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Volumn 8, Issue , 2007, Pages

Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE; VIRUS DNA;

EID: 38349118808     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-8-456     Document Type: Article
Times cited : (39)

References (78)
  • 2
    • 33750105294 scopus 로고    scopus 로고
    • Viruses take center stage in cellular evolution
    • 1779534 16787527 10.1186/gb-2006-7-6-110
    • Claverie JM Viruses take center stage in cellular evolution Genome Biol 2006, 7(6):110 1779534 16787527 10.1186/gb-2006-7-6-110
    • (2006) Genome Biol , vol.7 , Issue.6 , pp. 110
    • Claverie, J.M.1
  • 3
    • 33644859575 scopus 로고    scopus 로고
    • Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: A hypothesis for the origin of cellular domain
    • 1450140 16505372 10.1073/pnas.0510333103
    • Forterre P Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: A hypothesis for the origin of cellular domain Proc Natl Acad Sci U S A 2006, 103(10):3669-3674 1450140 16505372 10.1073/pnas.0510333103
    • (2006) Proc Natl Acad Sci U S A , vol.103 , Issue.10 , pp. 3669-3674
    • Forterre, P.1
  • 4
    • 33947593126 scopus 로고    scopus 로고
    • The ancient Virus World and evolution of cells
    • 1594570 16984643 10.1186/1745-6150-1-29
    • Koonin EV Senkevich TG Dolja VV The ancient Virus World and evolution of cells Biol Direct 2006, 1:29 1594570 16984643 10.1186/1745-6150-1-29
    • (2006) Biol Direct , vol.1 , pp. 29
    • Koonin, E.V.1    Senkevich, T.G.2    Dolja, V.V.3
  • 6
    • 33645061768 scopus 로고    scopus 로고
    • Mimivirus and the emerging concept of "giant" virus
    • 10.1016/j.virusres.2006.01.008 16469402
    • Claverie JM Ogata H Audic S Abergel C Suhre K Fournier PE Mimivirus and the emerging concept of "giant" virus Virus Res 2006, 117(1):133-144 10.1016/j.virusres.2006.01.008 16469402
    • (2006) Virus Res , vol.117 , Issue.1 , pp. 133-144
    • Claverie, J.M.1    Ogata, H.2    Audic, S.3    Abergel, C.4    Suhre, K.5    Fournier, P.E.6
  • 8
    • 34548419233 scopus 로고    scopus 로고
    • Unique genes in giant viruses: Regular substitution pattern and anomalously short size
    • 1950904 17652424 10.1101/gr.6358607
    • Ogata H Claverie JM Unique genes in giant viruses: Regular substitution pattern and anomalously short size Genome Res 2007, 17(9):1353-1361 1950904 17652424 10.1101/gr.6358607
    • (2007) Genome Res , vol.17 , Issue.9 , pp. 1353-1361
    • Ogata, H.1    Claverie, J.M.2
  • 10
    • 33847737134 scopus 로고
    • Isolamento di un batteriofago di eccezionali dimensioni attivo su B.megatherium
    • Donelli G Isolamento di un batteriofago di eccezionali dimensioni attivo su B.megatherium Atti Accad Naz Lincei-Rend Clas Sci Fis Mat Nat 1968:95-97
    • (1968) Atti Accad Naz Lincei-Rend Clas Sci Fis Mat Nat , pp. 95-97
    • Donelli, G.1
  • 11
    • 27644439476 scopus 로고    scopus 로고
    • Gene and genome duplication in Acanthamoeba polyphaga Mimivirus
    • 1280231 16254344 10.1128/JVI.79.22.14095-14101.2005
    • Suhre K Gene and genome duplication in Acanthamoeba polyphaga Mimivirus J Virol 2005, 79(22):14095-14101 1280231 16254344 10.1128/ JVI.79.22.14095-14101.2005
    • (2005) J Virol , vol.79 , Issue.22 , pp. 14095-14101
    • Suhre, K.1
  • 12
    • 0035167322 scopus 로고    scopus 로고
    • Common origin of four diverse families of large eukaryotic DNA viruses
    • 114758 11689653 10.1128/JVI.75.23.11720-11734.2001
    • Iyer LM Aravind L Koonin EV Common origin of four diverse families of large eukaryotic DNA viruses J Virol 2001, 75(23):11720-11734 114758 11689653 10.1128/JVI.75.23.11720-11734.2001
    • (2001) J Virol , vol.75 , Issue.23 , pp. 11720-11734
    • Iyer, L.M.1    Aravind, L.2    Koonin, E.V.3
  • 14
    • 0029587471 scopus 로고
    • The human genome: Organization and evolutionary history
    • 10.1146/annurev.ge.29.120195.002305 8825483
    • Bernardi G The human genome: Organization and evolutionary history Annu Rev Genet 1995, 29:445-476 10.1146/annurev.ge.29.120195.002305 8825483
    • (1995) Annu Rev Genet , vol.29 , pp. 445-476
    • Bernardi, G.1
  • 15
    • 0026574207 scopus 로고
    • Recent evidence for evolution of the genetic code
    • 372862 1579111
    • Osawa S Jukes TH Watanabe K Muto A Recent evidence for evolution of the genetic code Microbiol Rev 1992, 56(1):229-264 372862 1579111
    • (1992) Microbiol Rev , vol.56 , Issue.1 , pp. 229-264
    • Osawa, S.1    Jukes, T.H.2    Watanabe, K.3    Muto, A.4
  • 16
    • 0030014818 scopus 로고    scopus 로고
    • Similarities and dissimilarities of phage genomes
    • 39151 8650182 10.1073/pnas.93.12.5854
    • Blaisdell BE Campbell AM Karlin S Similarities and dissimilarities of phage genomes Proc Natl Acad Sci U S A 1996, 93(12):5854-5859 39151 8650182 10.1073/pnas.93.12.5854
    • (1996) Proc Natl Acad Sci U S A , vol.93 , Issue.12 , pp. 5854-5859
    • Blaisdell, B.E.1    Campbell, A.M.2    Karlin, S.3
  • 17
    • 19944407592 scopus 로고    scopus 로고
    • Predicting coding potential from genome sequence: Application to betaherpesviruses infecting rats and mice
    • 1143683 15919911 10.1128/JVI.79.12.7570-7596.2005
    • Brocchieri L Kledal TN Karlin S Mocarski ES Predicting coding potential from genome sequence: Application to betaherpesviruses infecting rats and mice J Virol 2005, 79(12):7570-7596 1143683 15919911 10.1128/ JVI.79.12.7570-7596.2005
    • (2005) J Virol , vol.79 , Issue.12 , pp. 7570-7596
    • Brocchieri, L.1    Kledal, T.N.2    Karlin, S.3    Mocarski, E.S.4
  • 18
    • 0032173634 scopus 로고    scopus 로고
    • Global dinucleotide signatures and analysis of genomic heterogeneity
    • 10.1016/S1369-5274(98)80095-7 10066522
    • Karlin S Global dinucleotide signatures and analysis of genomic heterogeneity Curr Opin Microbiol 1998, 1(5):598-610 10.1016/ S1369-5274(98)80095-7 10066522
    • (1998) Curr Opin Microbiol , vol.1 , Issue.5 , pp. 598-610
    • Karlin, S.1
  • 19
    • 0025074342 scopus 로고
    • Contrasts in codon usage of latent versus productive genes of Epstein-Barr virus: Data and hypotheses
    • 247892 2166815
    • Karlin S Blaisdell BE Schachtel GA Contrasts in codon usage of latent versus productive genes of Epstein-Barr virus: Data and hypotheses J Virol 1990, 64(9):4264-4273 247892 2166815
    • (1990) J Virol , vol.64 , Issue.9 , pp. 4264-4273
    • Karlin, S.1    Blaisdell, B.E.2    Schachtel, G.A.3
  • 20
    • 0019949369 scopus 로고
    • Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs
    • 10.1016/0022-2836(82)90250-9 6750137
    • Ikemura T Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs J Mol Biol 1982, 158(4):573-597 10.1016/0022-2836(82)90250-9 6750137
    • (1982) J Mol Biol , vol.158 , Issue.4 , pp. 573-597
    • Ikemura, T.1
  • 21
    • 0028220048 scopus 로고
    • Synonymous codon usage in Drosophila melanogaster: Natural selection and translational accuracy
    • 1205897 8005445
    • Akashi H Synonymous codon usage in Drosophila melanogaster: Natural selection and translational accuracy Genetics 1994, 136(3):927-935 1205897 8005445
    • (1994) Genetics , vol.136 , Issue.3 , pp. 927-935
    • Akashi, H.1
  • 22
    • 25444502301 scopus 로고    scopus 로고
    • Gene codon composition determines differentiation-dependent expression of a viral capsid gene in keratinocytes in vitro and in vivo
    • 1265747 16166644 10.1128/MCB.25.19.8643-8655.2005
    • Zhao KN Gu W Fang NX Saunders NA Frazer IH Gene codon composition determines differentiation-dependent expression of a viral capsid gene in keratinocytes in vitro and in vivo Mol Cell Biol 2005, 25(19):8643-8655 1265747 16166644 10.1128/MCB.25.19.8643-8655.2005
    • (2005) Mol Cell Biol , vol.25 , Issue.19 , pp. 8643-8655
    • Zhao, K.N.1    Gu, W.2    Fang, N.X.3    Saunders, N.A.4    Frazer, I.H.5
  • 23
    • 0033670249 scopus 로고    scopus 로고
    • Horizontal gene transfer in bacterial and archaeal complete genomes
    • 310969 11076857 10.1101/gr.130000
    • Garcia-Vallve S Romeu A Palau J Horizontal gene transfer in bacterial and archaeal complete genomes Genome Res 2000, 10(11):1719-1725 310969 11076857 10.1101/gr.130000
    • (2000) Genome Res , vol.10 , Issue.11 , pp. 1719-1725
    • Garcia-Vallve, S.1    Romeu, A.2    Palau, J.3
  • 24
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: The complexity hypothesis
    • 22375 10097118 10.1073/pnas.96.7.3801
    • Jain R Rivera MC Lake JA Horizontal gene transfer among genomes: The complexity hypothesis Proc Natl Acad Sci U S A 1999, 96(7):3801-3806 22375 10097118 10.1073/pnas.96.7.3801
    • (1999) Proc Natl Acad Sci U S A , vol.96 , Issue.7 , pp. 3801-3806
    • Jain, R.1    Rivera, M.C.2    Lake, J.A.3
  • 25
    • 0032855518 scopus 로고    scopus 로고
    • Gene transfer, speciation, and the evolution of bacterial genomes
    • 10.1016/S1369-5274(99)00010-7
    • Lawrence G Gene transfer, speciation, and the evolution of bacterial genomes Curr Opin Microbiol 1999, 5:519-523 10.1016/S1369-5274(99)00010-7
    • (1999) Curr Opin Microbiol , vol.5 , pp. 519-523
    • Lawrence, G.1
  • 26
    • 3042849253 scopus 로고    scopus 로고
    • Biased biological functions of horizontally transferred genes in prokaryotic genomes
    • 10.1038/ng1381 15208628
    • Nakamura Y Itoh T Matsuda H Gojobori T Biased biological functions of horizontally transferred genes in prokaryotic genomes Nat Genet 2004, 36(7):760-766 10.1038/ng1381 15208628
    • (2004) Nat Genet , vol.36 , Issue.7 , pp. 760-766
    • Nakamura, Y.1    Itoh, T.2    Matsuda, H.3    Gojobori, T.4
  • 27
    • 34247565541 scopus 로고    scopus 로고
    • Distinctive features of large complex virus genomes and proteomes
    • 1829274 17360339 10.1073/pnas.0700429104
    • Mrazek J Karlin S Distinctive features of large complex virus genomes and proteomes Proc Natl Acad Sci U S A 2007, 104(12):5127-5132 1829274 17360339 10.1073/pnas.0700429104
    • (2007) Proc Natl Acad Sci U S A , vol.104 , Issue.12 , pp. 5127-5132
    • Mrazek, J.1    Karlin, S.2
  • 28
    • 0027958329 scopus 로고
    • Molecular evolution of herpesviruses: Genomic and protein sequence comparisons
    • 236651 8107249
    • Karlin S Mocarski ES Schachtel GA Molecular evolution of herpesviruses: genomic and protein sequence comparisons J Virol 1994, 68(3):1886-1902 236651 8107249
    • (1994) J Virol , vol.68 , Issue.3 , pp. 1886-1902
    • Karlin, S.1    Mocarski, E.S.2    Schachtel, G.A.3
  • 29
    • 0028028028 scopus 로고
    • Computational DNA sequence analysis
    • 10.1146/annurev.mi.48.100194.003155 7826021
    • Karlin S Cardon LR Computational DNA sequence analysis Annu Rev Microbiol 1994, 48:619-654 10.1146/annurev.mi.48.100194.003155 7826021
    • (1994) Annu Rev Microbiol , vol.48 , pp. 619-654
    • Karlin, S.1    Cardon, L.R.2
  • 30
    • 0038648028 scopus 로고    scopus 로고
    • Quantifying the species-specificity in genomic signatures, synonymous codon choice, amino acid usage and G+C content
    • 10.1016/S0378-1119(03)00581-X 12853136
    • Sandberg R Branden CI Ernberg I Coster J Quantifying the species-specificity in genomic signatures, synonymous codon choice, amino acid usage and G+C content Gene 2003, 311:35-42 10.1016/ S0378-1119(03)00581-X 12853136
    • (2003) Gene , vol.311 , pp. 35-42
    • Sandberg, R.1    Branden, C.I.2    Ernberg, I.3    Coster, J.4
  • 31
    • 20444424550 scopus 로고    scopus 로고
    • Unusual usage of AGG and TTG codons in humans and their viruses
    • 10.1016/j.gene.2005.04.001 15922516
    • Kliman RM Bernal CA Unusual usage of AGG and TTG codons in humans and their viruses Gene 2005, 352:92-99 10.1016/j.gene.2005.04.001 15922516
    • (2005) Gene , vol.352 , pp. 92-99
    • Kliman, R.M.1    Bernal, C.A.2
  • 32
    • 33645094378 scopus 로고    scopus 로고
    • Protein repertoire of double-stranded DNA bacteriophages
    • 10.1016/j.virusres.2006.01.015 16490276
    • Liu J Glazko G Mushegian A Protein repertoire of double-stranded DNA bacteriophages Virus Res 2006, 117(1):68-80 10.1016/ j.virusres.2006.01.015 16490276
    • (2006) Virus Res , vol.117 , Issue.1 , pp. 68-80
    • Liu, J.1    Glazko, G.2    Mushegian, A.3
  • 33
    • 0029985398 scopus 로고    scopus 로고
    • Asymmetric substitution patterns in the two DNA strands of bacteria
    • 8676740
    • Lobry JR Asymmetric substitution patterns in the two DNA strands of bacteria Mol Biol Evol 1996, 13(5):660-665 8676740
    • (1996) Mol Biol Evol , vol.13 , Issue.5 , pp. 660-665
    • Lobry, J.R.1
  • 34
    • 0033991967 scopus 로고    scopus 로고
    • Isochores and the evolutionary genomics of vertebrates
    • 10.1016/S0378-1119(99)00485-0 10607893
    • Bernardi G Isochores and the evolutionary genomics of vertebrates Gene 2000, 241(1):3-17 10.1016/S0378-1119(99)00485-0 10607893
    • (2000) Gene , vol.241 , Issue.1 , pp. 3-17
    • Bernardi, G.1
  • 35
    • 0032417093 scopus 로고    scopus 로고
    • Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes
    • 10.1007/PL00006428 9847411
    • McLean MJ Wolfe KH Devine KM Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes J Mol Evol 1998, 47(6):691-696 10.1007/PL00006428 9847411
    • (1998) J Mol Evol , vol.47 , Issue.6 , pp. 691-696
    • McLean, M.J.1    Wolfe, K.H.2    Devine, K.M.3
  • 36
    • 0032910674 scopus 로고    scopus 로고
    • Universal replication biases in bacteria
    • 10.1046/j.1365-2958.1999.01334.x 10216855
    • Rocha EP Danchin A Viari A Universal replication biases in bacteria Mol Microbiol 1999, 32(1):11-16 10.1046/j.1365-2958.1999.01334.x 10216855
    • (1999) Mol Microbiol , vol.32 , Issue.1 , pp. 11-16
    • Rocha, E.P.1    Danchin, A.2    Viari, A.3
  • 37
    • 0036709941 scopus 로고    scopus 로고
    • Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes?
    • 10.1016/S0966-842X(02)02420-4 12217498
    • Rocha E Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes? Trends Microbiol 2002, 10(9):393-395 10.1016/S0966-842X(02)02420-4 12217498
    • (2002) Trends Microbiol , vol.10 , Issue.9 , pp. 393-395
    • Rocha, E.1
  • 38
    • 0034888796 scopus 로고    scopus 로고
    • Ongoing evolution of strand composition in bacterial genomes
    • 11504858
    • Rocha EP Danchin A Ongoing evolution of strand composition in bacterial genomes Mol Biol Evol 2001, 18(9):1789-1799 11504858
    • (2001) Mol Biol Evol , vol.18 , Issue.9 , pp. 1789-1799
    • Rocha, E.P.1    Danchin, A.2
  • 39
    • 26844477403 scopus 로고    scopus 로고
    • Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes
    • 1239944 16203998 10.1073/pnas.0506465102
    • Suhre K Audic S Claverie JM Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes Proc Natl Acad Sci U S A 2005, 102(41):14689-14693 1239944 16203998 10.1073/pnas.0506465102
    • (2005) Proc Natl Acad Sci U S A , vol.102 , Issue.41 , pp. 14689-14693
    • Suhre, K.1    Audic, S.2    Claverie, J.M.3
  • 40
    • 0032584101 scopus 로고    scopus 로고
    • Strand compositional asymmetry in bacterial and large viral genomes
    • 19903 9520433 10.1073/pnas.95.7.3720
    • Mrazek J Karlin S Strand compositional asymmetry in bacterial and large viral genomes Proc Natl Acad Sci U S A 1998, 95(7):3720-3725 19903 9520433 10.1073/pnas.95.7.3720
    • (1998) Proc Natl Acad Sci U S A , vol.95 , Issue.7 , pp. 3720-3725
    • Mrazek, J.1    Karlin, S.2
  • 41
    • 0033013312 scopus 로고    scopus 로고
    • Strand-specific compositional asymmetries in double-stranded DNA viruses
    • 10.1016/S0168-1702(98)00139-7 10225270
    • Grigoriev A Strand-specific compositional asymmetries in double-stranded DNA viruses Virus Res 1999, 60(1):1-19 10.1016/S0168-1702(98)00139-7 10225270
    • (1999) Virus Res , vol.60 , Issue.1 , pp. 1-19
    • Grigoriev, A.1
  • 42
    • 0000992937 scopus 로고    scopus 로고
    • Patterns of genome organization in bacteria
    • 10.1126/science.279.5358.1827a
    • Freeman JM Plasterer TN Smith TF Mohr SC Patterns of genome organization in bacteria Science 1998, 279:1827a 10.1126/science.279.5358.1827a
    • (1998) Science , vol.279
    • Freeman, J.M.1    Plasterer, T.N.2    Smith, T.F.3    Mohr, S.C.4
  • 43
    • 55449094978 scopus 로고    scopus 로고
    • Evidence of a large novel gene pool associated with prokaryotic genomic islands
    • 1285063 16299586 10.1371/journal.pgen.0010062
    • Hsiao WW Ung K Aeschliman D Bryan J Finlay BB Brinkman FS Evidence of a large novel gene pool associated with prokaryotic genomic islands PLoS Genet 2005, 1(5):e62 1285063 16299586 10.1371/journal.pgen.0010062
    • (2005) PLoS Genet , vol.1 , Issue.5
    • Hsiao, W.W.1    Ung, K.2    Aeschliman, D.3    Bryan, J.4    Finlay, B.B.5    Brinkman, F.S.6
  • 44
    • 0032482924 scopus 로고    scopus 로고
    • Molecular archaeology of the Escherichia coli genome
    • 21352 9689094 10.1073/pnas.95.16.9413
    • Lawrence JG Ochman H Molecular archaeology of the Escherichia coli genome Proc Natl Acad Sci U S A 1998, 95(16):9413-9417 21352 9689094 10.1073/pnas.95.16.9413
    • (1998) Proc Natl Acad Sci U S A , vol.95 , Issue.16 , pp. 9413-9417
    • Lawrence, J.G.1    Ochman, H.2
  • 46
    • 0033770573 scopus 로고    scopus 로고
    • The expression and function of Epstein-Barr virus encoded latent genes
    • 1186976 11091847 10.1136/mp.53.5.238
    • Young LS Dawson CW Eliopoulos AG The expression and function of Epstein-Barr virus encoded latent genes Mol Pathol 2000, 53(5):238-247 1186976 11091847 10.1136/mp.53.5.238
    • (2000) Mol Pathol , vol.53 , Issue.5 , pp. 238-247
    • Young, L.S.1    Dawson, C.W.2    Eliopoulos, A.G.3
  • 47
    • 0029981145 scopus 로고    scopus 로고
    • Analysis of the complete DNA sequence of murine cytomegalovirus
    • 190980 8971012
    • Rawlinson WD Farrell HE Barrell BG Analysis of the complete DNA sequence of murine cytomegalovirus J Virol 1996, 70(12):8833-8849 190980 8971012
    • (1996) J Virol , vol.70 , Issue.12 , pp. 8833-8849
    • Rawlinson, W.D.1    Farrell, H.E.2    Barrell, B.G.3
  • 48
    • 0030010409 scopus 로고    scopus 로고
    • Inactivation of the very strong HCMV immediate early promoter by DNA CpG methylation in vitro
    • 8722321
    • Prosch S Stein J Staak K Liebenthal C Volk HD Kruger DH Inactivation of the very strong HCMV immediate early promoter by DNA CpG methylation in vitro Biol Chem Hoppe Seyler 1996, 377(3):195-201 8722321
    • (1996) Biol Chem Hoppe Seyler , vol.377 , Issue.3 , pp. 195-201
    • Prosch, S.1    Stein, J.2    Staak, K.3    Liebenthal, C.4    Volk, H.D.5    Kruger, D.H.6
  • 49
    • 0036139876 scopus 로고    scopus 로고
    • Murine cytomegalovirus m02 gene family protects against natural killer cell-mediated immune surveillance
    • 136824 11752177 10.1128/JVI.76.2.885-894.2002
    • Oliveira SA Park SH Lee P Bendelac A Shenk TE Murine cytomegalovirus m02 gene family protects against natural killer cell-mediated immune surveillance J Virol 2002, 76(2):885-894 136824 11752177 10.1128/ JVI.76.2.885-894.2002
    • (2002) J Virol , vol.76 , Issue.2 , pp. 885-894
    • Oliveira, S.A.1    Park, S.H.2    Lee, P.3    Bendelac, A.4    Shenk, T.E.5
  • 50
    • 0037123607 scopus 로고    scopus 로고
    • Direct recognition of cytomegalovirus by activating and inhibitory NK cell receptors
    • 10.1126/science.1070884 11950999
    • Arase H Mocarski ES Campbell AE Hill AB Lanier LL Direct recognition of cytomegalovirus by activating and inhibitory NK cell receptors Science 2002, 296(5571):1323-1326 10.1126/science.1070884 11950999
    • (2002) Science , vol.296 , Issue.5571 , pp. 1323-1326
    • Arase, H.1    Mocarski, E.S.2    Campbell, A.E.3    Hill, A.B.4    Lanier, L.L.5
  • 51
    • 33747268006 scopus 로고    scopus 로고
    • Genes of murine cytomegalovirus exist as a number of distinct genotypes
    • 10.1016/j.virol.2006.04.031 16781754
    • Smith LM Shellam GR Redwood AJ Genes of murine cytomegalovirus exist as a number of distinct genotypes Virology 2006, 352(2):450-465 10.1016/ j.virol.2006.04.031 16781754
    • (2006) Virology , vol.352 , Issue.2 , pp. 450-465
    • Smith, L.M.1    Shellam, G.R.2    Redwood, A.J.3
  • 52
    • 33746214684 scopus 로고    scopus 로고
    • Locus-specific gene expression pattern suggests a unique propagation strategy for a giant algal virus
    • 1563701 16840348 10.1128/JVI.00491-06
    • Allen MJ Forster T Schroeder DC Hall M Roy D Ghazal P Wilson WH Locus-specific gene expression pattern suggests a unique propagation strategy for a giant algal virus J Virol 2006, 80(15):7699-7705 1563701 16840348 10.1128/JVI.00491-06
    • (2006) J Virol , vol.80 , Issue.15 , pp. 7699-7705
    • Allen, M.J.1    Forster, T.2    Schroeder, D.C.3    Hall, M.4    Roy, D.5    Ghazal, P.6    Wilson, W.H.7
  • 53
    • 28944441133 scopus 로고    scopus 로고
    • Evolutionary history of the Coccolithoviridae
    • 10.1093/molbev/msj010 16151186
    • Allen MJ Schroeder DC Holden MT Wilson WH Evolutionary history of the Coccolithoviridae Mol Biol Evol 2006, 23(1):86-92 10.1093/molbev/msj010 16151186
    • (2006) Mol Biol Evol , vol.23 , Issue.1 , pp. 86-92
    • Allen, M.J.1    Schroeder, D.C.2    Holden, M.T.3    Wilson, W.H.4
  • 54
    • 33751250835 scopus 로고    scopus 로고
    • Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products
    • 1642625 16971431 10.1128/JVI.00940-06
    • Renesto P Abergel C Decloquement P Moinier D Azza S Ogata H Fourquet P Gorvel JP Claverie JM Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products J Virol 2006, 80(23):11678-11685 1642625 16971431 10.1128/JVI.00940-06
    • (2006) J Virol , vol.80 , Issue.23 , pp. 11678-11685
    • Renesto, P.1    Abergel, C.2    Decloquement, P.3    Moinier, D.4    Azza, S.5    Ogata, H.6    Fourquet, P.7    Gorvel, J.P.8    Claverie, J.M.9
  • 55
    • 0038392948 scopus 로고    scopus 로고
    • The SLAM family of immune-cell receptors
    • 10.1016/S0952-7915(03)00041-4 12787752
    • Veillette A Latour S The SLAM family of immune-cell receptors Curr Opin Immunol 2003, 15(3):277-285 10.1016/S0952-7915(03)00041-4 12787752
    • (2003) Curr Opin Immunol , vol.15 , Issue.3 , pp. 277-285
    • Veillette, A.1    Latour, S.2
  • 56
    • 16844383632 scopus 로고    scopus 로고
    • Apoptosis factor EI24/PIG8 is a novel endoplasmic reticulum-localized Bcl-2-binding protein which is associated with suppression of breast cancer invasiveness
    • 10.1158/0008-5472.CAN-04-3377 15781622
    • Zhao X Ayer RE Davis SL Ames SJ Florence B Torchinsky C Liou JS Shen L Spanjaard RA Apoptosis factor EI24/PIG8 is a novel endoplasmic reticulum-localized Bcl-2-binding protein which is associated with suppression of breast cancer invasiveness Cancer Res 2005, 65(6):2125-2129 10.1158/0008-5472.CAN-04-3377 15781622
    • (2005) Cancer Res , vol.65 , Issue.6 , pp. 2125-2129
    • Zhao, X.1    Ayer, R.E.2    Davis, S.L.3    Ames, S.J.4    Florence, B.5    Torchinsky, C.6    Liou, J.S.7    Shen, L.8    Spanjaard, R.A.9
  • 57
    • 14744279787 scopus 로고    scopus 로고
    • Virology: Gulliver among the Lilliputians
    • 10.1016/j.cub.2005.02.042 15753027
    • Koonin EV Virology: Gulliver among the Lilliputians Curr Biol 2005, 15(5):R167-9 10.1016/j.cub.2005.02.042 15753027
    • (2005) Curr Biol , vol.15 , Issue.5
    • Koonin, E.V.1
  • 58
    • 18844442298 scopus 로고    scopus 로고
    • Comment on "The 1.2-megabase genome sequence of Mimivirus"
    • author reply 1114 10.1126/science.1110820 15905382
    • Moreira D Lopez-Garcia P Comment on "The 1.2-megabase genome sequence of Mimivirus" Science 2005, 308(5725):1114; author reply 1114 10.1126/science.1110820 15905382
    • (2005) Science , vol.308 , Issue.5725 , pp. 1114
    • Moreira, D.1    Lopez-Garcia, P.2
  • 59
    • 25144506135 scopus 로고    scopus 로고
    • Viruses in the sea
    • 10.1038/nature04160 16163346
    • Suttle CA Viruses in the sea Nature 2005, 437(7057):356-361 10.1038/ nature04160 16163346
    • (2005) Nature , vol.437 , Issue.7057 , pp. 356-361
    • Suttle, C.A.1
  • 60
    • 0034716946 scopus 로고    scopus 로고
    • Genomic sequences of bacteriophages HK97 and HK022: Pervasive genetic mosaicism in the lambdoid bacteriophages
    • 10.1006/jmbi.2000.3729 10860721
    • Juhala RJ Ford ME Duda RL Youlton A Hatfull GF Hendrix RW Genomic sequences of bacteriophages HK97 and HK022: Pervasive genetic mosaicism in the lambdoid bacteriophages J Mol Biol 2000, 299(1):27-51 10.1006/ jmbi.2000.3729 10860721
    • (2000) J Mol Biol , vol.299 , Issue.1 , pp. 27-51
    • Juhala, R.J.1    Ford, M.E.2    Duda, R.L.3    Youlton, A.4    Hatfull, G.F.5    Hendrix, R.W.6
  • 62
    • 31144478606 scopus 로고    scopus 로고
    • The complete genome sequence of herpesvirus papio 2 (Cercopithecine herpesvirus 16) shows evidence of recombination events among various progenitor herpesviruses
    • 1346941 16414998 10.1128/JVI.80.3.1214-1221.2006
    • Tyler SD Severini A The complete genome sequence of herpesvirus papio 2 (Cercopithecine herpesvirus 16) shows evidence of recombination events among various progenitor herpesviruses J Virol 2006, 80(3):1214-1221 1346941 16414998 10.1128/JVI.80.3.1214-1221.2006
    • (2006) J Virol , vol.80 , Issue.3 , pp. 1214-1221
    • Tyler, S.D.1    Severini, A.2
  • 63
    • 0018558711 scopus 로고
    • The organization of the herpes simplex virus genomes
    • 10.1146/annurev.ge.13.120179.000325 231931
    • Roizman B The organization of the herpes simplex virus genomes Annu Rev Genet 1979, 13:25-57 10.1146/annurev.ge.13.120179.000325 231931
    • (1979) Annu Rev Genet , vol.13 , pp. 25-57
    • Roizman, B.1
  • 64
    • 0023066344 scopus 로고
    • A model for the development of the tandem repeat units in the EBV ori-P region and a discussion of their possible function
    • 10.1007/BF02100015 2822936
    • Karlin S Blaisdell BE A model for the development of the tandem repeat units in the EBV ori-P region and a discussion of their possible function J Mol Evol 1987, 25(3):215-229 10.1007/BF02100015 2822936
    • (1987) J Mol Evol , vol.25 , Issue.3 , pp. 215-229
    • Karlin, S.1    Blaisdell, B.E.2
  • 65
    • 0036308465 scopus 로고    scopus 로고
    • Identification and genomic analysis of a second species of nucleopolyhedrovirus isolated from Mamestra configurata
    • 10.1006/viro.2002.1411 12083822
    • Li L Donly C Li Q Willis LG Keddie BA Erlandson MA Theilmann DA Identification and genomic analysis of a second species of nucleopolyhedrovirus isolated from Mamestra configurata Virology 2002, 297(2):226-244 10.1006/viro.2002.1411 12083822
    • (2002) Virology , vol.297 , Issue.2 , pp. 226-244
    • Li, L.1    Donly, C.2    Li, Q.3    Willis, L.G.4    Keddie, B.A.5    Erlandson, M.A.6    Theilmann, D.A.7
  • 66
    • 33846551381 scopus 로고    scopus 로고
    • Biology's next revolution
    • 10.1038/445369a 17251963
    • Goldenfeld N Woese C Biology's next revolution Nature 2007, 445(7126):369 10.1038/445369a 17251963
    • (2007) Nature , vol.445 , Issue.7126 , pp. 369
    • Goldenfeld, N.1    Woese, C.2
  • 68
    • 13444306641 scopus 로고    scopus 로고
    • NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • (Database issue) 539979 15608248 10.1093/nar/gki025
    • Pruitt KD Tatusova T Maglott DR NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins Nucleic Acids Res 2005, 33(Database issue):D501-4 539979 15608248 10.1093/nar/gki025
    • (2005) Nucleic Acids Res , vol.33
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 71
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • 146917 9254694 10.1093/nar/25.17.3389
    • Altschul SF Madden TL Schaffer AA Zhang J Zhang Z Miller W Lipman DJ Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucleic Acids Res 1997, 25(17):3389-3402 146917 9254694 10.1093/ nar/25.17.3389
    • (1997) Nucleic Acids Res , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 73
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: A multiple sequence alignment method with reduced time and space complexity
    • 517706 15318951 10.1186/1471-2105-5-113
    • Edgar RC MUSCLE: A multiple sequence alignment method with reduced time and space complexity BMC Bioinformatics 2004, 5:113 517706 15318951 10.1186/1471-2105-5-113
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 74
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 308517 7984417 10.1093/nar/22.22.4673
    • Thompson JD Higgins DG Gibson TJ CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 1994, 22(22):4673-4680 308517 7984417 10.1093/nar/22.22.4673
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 75
    • 0028153788 scopus 로고
    • A mutation data matrix for transmembrane proteins
    • 10.1016/0014-5793(94)80429-X 8112466
    • Jones DT Taylor WR Thornton JM A mutation data matrix for transmembrane proteins FEBS Lett 1994, 339(3):269-275 10.1016/0014-5793(94)80429-X 8112466
    • (1994) FEBS Lett , vol.339 , Issue.3 , pp. 269-275
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 76
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
    • 10.1093/bib/5.2.150 15260895
    • Kumar S Tamura K Nei M MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment Brief Bioinform 2004, 5(2):150-163 10.1093/bib/5.2.150 15260895
    • (2004) Brief Bioinform , vol.5 , Issue.2 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 77
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • 10.1080/10635150390235520 14530136
    • Guindon S Gascuel O A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood Syst Biol 2003, 52(5):696-704 10.1080/10635150390235520 14530136
    • (2003) Syst Biol , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 78
    • 0033912561 scopus 로고    scopus 로고
    • A hypothesis for DNA viruses as the origin of eukaryotic replication proteins
    • 112226 10888648 10.1128/JVI.74.15.7079-7084.2000
    • Villarreal LP DeFilippis VR A hypothesis for DNA viruses as the origin of eukaryotic replication proteins J Virol 2000, 74(15):7079-7084 112226 10888648 10.1128/JVI.74.15.7079-7084.2000
    • (2000) J Virol , vol.74 , Issue.15 , pp. 7079-7084
    • Villarreal, L.P.1    DeFilippis, V.R.2


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