Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining

BMC Bioinformatics

Volumn 8, Issue , 2007, Pages

  Morgan, Xochitl C ^a   Ni, Shulin ^b   Miranker, Daniel P ^b   Iyer, Vishwanath R ^a  

^a UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^b University of Texas at Austin   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CIS-REGULATORY ELEMENTS; EXPRESSION LEVELS; FUNCTIONAL ELEMENTS; MAMMALIAN GENOMES; MARKET BASKET ANALYSIS; REGULATORY ELEMENTS; RULE MINING ALGORITHMS; TRANSCRIPTION FACTOR BINDING;

ALGORITHMS; ASSOCIATION RULES; DATA MINING; GENES; MAMMALS;

TRANSCRIPTION FACTORS;

CIS ACTING ELEMENT; TRANSCRIPTION FACTOR;

ARTICLE; BINDING SITE; BIOINFORMATICS; CLASSIFICATION ALGORITHM; DATA MINING; GENE EXPRESSION REGULATION; GENOME ANALYSIS; HUMAN; HUMAN CHROMOSOME; HUMAN GENOME; MEDLINE; NONHUMAN; PROTEIN ASSEMBLY; PROTEIN BINDING; PROTEIN DETERMINATION; PROTEIN FUNCTION; PROTEIN MOTIF; REGULATORY SEQUENCE; STATISTICAL SIGNIFICANCE; STRUCTURE ANALYSIS; ALGORITHM; BIOLOGICAL MODEL; EVALUATION; FACTUAL DATABASE; FORECASTING; GENE EXPRESSION PROFILING; GENOME; INFORMATION PROCESSING; METABOLISM; METHODOLOGY; MICROARRAY ANALYSIS;

MAMMALIA;

ALGORITHMS; AUTOMATIC DATA PROCESSING; BINDING SITES; DATABASES, FACTUAL; FORECASTING; GENE EXPRESSION PROFILING; GENOME, HUMAN; HUMANS; MICROARRAY ANALYSIS; MODELS, BIOLOGICAL; PROTEIN BINDING; REGULATORY ELEMENTS, TRANSCRIPTIONAL; TRANSCRIPTION FACTORS;

EID: 38549158519     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-445     Document Type: Article

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