메뉴 건너뛰기




Volumn , Issue , 1997, Pages 65-74

Data Mining for Regulatory Elements in Yeast Genome

Author keywords

complete genome; data mining; IMD; MIPS; promoters; TRANS FAC; transcription factors; yeast

Indexed keywords

ARTIFICIAL INTELLIGENCE; BINDING SITES; DATABASE SYSTEMS; TRANSCRIPTION; TRANSCRIPTION FACTORS; YEAST;

EID: 0030629294     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (34)

References (32)
  • 1
    • 0023894726 scopus 로고
    • Selection of DNA binding sites by regulatory proteins
    • Berg, O. G., and von Hippel, P. H. 1988. Selection of DNA binding sites by regulatory proteins. Journal of Molecular Biology 200:709-723.
    • (1988) Journal of Molecular Biology , vol.200 , pp. 709-723
    • Berg, O. G.1    von Hippel, P. H.2
  • 2
    • 0025278259 scopus 로고
    • Weight matrix description of four eukaryotic RNA polymerase II promoter elements derived from 502 mirelated promoter sequences
    • Bucher, P. 1990. Weight matrix description of four eukaryotic RNA polymerase II promoter elements derived from 502 mirelated promoter sequences. Journal of Molecular Biology 212:563-578.
    • (1990) Journal of Molecular Biology , vol.212 , pp. 563-578
    • Bucher, P.1
  • 3
    • 0040768700 scopus 로고    scopus 로고
    • Technical Report EMBL Nucleotide Sequence Library, Release 47, European Bioinformatics Institute, Hinxton Hall, Hinxton, Cambridge, CBIO IRQ, UK
    • Bucher, P. 1996. The eukaryotic promoter database EPD. Technical Report EMBL Nucleotide Sequence Library, Release 47, European Bioinformatics Institute, Hinxton Hall, Hinxton, Cambridge, CBIO IRQ, UK.
    • (1996) The eukaryotic promoter database EPD
    • Bucher, P.1
  • 4
    • 0028822147 scopus 로고
    • Artificial neural network method for discriminating coding regions of eukaryotic genes
    • Cai, Y., and Chen, C. 1995. Artificial neural network method for discriminating coding regions of eukaryotic genes. Computer Applications in Biosciences 11:497-501.
    • (1995) Computer Applications in Biosciences , vol.11 , pp. 497-501
    • Cai, Y.1    Chen, C.2
  • 5
    • 0026602181 scopus 로고
    • Expectation maximization algorithm for identifying protein-binding sites with variable lenghts from unailigned DNA fragments
    • Cardon, L. R., and Stormo, G. D. 1992. Expectation maximization algorithm for identifying protein-binding sites with variable lenghts from unailigned DNA fragments. Journal of Molecular Biology 223:159-170.
    • (1992) Journal of Molecular Biology , vol.223 , pp. 159-170
    • Cardon, L. R.1    Stormo, G. D.2
  • 6
    • 0028784743 scopus 로고
    • MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices
    • Chen, Q. K.; Hertz, G. Z.; and Stormo, G. D. 1995. MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices. Computer Applications in Biosciences 11:563-566.
    • (1995) Computer Applications in Biosciences , vol.11 , pp. 563-566
    • Chen, Q. K.1    Hertz, G. Z.2    Stormo, G. D.3
  • 7
    • 0030285403 scopus 로고    scopus 로고
    • The KDD process for extracting useful knowledge from volumes of data
    • Fayyad, U.; Piatetsky-Shapiro, G.; and Smyth, P. 1996. The KDD process for extracting useful knowledge from volumes of data. Communications of the ACM 39:27-34.
    • (1996) Communications of the ACM , vol.39 , pp. 27-34
    • Fayyad, U.1    Piatetsky-Shapiro, G.2    Smyth, P.3
  • 8
    • 0027286405 scopus 로고
    • Computer-assisted prediction, classification, and delimitation of protein binding sites in nucleic acids
    • Freeh, K.; Herrmann, G.; and Werner, T. 1993. Computer-assisted prediction, classification, and delimitation of protein binding sites in nucleic acids. Nucleic Acids Research 21:1655-1664.
    • (1993) Nucleic Acids Research , vol.21 , pp. 1655-1664
    • Freeh, K.1    Herrmann, G.2    Werner, T.3
  • 9
    • 0025342557 scopus 로고
    • A relational database of transcriptional factors
    • Ghosh, D. 1990. A relational database of transcriptional factors. Nucleic Acids Research 18:1749-1756.
    • (1990) Nucleic Acids Research , vol.18 , pp. 1749-1756
    • Ghosh, D.1
  • 11
    • 85069096550 scopus 로고    scopus 로고
    • Multi-factorial ćind combinatorial models for specific transcriptional regulation
    • Goodbourn, S., ed., Oxford University Press
    • Goodbourn, S., and Kmg, P. 1996. Multi-factorial ćind combinatorial models for specific transcriptional regulation. In Goodbourn, S., ed., Eukaryotic Gene Transcription, 132-164. Oxford University Press.
    • (1996) Eukaryotic Gene Transcription , pp. 132-164
    • Goodbourn, S.1    Kmg, P.2
  • 13
    • 0001811485 scopus 로고
    • Identification of consensus patterns in unaligned DNA and protein sequences: a large-deviation statistical basis for penalizing gaps
    • Hertz, G. Z., and Stormo, G. D. 1994. Identification of consensus patterns in unaligned DNA and protein sequences: a large-deviation statistical basis for penalizing gaps. In Proc. of Third International Conference on Bioinformatics and Genome Research. http://www.scri.fsu.edu/mimi/bio94/hertz/hertz.html.
    • (1994) Proc. of Third International Conference on Bioinformatics and Genome Research
    • Hertz, G. Z.1    Stormo, G. D.2
  • 18
    • 0003229977 scopus 로고
    • Multiple interactions control the expression of yeast genes
    • Broda, P.; Oliver, S. G.; and Sims, P. F. G., eds.. Cambridge University Press
    • Mellor, J. 1993. Multiple interactions control the expression of yeast genes. In Broda, P.; Oliver, S. G.; and Sims, P. F. G., eds.. The Eukaryotic Genome, Organisation and Regulation, 275-320. Cambridge University Press.
    • (1993) The Eukaryotic Genome, Organisation and Regulation , pp. 275-320
    • Mellor, J.1
  • 19
    • 0024396320 scopus 로고
    • Transcription regulation in mammalian cells by sequence-specific DNA binding proteins
    • Mitchell, P. J., and Tijan, R. 1989. Transcription regulation in mammalian cells by sequence-specific DNA binding proteins. Science 245:371-378.
    • (1989) Science , vol.245 , pp. 371-378
    • Mitchell, P. J.1    Tijan, R.2
  • 21
    • 0025329047 scopus 로고
    • Human DNA TATA boxes and transcription initiation sites - a statistical study
    • Penotti, F. E. 1990. Human DNA TATA boxes and transcription initiation sites - a statistical study. Journal of Molecular Biology 213:37-51.
    • (1990) Journal of Molecular Biology , vol.213 , pp. 37-51
    • Penotti, F. E.1
  • 22
    • 0025831356 scopus 로고
    • SIGNAL SCAN: a computer program that scans DNA sequences for eukaryotic transcriptioDctl elements
    • Prestridge, D. S. 1991. SIGNAL SCAN: a computer program that scans DNA sequences for eukaryotic transcriptioDctl elements. Computer Applications in Biosciences 7:203-206.
    • (1991) Computer Applications in Biosciences , vol.7 , pp. 203-206
    • Prestridge, D. S.1
  • 23
    • 0029038960 scopus 로고
    • Predicting Pol II promoter sequence using trćinscription factor binding sites
    • Prestridge, D. S. 1995. Predicting Pol II promoter sequence using trćinscription factor binding sites. Journal of Molecular Biology 249:923-932.
    • (1995) Journal of Molecular Biology , vol.249 , pp. 923-932
    • Prestridge, D. S.1
  • 24
    • 0028971143 scopus 로고
    • Matind and Matlnspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data
    • Quandt, K.; FVech, K.; Karas, H.; Wingender, E.; and Werner, T. 1995. Matind and Matlnspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Research 23:4878-884.
    • (1995) Nucleic Acids Research , vol.23 , pp. 4878-4884
    • Quandt, K.1    FVech, K.2    Karas, H.3    Wingender, E.4    Werner, T.5
  • 25
    • 0029940589 scopus 로고    scopus 로고
    • Gen-omelnspector: Basic software tools for analysis of spatial correlations between genomic structures within megabase sequences
    • Quandt, K.; Grote, K.; and Werner, T. 1996. Gen-omelnspector: Basic software tools for analysis of spatial correlations between genomic structures within megabase sequences. Genomics 33:301-304.
    • (1996) Genomics , vol.33 , pp. 301-304
    • Quandt, K.1    Grote, K.2    Werner, T.3
  • 26
  • 27
    • 0028867670 scopus 로고
    • Review-Compilation and characteristics of dedicated transcription factors in Saccharomyces Cerevisiae
    • Svetlov, V. v., and Cooper, T. G. 1995. Review-Compilation and characteristics of dedicated transcription factors in Saccharomyces Cerevisiae. Yeast 11:1439-1484.
    • (1995) Yeast , vol.11 , pp. 1439-1484
    • Svetlov, V. v.1    Cooper, T. G.2
  • 28
    • 0003666102 scopus 로고    scopus 로고
    • Ph.D. Dissertation, University of Helsinki, Department of Computer Science, P.O. Box 26, FIN-00014 University of Helsinki, Finland
    • Toivonen, H. 1996. Discovery of Frequent Patterns in Large Data Collections. Ph.D. Dissertation, University of Helsinki, Department of Computer Science, P.O. Box 26, FIN-00014 University of Helsinki, Finland.
    • (1996) Discovery of Frequent Patterns in Large Data Collections
    • Toivonen, H.1
  • 30
    • 0029960055 scopus 로고    scopus 로고
    • TRANSFAC: a database of transcriptional factors and their DNA binding sites
    • Wingender, E.; Dietze, P.; Karas, H.; and Knüppel, R. 1996. TRANSFAC: a database of transcriptional factors and their DNA binding sites. Nucleic Acids Research 24:238-241.
    • (1996) Nucleic Acids Research , vol.24 , pp. 238-241
    • Wingender, E.1    Dietze, P.2    Karas, H.3    Knüppel, R.4
  • 31
    • 0028321942 scopus 로고
    • Recognition of regulatory regions in genomic sequences
    • Wingender, E. 1994. Recognition of regulatory regions in genomic sequences. Journal of Biotechnology 35:273-280.
    • (1994) Journal of Biotechnology , vol.35 , pp. 273-280
    • Wingender, E.1
  • 32
    • 0029867505 scopus 로고    scopus 로고
    • Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm
    • Wolfertstetter, F.; Frech, K.; Herrmann, G.; and Werner, T. 1996. Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm. Computer Applications in Biosciences 12:71-80.
    • (1996) Computer Applications in Biosciences , vol.12 , pp. 71-80
    • Wolfertstetter, F.1    Frech, K.2    Herrmann, G.3    Werner, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.