-
1
-
-
0031587827
-
Crystal structure of a pol α family replication DNA polymerase from bacteriophage RB69
-
Wang, J., Sattar, A. K. M. A., Wang, C. C., Karam, J. D., Konigsberg, W. H., and Steitz, T. A. (1997) Crystal structure of a pol α family replication DNA polymerase from bacteriophage RB69, Cell 89, 1087-1099.
-
(1997)
Cell
, vol.89
, pp. 1087-1099
-
-
Wang, J.1
Sattar, A.K.M.A.2
Wang, C.C.3
Karam, J.D.4
Konigsberg, W.H.5
Steitz, T.A.6
-
2
-
-
0032692565
-
Building a replisome from interacting pieces: Sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex
-
Shamoo, Y., and Steitz, T. A. (1999) Building a replisome from interacting pieces: Sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex, Cell 99, 155-166.
-
(1999)
Cell
, vol.99
, pp. 155-166
-
-
Shamoo, Y.1
Steitz, T.A.2
-
3
-
-
0032535528
-
Crystal structures of open and closed forms of binary and ternary complexes of Thermus aquaticus DNA polymerase I: Structural basis for nucleotide incorporation
-
Li, Y., Korolev, S., and Waksman, G. (1998) Crystal structures of open and closed forms of binary and ternary complexes of Thermus aquaticus DNA polymerase I: Structural basis for nucleotide incorporation, EMBO J. 17, 7514-7525.
-
(1998)
EMBO J.
, vol.17
, pp. 7514-7525
-
-
Li, Y.1
Korolev, S.2
Waksman, G.3
-
4
-
-
0032518398
-
Crystal structure of bacteriophage T7 DNA replication complex at 2.2 Å resolution
-
Doublié, S., Tabor, S., Long, A., Richardson, C. C., and Ellenberger, T. (1998) Crystal structure of bacteriophage T7 DNA replication complex at 2.2 Å resolution, Nature 391, 251-258.
-
(1998)
Nature
, vol.391
, pp. 251-258
-
-
Doublié, S.1
Tabor, S.2
Long, A.3
Richardson, C.C.4
Ellenberger, T.5
-
5
-
-
0035369086
-
Structure of the replication complex of a pol α family DNA polymerase
-
Franklin, M. C., Wang, J., and Steitz, T. A. (2001) Structure of the replication complex of a pol α family DNA polymerase, Cell 105, 657-667.
-
(2001)
Cell
, vol.105
, pp. 657-667
-
-
Franklin, M.C.1
Wang, J.2
Steitz, T.A.3
-
6
-
-
2342537864
-
Crystallographic snapshots of a replication DNA polymerase encountering an abasic site
-
Hogg, M., Wallace, S. S., and Doublié, S. (2004) Crystallographic snapshots of a replication DNA polymerase encountering an abasic site, EMBO J. 23, 1483-1993.
-
(2004)
EMBO J.
, vol.23
, pp. 1483-1993
-
-
Hogg, M.1
Wallace, S.S.2
Doublié, S.3
-
7
-
-
2342484512
-
Lesion (in)tolerance reveals insights in DNA replication fidelity
-
Freisinger, E., Grollman, A. P., Miller, H., and Kisker, C. (2004) Lesion (in)tolerance reveals insights in DNA replication fidelity, EMBO J. 23, 1494-1505.
-
(2004)
EMBO J.
, vol.23
, pp. 1494-1505
-
-
Freisinger, E.1
Grollman, A.P.2
Miller, H.3
Kisker, C.4
-
8
-
-
4544273926
-
Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase
-
Hsu, G. W., Ober, M., Carrell, T., and Beese, L. S. (2004) Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase, Nature 431, 217-221.
-
(2004)
Nature
, vol.431
, pp. 217-221
-
-
Hsu, G.W.1
Ober, M.2
Carrell, T.3
Beese, L.S.4
-
9
-
-
1642588255
-
Structures of mismatch replication errors observed in a DNA polymerase
-
Johnson, S. J., and Beese, L. S. (2004) Structures of mismatch replication errors observed in a DNA polymerase, Cell 116, 803-816.
-
(2004)
Cell
, vol.116
, pp. 803-816
-
-
Johnson, S.J.1
Beese, L.S.2
-
10
-
-
8544278025
-
DNA polymerase fidelity: Kinetics, structure, and checkpoints
-
Joyce, C. M., and Benkovic, S. J. (2004) DNA polymerase fidelity: Kinetics, structure, and checkpoints, Biochemistry 43, 14317-14324.
-
(2004)
Biochemistry
, vol.43
, pp. 14317-14324
-
-
Joyce, C.M.1
Benkovic, S.J.2
-
11
-
-
0037154094
-
Determinants of DNA mismatch recognition within the polymerase domain of the Klenow fragment
-
Thompson, E. H., Z., Bailey, M. F., van der Schans, D. J. C., Joyce, C. M., and Millar, D. P. (2002) Determinants of DNA mismatch recognition within the polymerase domain of the Klenow fragment, Biochemistry 41, 713-722.
-
(2002)
Biochemistry
, vol.41
, pp. 713-722
-
-
Thompson, E.H.Z.1
Bailey, M.F.2
Van Der Schans, D.J.C.3
Joyce, C.M.4
Millar, D.P.5
-
12
-
-
0000812659
-
Base pairing and mutagenesis: Observation of a protonated base pair between 2-aminopurine and cytosine in an oligonucleotide by proton NMR
-
Sowers, L. C., Fazakerley, G. V., Eritja, R., Kaplan, B. E., and Goodman, M. F. (1986) Base pairing and mutagenesis: Observation of a protonated base pair between 2-aminopurine and cytosine in an oligonucleotide by proton NMR, Proc, Natl. Acad. Sci. U.S.A. 83, 5434-5438.
-
(1986)
Proc. Natl. Acad. Sci. U.S.A.
, vol.83
, pp. 5434-5438
-
-
Sowers, L.C.1
Fazakerley, G.V.2
Eritja, R.3
Kaplan, B.E.4
Goodman, M.F.5
-
13
-
-
0019879372
-
Nonrandom substitution of 2-aminopurine for adenine during deoxyribonucleic acid synthesis in vitro
-
Pless, R. C., Levitt, L. M., and Bessman, M. J. (1981) Nonrandom substitution of 2-aminopurine for adenine during deoxyribonucleic acid synthesis in vitro, Biochemistry 20, 6235-6244.
-
(1981)
Biochemistry
, vol.20
, pp. 6235-6244
-
-
Pless, R.C.1
Levitt, L.M.2
Bessman, M.J.3
-
14
-
-
0027493457
-
Influence of 5′-nearest neighbors on the insertion kinetics of the fluorescent nucleotide analog 2-aminopurine by Klenow fragment
-
Bloom, L. B., Otto, M. R., Beechem, J. M., and Goodman, M. F. (1993) Influence of 5′-nearest neighbors on the insertion kinetics of the fluorescent nucleotide analog 2-aminopurine by Klenow fragment, Biochemistry 32, 11247-11258.
-
(1993)
Biochemistry
, vol.32
, pp. 11247-11258
-
-
Bloom, L.B.1
Otto, M.R.2
Beechem, J.M.3
Goodman, M.F.4
-
15
-
-
0029085240
-
The nucleotide analog 2-aminopurine as a spectroscopic probe of nucleotide incorporation by the Klenow fragment of Escherichia coli polymerase I and bacteriophage T4 DNA polymerase
-
Prey, M. A., Sowers, L. C., Millar, D. P., and Benkovic, S. J. (1995) The nucleotide analog 2-aminopurine as a spectroscopic probe of nucleotide incorporation by the Klenow fragment of Escherichia coli polymerase I and bacteriophage T4 DNA polymerase, Biochemistry 34, 9185-9192.
-
(1995)
Biochemistry
, vol.34
, pp. 9185-9192
-
-
Prey, M.A.1
Sowers, L.C.2
Millar, D.P.3
Benkovic, S.J.4
-
16
-
-
0037006992
-
Using 2-aminopurine fluorescence to detect base unstacking in the template strand during nucleotide incorporation by the bacteriophage T4 DNA polymerase
-
Mandal, S. S., Fidalgo da Silva, and Reha-Krantz, L. J. (2002) Using 2-aminopurine fluorescence to detect base unstacking in the template strand during nucleotide incorporation by the bacteriophage T4 DNA polymerase, Biochemistry 41, 4399-4406.
-
(2002)
Biochemistry
, vol.41
, pp. 4399-4406
-
-
Mandal, S.S.1
Fidalgo Da Silva2
Reha-Krantz, L.J.3
-
17
-
-
0037174863
-
Using 2-aminopurine fluorescence to measure incorporation of incorrect nucleotides by wild type and mutant bacteriophage T4 DNA polymerases
-
Fidalgo da Silva, E., Mandal, S. S., and Reha-Krantz, L. J. (2002) Using 2-aminopurine fluorescence to measure incorporation of incorrect nucleotides by wild type and mutant bacteriophage T4 DNA polymerases, J. Biol. Chem. 277, 40640-40649.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 40640-40649
-
-
Fidalgo Da Silva, E.1
Mandal, S.S.2
Reha-Krantz, L.J.3
-
18
-
-
0017652144
-
Studies on the biochemical basis of spontaneous mutation. V. Effect of temperature on mutation frequency
-
Bessman, M. J., and Reha-Krantz, L. J. (1977) Studies on the biochemical basis of spontaneous mutation. V. Effect of temperature on mutation frequency, J. Mol. Biol. 116, 115-123.
-
(1977)
J. Mol. Biol.
, vol.116
, pp. 115-123
-
-
Bessman, M.J.1
Reha-Krantz, L.J.2
-
19
-
-
0028246076
-
Pre-steady-state kinetic analysis of sequence-dependent nucleotide excision by the 3′-exonuclease activity of bacteriophage T4 DNA polymerase
-
Bloom, L. B., Otto, M. R., Eritja, R., Reha-Krantz, L. J., Goodman, M. F., and Beechem, J. M. (1994) Pre-steady-state kinetic analysis of sequence-dependent nucleotide excision by the 3′-exonuclease activity of bacteriophage T4 DNA polymerase, Biochemistry 33, 7576-7586.
-
(1994)
Biochemistry
, vol.33
, pp. 7576-7586
-
-
Bloom, L.B.1
Otto, M.R.2
Eritja, R.3
Reha-Krantz, L.J.4
Goodman, M.F.5
Beechem, J.M.6
-
20
-
-
0014669561
-
Fluorescence studies of nucleotides and polynucleotides. I. Formycin, 2-aminopurine riboside, 2,6-diaminopurine riboside, and their derivatives
-
Ward, D. C., Reich, E., and Stryer, L. (1969) Fluorescence studies of nucleotides and polynucleotides. I. Formycin, 2-aminopurine riboside, 2,6-diaminopurine riboside, and their derivatives. J. Biol. Chem. 244, 1228-1237.
-
(1969)
J. Biol. Chem.
, vol.244
, pp. 1228-1237
-
-
Ward, D.C.1
Reich, E.2
Stryer, L.3
-
21
-
-
0025845771
-
Dynamics of mismatched base pairs in DNA
-
Guest, C. R., Hochstrasser, R. A., Sowers, L. C., and Millar, D. P. (1991) Dynamics of mismatched base pairs in DNA, Biochemistry 50, 3271-3279.
-
(1991)
Biochemistry
, vol.50
, pp. 3271-3279
-
-
Guest, C.R.1
Hochstrasser, R.A.2
Sowers, L.C.3
Millar, D.P.4
-
22
-
-
0035969959
-
Probing structure and dynamics of DNA with 2-aminopurine: Effects of local environment on fluorescence
-
Rachofsky, E. L., Osman, R., and Ross, J. B. A. (2001) Probing structure and dynamics of DNA with 2-aminopurine: Effects of local environment on fluorescence, Biochemistry 40, 946-956.
-
(2001)
Biochemistry
, vol.40
, pp. 946-956
-
-
Rachofsky, E.L.1
Osman, R.2
Ross, J.B.A.3
-
23
-
-
0032516443
-
2+ binding properties of bacteriophage T4 DNA polymerase
-
2+ binding properties of bacteriophage T4 DNA polymerase, Biochemistry 37, 10144-10155.
-
(1998)
Biochemistry
, vol.37
, pp. 10144-10155
-
-
Beechem, J.M.1
Otto, M.2
Bloom, L.B.3
Eritja, R.4
Reha-Krantz, L.J.5
Goodman, M.F.6
-
24
-
-
0029802609
-
Using 2-aminopurine fluorescence and mutational analysis to demonstrate an active role of bacteriophage T4 DNA polymerase in strand separation required for 3′ → 5′ exonuclease activity
-
Marquez, L. A., and Reha-Krantz, L. J. (1996) Using 2-aminopurine fluorescence and mutational analysis to demonstrate an active role of bacteriophage T4 DNA polymerase in strand separation required for 3′ → 5′ exonuclease activity, J. Biol. Chem. 271, 28903-28911.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 28903-28911
-
-
Marquez, L.A.1
Reha-Krantz, L.J.2
-
25
-
-
0021867612
-
Influence of neighboring bases on DNA polymerase insertion and proofreading fidelity
-
Petruska, J., and Goodman, M. F. (1985) Influence of neighboring bases on DNA polymerase insertion and proofreading fidelity, J. Biol. Chem. 260, 7533-7539.
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 7533-7539
-
-
Petruska, J.1
Goodman, M.F.2
-
27
-
-
0027717954
-
Genetic and biochemical studies of bacteriophage T4 DNA polymerase 3′ → 5′ exonuclease activity
-
Reha-Krantz, L. J., and Nonay, R. L. (1993) Genetic and biochemical studies of bacteriophage T4 DNA polymerase 3′ → 5′ exonuclease activity, J. Biol. Chem. 268, 27100-27108.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 27100-27108
-
-
Reha-Krantz, L.J.1
Nonay, R.L.2
-
28
-
-
0027998846
-
Motif a of bacteriophage T4 DNA polymerase: Role in primer extension and DNA replication fidelity
-
Reha-Krantz, L. J., and Nonay, R. L. (1994) Motif A of bacteriophage T4 DNA polymerase: Role in primer extension and DNA replication fidelity, J. Biol. Chem. 269, 5635-5643.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 5635-5643
-
-
Reha-Krantz, L.J.1
Nonay, R.L.2
-
29
-
-
36449000480
-
Stroboscopic optical boxcar technique for the determination of fluorescence lifetimes
-
James, D. R., Siemiarczuk, A., and Ware, W. R. (1992) Stroboscopic optical boxcar technique for the determination of fluorescence lifetimes, Rev. Sci. Instrum. 63, 1710-1716.
-
(1992)
Rev. Sci. Instrum.
, vol.63
, pp. 1710-1716
-
-
James, D.R.1
Siemiarczuk, A.2
Ware, W.R.3
-
30
-
-
0028143392
-
Melting of a DNA helix terminus within the active site of a DNA polymerase
-
Hochstrasser, R. A., Carver, T. E., Sowers, L. C., and Millar, D. P. (1994) Melting of a DNA helix terminus within the active site of a DNA polymerase, Biochemistry 33, 11971-11979.
-
(1994)
Biochemistry
, vol.33
, pp. 11971-11979
-
-
Hochstrasser, R.A.1
Carver, T.E.2
Sowers, L.C.3
Millar, D.P.4
-
31
-
-
0034077645
-
Sequence dependence of energy transfer in DNA oligonucleotides
-
Xu, D. G., and Nordlund, T. M. (2000) Sequence dependence of energy transfer in DNA oligonucleotides, Biophys. J. 78, 1042-1058.
-
(2000)
Biophys. J.
, vol.78
, pp. 1042-1058
-
-
Xu, D.G.1
Nordlund, T.M.2
-
32
-
-
0035969981
-
Conformation and dynamics of abasic sites in DNA investigated by time-resoloved fluorescence of 2-aminopurine
-
Rachofsky, E. L., Seibert, E., Stivers, J. T., Osman, R., and Ross, J. B. A. (2001) Conformation and dynamics of abasic sites in DNA investigated by time-resoloved fluorescence of 2-aminopurine, Biochemistry 40, 957-967.
-
(2001)
Biochemistry
, vol.40
, pp. 957-967
-
-
Rachofsky, E.L.1
Seibert, E.2
Stivers, J.T.3
Osman, R.4
Ross, J.B.A.5
-
33
-
-
0018800392
-
Error induction and correction by mutant and wild-type T4 DNA polymerase. Kinetic error discrimination mechanisms
-
Clayton, L. K., Goodman, M. F., Branscomb, E. W., and Galas, D. J. (1979) Error induction and correction by mutant and wild-type T4 DNA polymerase. Kinetic error discrimination mechanisms, J. Biol. Chem. 254, 1902-1912.
-
(1979)
J. Biol. Chem.
, vol.254
, pp. 1902-1912
-
-
Clayton, L.K.1
Goodman, M.F.2
Branscomb, E.W.3
Galas, D.J.4
-
34
-
-
0017226230
-
An antimutator deoxyribonucleic acid polymerase. II. In vitro studies of its temperature sensitivity
-
Lo, K.-Y., and Bessman, M. J. (1976) An antimutator deoxyribonucleic acid polymerase. II. In vitro studies of its temperature sensitivity, J. Biol. Chem. 251, 2480-2486.
-
(1976)
J. Biol. Chem.
, vol.251
, pp. 2480-2486
-
-
Lo, K.-Y.1
Bessman, M.J.2
-
35
-
-
0028892405
-
Dynamics of bacteriophage T4 DNA polymerase function: Identification of amino acid residues that affect switching between polymerase and 3′ → 5′ exonuclease activities
-
Stocki, S. A., Nonay, R. L., and Reha-Krantz, L. J. (1995) Dynamics of bacteriophage T4 DNA polymerase function: Identification of amino acid residues that affect switching between polymerase and 3′ → 5′ exonuclease activities, J. Mol. Biol. 254, 15-28.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 15-28
-
-
Stocki, S.A.1
Nonay, R.L.2
Reha-Krantz, L.J.3
-
36
-
-
0032584187
-
Identification of a transient excision intermediate at the crossroads between DNA polymerase extension and proofreading pathways
-
Baker, R. P., and Reha-Krantz, L. J. (1998) Identification of a transient excision intermediate at the crossroads between DNA polymerase extension and proofreading pathways, Proc. Natl. Acad. Sci. U.S.A. 95, 3507-3512.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 3507-3512
-
-
Baker, R.P.1
Reha-Krantz, L.J.2
-
37
-
-
1642276330
-
Structural basis for substrate selection by T7 RNA polymerase
-
Temiakov, D., Patlan, P., Aniken, M., McAllister, W. T., Yokoyama, S., and Vassylyev, D. G. (2004) Structural basis for substrate selection by T7 RNA polymerase, Cell 116, 381-391.
-
(2004)
Cell
, vol.116
, pp. 381-391
-
-
Temiakov, D.1
Patlan, P.2
Aniken, M.3
McAllister, W.T.4
Yokoyama, S.5
Vassylyev, D.G.6
-
38
-
-
0030693128
-
-) activity on damaged DNA templates: Effect of proximal and distal template damage on DNA synthesis
-
-) activity on damaged DNA templates: Effect of proximal and distal template damage on DNA synthesis, Biochemistry 36, 15336-15342.
-
(1997)
Biochemistry
, vol.36
, pp. 15336-15342
-
-
Miller, H.1
Grollman, A.P.2
-
39
-
-
0026702250
-
Interaction of Drosophila DNA polymerase α holoenzyme with synthetic template-primers containing mismatched primer bases or propanodeoxyguanosine adducts at various position in template and primer regions
-
Weiss, S. J., and Fisher, P. A. (1992) Interaction of Drosophila DNA polymerase α holoenzyme with synthetic template-primers containing mismatched primer bases or propanodeoxyguanosine adducts at various position in template and primer regions, J. Biol. Chem. 267, 18520-18526.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 18520-18526
-
-
Weiss, S.J.1
Fisher, P.A.2
|