-
1
-
-
0042626242
-
SKN-1 links C. elegans mesendodermal specification to a conserved oxidative stress response
-
An J.H., Blackwell T.K. SKN-1 links C. elegans mesendodermal specification to a conserved oxidative stress response. Genes Dev. 17:2003;1882-1893.
-
(2003)
Genes Dev.
, vol.17
, pp. 1882-1893
-
-
An, J.H.1
Blackwell, T.K.2
-
2
-
-
0025900189
-
Modifiers of position effect are shared between telomeric and silent mating-type loci in S. cerevisiae
-
Aparicio O.M., Billington B.L., Gottschling D.E. Modifiers of position effect are shared between telomeric and silent mating-type loci in S. cerevisiae. Cell. 66:1991;1279-1287.
-
(1991)
Cell
, vol.66
, pp. 1279-1287
-
-
Aparicio, O.M.1
Billington, B.L.2
Gottschling, D.E.3
-
3
-
-
0037350760
-
Composition and dynamics of the Caenorhabditis elegans early embronic transcriptome
-
Baugh L.R., Hill A.A., Slonim D.K., Brown E.L., Hunter C.P. Composition and dynamics of the Caenorhabditis elegans early embronic transcriptome. Development. 130:2003;889-900.
-
(2003)
Development
, vol.130
, pp. 889-900
-
-
Baugh, L.R.1
Hill, A.A.2
Slonim, D.K.3
Brown, E.L.4
Hunter, C.P.5
-
4
-
-
0028104274
-
Formation of a monomeric DNA binding domain by Skn-1 bZIP and homeodomain elements
-
Blackwell T.K., Bowerman B., Priess J., Weintraub H. Formation of a monomeric DNA binding domain by Skn-1 bZIP and homeodomain elements. Science. 266:1994;621-628.
-
(1994)
Science
, vol.266
, pp. 621-628
-
-
Blackwell, T.K.1
Bowerman, B.2
Priess, J.3
Weintraub, H.4
-
5
-
-
0026529831
-
Skn-1, a maternally expressed gene required to specify the fate of ventral blastomeres in the early C. elegans embryo
-
Bowerman B., Eaton B., Priess J. skn-1, a maternally expressed gene required to specify the fate of ventral blastomeres in the early C. elegans embryo. Cell. 68:1992;1061-1075.
-
(1992)
Cell
, vol.68
, pp. 1061-1075
-
-
Bowerman, B.1
Eaton, B.2
Priess, J.3
-
6
-
-
0030211964
-
Bagging predictors
-
Breiman L. Bagging predictors. Mach. Learn. 24:1996;123-140.
-
(1996)
Mach. Learn.
, vol.24
, pp. 123-140
-
-
Breiman, L.1
-
7
-
-
0035135420
-
Regulatory element detection using correlation with expression
-
Bussemaker H.J., Li H., Siggia E.D. Regulatory element detection using correlation with expression. Nat. Genet. 27:2001;167-171.
-
(2001)
Nat. Genet.
, vol.27
, pp. 167-171
-
-
Bussemaker, H.J.1
Li, H.2
Siggia, E.D.3
-
8
-
-
0033780450
-
A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression
-
Cohen B., Mitra R., Hughes J., Church G. A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression. Nat. Genet. 26:2000;183-186.
-
(2000)
Nat. Genet.
, vol.26
, pp. 183-186
-
-
Cohen, B.1
Mitra, R.2
Hughes, J.3
Church, G.4
-
9
-
-
34249832377
-
A Bayesian method for the induction of probabilistic networks from data
-
Cooper G., Herskovits E. A Bayesian method for the induction of probabilistic networks from data. Mach. Learn. 9:1992;309-347.
-
(1992)
Mach. Learn.
, vol.9
, pp. 309-347
-
-
Cooper, G.1
Herskovits, E.2
-
10
-
-
0035193819
-
Cluster stability and the use of noise in interpretation of clustering
-
Davidson, G.S., Wylie, B.N., and Boyack, K.W. (2001). Cluster stability and the use of noise in interpretation of clustering. Proc IEEE Information Visualization, 23-30.
-
(2001)
Proc IEEE Information Visualization
, pp. 23-30
-
-
Davidson, G.S.1
Wylie, B.N.2
Boyack, K.W.3
-
11
-
-
0037452576
-
Regulatory gene networks and the properties of the developmental process
-
Davidson E.H., McClay D.R., Hood L. Regulatory gene networks and the properties of the developmental process. Proc. Natl. Acad. Sci. USA. 100:2003;1475-1480.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 1475-1480
-
-
Davidson, E.H.1
McClay, D.R.2
Hood, L.3
-
13
-
-
0000220520
-
Learning Bayesian networks with local structure
-
M.I. Jordan. Cambridge, MA: MIT Press
-
Friedman N., Goldszmidt M. Learning Bayesian networks with local structure. Jordan M.I. Learning in Graphical Models. 1998;421-459 MIT Press, Cambridge, MA.
-
(1998)
Learning in Graphical Models
, pp. 421-459
-
-
Friedman, N.1
Goldszmidt, M.2
-
14
-
-
0037262841
-
Being Bayesian about network structure. a Bayesian approach to structure discovery in Bayesian networks
-
Friedman N., Koller D. Being Bayesian about network structure. A Bayesian approach to structure discovery in Bayesian networks. Mach. Learn. 50:2003;95-125.
-
(2003)
Mach. Learn.
, vol.50
, pp. 95-125
-
-
Friedman, N.1
Koller, D.2
-
16
-
-
0038048325
-
Inferring genetic networks and identifying compound mode of action via expression profiling
-
Gardner T.S., di Bernardo D., Lorenz D., Collins J.J. Inferring genetic networks and identifying compound mode of action via expression profiling. Science. 301:2003;102-105.
-
(2003)
Science
, vol.301
, pp. 102-105
-
-
Gardner, T.S.1
Di Bernardo, D.2
Lorenz, D.3
Collins, J.J.4
-
17
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch A., Spellman P., Kao C., Carmel-Harel O., Eisen M., Storz G., Botstein D., Brown P.O. Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell. 11:2000;4241-4257.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.1
Spellman, P.2
Kao, C.3
Carmel-Harel, O.4
Eisen, M.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
-
18
-
-
0025201982
-
Position effect at S. cerevisiae telomeres: Reversible repression of Pol II transcription
-
Gottschling D.E., Aparicio O.M., Billington B.L., Zakian V.A. Position effect at S. cerevisiae telomeres. reversible repression of Pol II transcription Cell. 63:1990;751-762.
-
(1990)
Cell
, vol.63
, pp. 751-762
-
-
Gottschling, D.E.1
Aparicio, O.M.2
Billington, B.L.3
Zakian, V.A.4
-
20
-
-
0002370418
-
A tutorial on learning with Bayesian networks
-
M.I. Jordan. Cambridge, MA: MIT Press
-
Heckerman D. A tutorial on learning with Bayesian networks. Jordan M.I. Learning in Graphical Models. 1998;301-354 MIT Press, Cambridge, MA.
-
(1998)
Learning in Graphical Models
, pp. 301-354
-
-
Heckerman, D.1
-
21
-
-
34249761849
-
Learning Bayesian networks: The combination of knowledge and statistical data
-
Heckerman D., Geiger D., Chickering M. Learning Bayesian networks. the combination of knowledge and statistical data Mach. Learn. 20:1995;197-243.
-
(1995)
Mach. Learn.
, vol.20
, pp. 197-243
-
-
Heckerman, D.1
Geiger, D.2
Chickering, M.3
-
22
-
-
0034721722
-
Genomic analysis of gene expression in C. elegans
-
Hill A.A., Hunter C.P., Tsung B.T., Tucker-Kellogg G., Brown E.L. Genomic analysis of gene expression in C. elegans. Science. 290:2000;809-812.
-
(2000)
Science
, vol.290
, pp. 809-812
-
-
Hill, A.A.1
Hunter, C.P.2
Tsung, B.T.3
Tucker-Kellogg, G.4
Brown, E.L.5
-
23
-
-
0034628901
-
Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
-
Hughes J.D., Estep P.W., Tavazoie S., Church G.M. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. J. Mol. Biol. 296:2000;1205-1214.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 1205-1214
-
-
Hughes, J.D.1
Estep, P.W.2
Tavazoie, S.3
Church, G.M.4
-
24
-
-
0026027982
-
A position-effect assay for boundaries of higher order chromosomal domains
-
Kellum R., Schedl P. A position-effect assay for boundaries of higher order chromosomal domains. Cell. 64:1991;941-950.
-
(1991)
Cell
, vol.64
, pp. 941-950
-
-
Kellum, R.1
Schedl, P.2
-
25
-
-
0035860551
-
A gene expression map for Caenorhabditis elegans
-
Kim S., Lund J., Kiraly M., Duke K., Jiang M., Stuart J., Eizinger A., Wylie B., Davidson G. A gene expression map for Caenorhabditis elegans. Science. 293:2001;2087-2092.
-
(2001)
Science
, vol.293
, pp. 2087-2092
-
-
Kim, S.1
Lund, J.2
Kiraly, M.3
Duke, K.4
Jiang, M.5
Stuart, J.6
Eizinger, A.7
Wylie, B.8
Davidson, G.9
-
27
-
-
0024278053
-
Conservation in the 5′ flanking sequences of transcribed members of the Caenorhabditis elegans major sperm protein gene family
-
Klass M., Ammons D., Ward S. Conservation in the 5′ flanking sequences of transcribed members of the Caenorhabditis elegans major sperm protein gene family. J. Mol. Biol. 199:1988;15-22.
-
(1988)
J. Mol. Biol.
, vol.199
, pp. 15-22
-
-
Klass, M.1
Ammons, D.2
Ward, S.3
-
29
-
-
0032929162
-
DNA-binding requirements of the yeast protein Rap1p as selected in silico from ribosomal protein promoters
-
Lascaris R.F., Planta W.H., Mager R.J. DNA-binding requirements of the yeast protein Rap1p as selected in silico from ribosomal protein promoters. Bioinformatics. 15:1999;267-277.
-
(1999)
Bioinformatics
, vol.15
, pp. 267-277
-
-
Lascaris, R.F.1
Planta, W.H.2
Mager, R.J.3
-
30
-
-
0027912333
-
Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
-
Lawrence C.E., Altschul S.F., Boguski M.S., Liu J.S., Neuwald A.F., Wootton J.C. Detecting subtle sequence signals. a Gibbs sampling strategy for multiple alignment Science. 262:1993;208-214.
-
(1993)
Science
, vol.262
, pp. 208-214
-
-
Lawrence, C.E.1
Altschul, S.F.2
Boguski, M.S.3
Liu, J.S.4
Neuwald, A.F.5
Wootton, J.C.6
-
31
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee T.I., Rinaldi N., Roberts F., Odom D., Bar-Joseph Z., Gerber G., Hannett N.M., Harbison C.T., Thompson C.M., Simon I.et al. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science. 298:2002;799-804.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.2
Roberts, F.3
Odom, D.4
Bar-Joseph, Z.5
Gerber, G.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
-
32
-
-
0037819447
-
Transcription regulation and animal diversity
-
Levine M., Tjian R. Transcription regulation and animal diversity. Nature. 424:2003;147-151.
-
(2003)
Nature
, vol.424
, pp. 147-151
-
-
Levine, M.1
Tjian, R.2
-
33
-
-
0000808485
-
Spermatogenesis
-
D. Riddle, T. Blumenthal, B. Meyer, & J. Priess. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
-
L'Hernault S. Spermatogenesis. Riddle D., Blumenthal T., Meyer B., Priess J. C. elegans II. 1997;271-294 Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1997)
C. Elegans II
, pp. 271-294
-
-
L'Hernault, S.1
-
34
-
-
0035265680
-
Restriction of mesendoderm to a single blastomere by the combined action of SKN-1 and a GSK-3β homolog is mediated by MED-1 and -2 in C. elegans
-
Maduro M., Meneghini M., Bowerman B., Broitman-Maduro G., Rothman J. Restriction of mesendoderm to a single blastomere by the combined action of SKN-1 and a GSK-3β homolog is mediated by MED-1 and -2 in C. elegans. Mol. Cell. 7:2001;475-485.
-
(2001)
Mol. Cell
, vol.7
, pp. 475-485
-
-
Maduro, M.1
Meneghini, M.2
Bowerman, B.3
Broitman-Maduro, G.4
Rothman, J.5
-
35
-
-
0029879360
-
The Saccharomyces cerevisiae zinc-finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress-response element (STRE)
-
Martinez-Pastor M.T., Marchler G., Schuller C., Marchler-Bauer A., Ruis H., Estruch F. The Saccharomyces cerevisiae zinc-finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress-response element (STRE). EMBO J. 15:1996;2227-2235.
-
(1996)
EMBO J.
, vol.15
, pp. 2227-2235
-
-
Martinez-Pastor, M.T.1
Marchler, G.2
Schuller, C.3
Marchler-Bauer, A.4
Ruis, H.5
Estruch, F.6
-
36
-
-
0029144601
-
Gibbs motif sampling: Detection of bacterial outer membrane protein repeats
-
Neuwald A.F., Liu J.S., Lawrence C.E. Gibbs motif sampling. detection of bacterial outer membrane protein repeats Protein Sci. 4:1995;1618-1632.
-
(1995)
Protein Sci.
, vol.4
, pp. 1618-1632
-
-
Neuwald, A.F.1
Liu, J.S.2
Lawrence, C.E.3
-
38
-
-
0034785443
-
Identifying regulatory networks by combinatorial analysis of promoter elements
-
Pilpel Y., Sudarsanam P., Church G. Identifying regulatory networks by combinatorial analysis of promoter elements. Nat. Genet. 29:2001;153-159.
-
(2001)
Nat. Genet.
, vol.29
, pp. 153-159
-
-
Pilpel, Y.1
Sudarsanam, P.2
Church, G.3
-
40
-
-
0024390043
-
Nucleotide sequences of Caenorhabditis elegans core histone genes
-
Roberts S.B., Emmons S.W., Childs G. Nucleotide sequences of Caenorhabditis elegans core histone genes. J. Mol. Biol. 206:1989;567-577.
-
(1989)
J. Mol. Biol.
, vol.206
, pp. 567-577
-
-
Roberts, S.B.1
Emmons, S.W.2
Childs, G.3
-
41
-
-
0031787969
-
Finding DNA-regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
-
Roth F.P., Hughes J.D., Estep P.W., Church G.M. Finding DNA-regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nat. Biotechnol. 16:1998;939-945.
-
(1998)
Nat. Biotechnol.
, vol.16
, pp. 939-945
-
-
Roth, F.P.1
Hughes, J.D.2
Estep, P.W.3
Church, G.M.4
-
42
-
-
0025008168
-
Sequence logos: A new way to display consensus sequences
-
Schneider T.D., Stephens R.M. Sequence logos. a new way to display consensus sequences Nucleic Acids Res. 18:1990;6097-6100.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
43
-
-
0037941585
-
Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data
-
Segal E., Shapira M., Regev A., Pe'er D., Botstein D., Koller D., Friedman N. Module networks. identifying regulatory modules and their condition-specific regulators from gene expression data Nat. Genet. 34:2003;166-176.
-
(2003)
Nat. Genet.
, vol.34
, pp. 166-176
-
-
Segal, E.1
Shapira, M.2
Regev, A.3
Pe'Er, D.4
Botstein, D.5
Koller, D.6
Friedman, N.7
-
44
-
-
0031742022
-
Comprehensive indentification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiase by microarray hybridization
-
Spellman P.T., Sherlock G., Zhang M., Iver V., Anders K., Eisen M.B., Brown P.O., Botstein D., Futcher B. Comprehensive indentification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiase by microarray hybridization. Mol. Biol. Cell. 9:1998;3273-3297.
-
(1998)
Mol. Biol. Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.3
Iver, V.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
45
-
-
0032032780
-
Specificity, free energy and information content in protein-DNA interactions
-
Stormo G., Fields D. Specificity, free energy and information content in protein-DNA interactions. Trends Biochem. Sci. 23:1998;109-113.
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 109-113
-
-
Stormo, G.1
Fields, D.2
-
46
-
-
0141993704
-
A gene-coexpression network for global discovery of conserved genetic modules
-
Stuart J.M., Segal E., Koller D., Kim S.K. A gene-coexpression network for global discovery of conserved genetic modules. Science. 302:2003;249-255.
-
(2003)
Science
, vol.302
, pp. 249-255
-
-
Stuart, J.M.1
Segal, E.2
Koller, D.3
Kim, S.K.4
-
47
-
-
0036851309
-
Genome-wide co-occurence of promoter elements reveals a cis-regulatory cassette of rRNA transcription motifs in Saccharomyces cerevisiae
-
Sudarsanam P., Pilpel Y., Church G.M. Genome-wide co-occurence of promoter elements reveals a cis-regulatory cassette of rRNA transcription motifs in Saccharomyces cerevisiae. Genome Res. 12:2002;1723-1731.
-
(2002)
Genome Res.
, vol.12
, pp. 1723-1731
-
-
Sudarsanam, P.1
Pilpel, Y.2
Church, G.M.3
-
48
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
-
Tamayo P., Slonim D., Mesirov J., Zhu Q., Kitareewan S., Dmitrovzky E., Lander E., Golub T. Interpreting patterns of gene expression with self-organizing maps. methods and application to hematopoietic differentiation Proc. Natl. Acad. Sci. USA. 96:1999;2907-2912.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovzky, E.6
Lander, E.7
Golub, T.8
-
49
-
-
0033028596
-
Systematic determination of genetic network architecture
-
Tavazoie S., Hughes J.D., Campbell M.J., Cho R.J., Church G.M. Systematic determination of genetic network architecture. Nat. Genet. 22:1999;281-285.
-
(1999)
Nat. Genet.
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.D.2
Campbell, M.J.3
Cho, R.J.4
Church, G.M.5
-
50
-
-
0022718928
-
Conserved sequence elements upstream of the gene encoding yeast ribosomal protein L25 are involved in transcription activation
-
Woudt L.P., Smit A.B., Mager W.H., Planta R.J. Conserved sequence elements upstream of the gene encoding yeast ribosomal protein L25 are involved in transcription activation. EMBO J. 5:1986;1037-1040.
-
(1986)
EMBO J.
, vol.5
, pp. 1037-1040
-
-
Woudt, L.P.1
Smit, A.B.2
Mager, W.H.3
Planta, R.J.4
|