Probing the structure and dynamics of a DNA hairpin by ultrafast quenching and fluorescence depolarization

Biophysical Journal

Volumn 81, Issue 2, 2001, Pages 1115-1126

  Larsen, Olaf F A ^a   Van Stokkum, Ivo H M ^a   Gobets, Bas ^a   Van Grondelle, Rienk ^a   Van Amerongen, Herbert ^a  

^a VU UNIVERSITY AMSTERDAM   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

2 AMINOPURINE; ADENINE; DNA; DOUBLE STRANDED DNA; GUANINE; OLIGONUCLEOTIDE;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CONFORMATION; DEPOLARIZATION; DNA STRUCTURE; FLAME PHOTOMETRY; FLUORESCENCE; MELTING POINT; MOLECULAR DYNAMICS; STRUCTURE ANALYSIS; TEMPERATURE DEPENDENCE;

EID: 0034896734     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(01)75768-2     Document Type: Article

References (37)

1. Rotational motions of bases in DNA
2. A theoretical investigation of the physical reason for the very different luminescence properties of the two isomers adenine and 2-aminopurine
3. Ab initio MP2 and DFT calculations of geometry and solution tautomerism of purine and some purine derivatives
4. From atomic to mesoscopic descriptions of the internal dynamics of DNA
5. Monitoring conformational dynamics of a single molecule by selective fluorescence spectroscopy
6. Redox pathways in DNA oxidation: Kinetic studies of guanine and sugar oxidation by para-substituted derivatives of oxoruthenium(IV)
7. The energy landscapes and motions of proteins
8. Large-amplitude picosecond anisotropy decay of the intrinsic fluorescence of double-stranded DNA
9. Localized DNA flexibility contributes to target site selection by DNA-bending proteins
10. Dynamics of mismatched base pairs in DNA
11. Flexibility of DNA
12. Melting of a DNA helix terminus within the active site of a DNA polymerase
13. Importance of DNA stiffness in protein-DNA binding specificity
14. Electronic transition moments of 2-aminopurine
15. Electron transfer between bases in double helical DNA
16. The regulation of human immunodeficiency virus type-1 gene expression
17. Förster excitation energy transfer in pyridinin-chlorophyll-a-protein
18. Mechanism of neomycin and rev peptide binding to the rev responsive element of HIV-1 as determined by fluorescence and NMR spectroscopy
19. Dynamic bending rigidity of a 200-bp DNA in 4 mM ionic strength: A transient polarization grating study
20. Structure and dynamics of a fluorescent DNA oligomer containing the EcoRI recognition sequence: Fluorescence, molecular dynamics, and NMR studies
21. Excitation energy transfer in DNA: Duplex melting and transfer from normal bases to 2-aminopurine
22. Donor-acceptor distributions in a double-labeled fluorescent oligonucleotide both as a single strand and in duplexes
23. Structural change in rev responsive element RNA of HIV-1 on binding rev peptide
24. Structure of the nucleosome core particle at 7 Å resolution
25. Fluorescence studies of nucleic acids: Dynamics, rigidities, and structures
26. Oxidation of guanine at a distance in oligonucleotides induced by two-photon photoionization of 2-aminopurine
27. Electron transfer at a distance induced by site-selective photoionization of 2-aminopurine in oligonucleotides and investigated by transient absorption techniques
28. Base pairing and mutagenesis: Observation of a protonated base pair between 2-aminopurine and cytosine in an oligonucleotide by proton NMR
29. How easily oxidizable is DNA? One-electron reduction potentials of adenosine and guanosine radicals in aqueous solution
30. Temperature-induced changes in protein structures studied by Fourier transform infrared spectroscopy and global analysis
31. Conformational dynamics of flexibility and semirigidly bridged electron donor-acceptor systems as revealed by spectrotemporal parameterization of fluorescence
32. Femtosecond dynamics of DNA-mediated electron transfer
33. Femtosecond direct observation of charge transfer between bases in DNA
34. Architectural transcription factors
35. Base stacking and unstacking as determined from a DNA decamer containing a fluorescent base