, K. Musier-Forsyth, and P. F. Barbara. 2005. Evidence for non-two-state kinetics in the nucleocapsid protein chaperoned opening of DNA hairpins. J. Phys. Chem. B. In press.
-
(2005)
J. Phys. Chem. B.
-
-
Cosa, G.1
Zeng, Y.2
Liu, H.W.3
Landes, C.F.4
Musier-Forsyth, K.5
Barbara, P.F.6
-
43
-
-
0034903425
-
Structural features in the HIV-1 repeat region facilitate strand transfer during reverse transcription
-
Berkhout, B., N. L. Vastenhouw, B. I. F. Klasens, and H. Huthoff. 2001. Structural features in the HIV-1 repeat region facilitate strand transfer during reverse transcription. RNA. 7:1097-1114.
-
(2001)
RNA
, vol.7
, pp. 1097-1114
-
-
Berkhout, B.1
Vastenhouw, N.L.2
Klasens, B.I.F.3
Huthoff, H.4
-
44
-
-
0033959583
-
Structural requirement for the two-step dimerization of human immunodeficiency virus type 1 genome
-
Takahashi, K. I., S. Baba, P. Chattopadhyay, Y. Koyanagi, N. Yamamoto, H. Takaku, and G. Kawai. 2000. Structural requirement for the two-step dimerization of human immunodeficiency virus type 1 genome. RNA. 6:96-102.
-
(2000)
RNA
, vol.6
, pp. 96-102
-
-
Takahashi, K.I.1
Baba, S.2
Chattopadhyay, P.3
Koyanagi, Y.4
Yamamoto, N.5
Takaku, H.6
Kawai, G.7
-
45
-
-
2542496713
-
Role of the trans-activation response element in dimerization of HIV-1 RNA
-
Andersen, E. S., S. A. Contera, B. Knudsen, C. K. Damgaard, F. Besenbacher, and J. Kjems. 2004. Role of the trans-activation response element in dimerization of HIV-1 RNA. J. Biol. Chem. 279:22243-22249.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 22243-22249
-
-
Andersen, E.S.1
Contera, S.A.2
Knudsen, B.3
Damgaard, C.K.4
Besenbacher, F.5
Kjems, J.6
-
46
-
-
0028239204
-
Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro
-
Skripkin, E., J. Paillart, R. Marquet, B. Ehresmann, and C. Ehresmann. 1994. Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro. Proc. Natl. Acad. Sci. USA. 91: 4945-4949.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 4945-4949
-
-
Skripkin, E.1
Paillart, J.2
Marquet, R.3
Ehresmann, B.4
Ehresmann, C.5
-
47
-
-
0037126724
-
Mechanism of nucleocapsid protein catalyzed structural isomerization of the dimerization initiation site of HIV-1
-
Rist, M. J., and J. P. Marino. 2002. Mechanism of nucleocapsid protein catalyzed structural isomerization of the dimerization initiation site of HIV-1. Biochemistry. 41:14762-14770.
-
(2002)
Biochemistry
, vol.41
, pp. 14762-14770
-
-
Rist, M.J.1
Marino, J.P.2
-
48
-
-
0031591383
-
The structure of an RNA "kissing" hairpin complex of the HIV TAR hairpin loop and its complement
-
Chang, K. Y., and I. Tinoco. 1997. The structure of an RNA "kissing" hairpin complex of the HIV TAR hairpin loop and its complement. J. Mol. Biol. 269:52-66.
-
(1997)
J. Mol. Biol.
, vol.269
, pp. 52-66
-
-
Chang, K.Y.1
Tinoco, I.2
-
49
-
-
0032531696
-
Mapping of a protein-RNA kissing hairpin interface: Rom and Tar-Tar
-
Comolli, L. R., J. G. Pelton, and I. Tinoco. 1998. Mapping of a protein-RNA kissing hairpin interface: Rom and Tar-Tar. Nucleic Acids Res. 26:4688-4695.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 4688-4695
-
-
Comolli, L.R.1
Pelton, J.G.2
Tinoco, I.3
-
50
-
-
0028168585
-
Characterization of a "kissing" hairpin complex derived from the human immunodeficiency virus genome
-
Chang, K., and I. Tinoco, Jr. 1994. Characterization of a "kissing" hairpin complex derived from the human immunodeficiency virus genome. Proc. Natl. Acad. Sci. USA. 91:8705-8709.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 8705-8709
-
-
Chang, K.1
Tinoco Jr., I.2
-
51
-
-
0035140955
-
Fluorescence-quenching phenomenon by photoinduced electron transfer between a fluorescent dye and a nucleotide base
-
Torimura, M., S. Kurata, K. Yamada, T. Yokomaku, Y. Kamagata, T. Kanagawa, and R. Kurane. 2001. Fluorescence-quenching phenomenon by photoinduced electron transfer between a fluorescent dye and a nucleotide base. Anal. Sci. 17:155-160.
-
(2001)
Anal. Sci.
, vol.17
, pp. 155-160
-
-
Torimura, M.1
Kurata, S.2
Yamada, K.3
Yokomaku, T.4
Kamagata, Y.5
Kanagawa, T.6
Kurane, R.7
-
52
-
-
0035869965
-
Fluorescent quenching-based quantitative detection of specific DNA/RNA using a BODIPY((R)) FL-labeled probe or primer
-
Kurata, S., T. Kanagawa, K. Yamada, M. Torimura, T. Yokomaku, Y. Kamagata, and R. Kurane. 2001. Fluorescent quenching-based quantitative detection of specific DNA/RNA using a BODIPY((R)) FL-labeled probe or primer. Nucleic Acids Res. 29:E34.
-
(2001)
Nucleic Acids Res.
, vol.29
-
-
Kurata, S.1
Kanagawa, T.2
Yamada, K.3
Torimura, M.4
Yokomaku, T.5
Kamagata, Y.6
Kurane, R.7
-
53
-
-
0025103048
-
A cleavage method which minimizes side reactions following Fmoc solid phase peptide synthesis
-
King, D. S., C. G. Fields, and G. B. Fields. 1990. A cleavage method which minimizes side reactions following Fmoc solid phase peptide synthesis. Int. J. Pept. Protein Res. 26:255-266.
-
(1990)
Int. J. Pept. Protein Res.
, vol.26
, pp. 255-266
-
-
King, D.S.1
Fields, C.G.2
Fields, G.B.3
-
54
-
-
0035366378
-
Single-molecule fluorescence methods for the study of nucleic acids
-
Ha, T. 2001. Single-molecule fluorescence methods for the study of nucleic acids. Curr. Opin. Struct. Biol. 11:287-292.
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 287-292
-
-
Ha, T.1
-
55
-
-
0025104145
-
Mechanochemical coupling in actomyosin energy transduction studied by in vitro movement assay
-
Harada, Y., K. Sakurada, T. Aoki, D. D. Thomas, and T. Yanagida. 1990. Mechanochemical coupling in actomyosin energy transduction studied by in vitro movement assay. J. Mol. Biol. 216:49-68.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 49-68
-
-
Harada, Y.1
Sakurada, K.2
Aoki, T.3
Thomas, D.D.4
Yanagida, T.5
-
56
-
-
0002736602
-
Single molecule spectroscopy in oxygen depleted polymer films
-
English, D. S., A. Furube, and P. F. Barbara. 2000. Single molecule spectroscopy in oxygen depleted polymer films. Chem. Phys. Lett. 324: 15-19.
-
(2000)
Chem. Phys. Lett.
, vol.324
, pp. 15-19
-
-
English, D.S.1
Furube, A.2
Barbara, P.F.3
-
57
-
-
0000217925
-
Classifying the photophysical dynamics of single- and multiple-chromophoric molecules by single molecule spectroscopy
-
Yip, W. T., D. Hu, J. Yu, D. A. Vanden Bout, and P. F. Barbara. 1998. Classifying the photophysical dynamics of single- and multiple-chromophoric molecules by single molecule spectroscopy. J. Phys. Chem. A. 102:7564-7575.
-
(1998)
J. Phys. Chem. A.
, vol.102
, pp. 7564-7575
-
-
Yip, W.T.1
Hu, D.2
Yu, J.3
Vanden Bout, D.A.4
Barbara, P.F.5
-
58
-
-
0028128759
-
2+ HIV-1 nucleocapsid protein are modulated by COOH-terminal processing
-
2+ HIV-1 nucleocapsid protein are modulated by COOH-terminal processing. J. Biol. Chem. 269:22538-22546.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 22538-22546
-
-
Khan, R.1
Giedroc, D.P.2
-
59
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31:3406-3415.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
60
-
-
0002287019
-
-
J. Barciszewski and B. F. C. Clark, editors. Kluwer Academic Publishers, Dordrecht, The Netherlands
-
Zuker, M., D. H. Mathews, and D. H. Turner. 1999. Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide. J. Barciszewski and B. F. C. Clark, editors. Kluwer Academic Publishers, Dordrecht, The Netherlands.
-
(1999)
Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide
-
-
Zuker, M.1
Mathews, D.H.2
Turner, D.H.3
-
61
-
-
0032539693
-
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
-
SantaLucia, J., Jr. 1998. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl. Acad. Sci. USA. 95:1460-1465.
-
(1998)
Proc. Natl. Acad. Sci. USA.
, vol.95
, pp. 1460-1465
-
-
Santalucia Jr., J.1
|