The complete genome sequence of herpesvirus papio 2 (Cercopithecine herpesvirus 16) shows evidence of recombination events among various progenitor herpesviruses

Journal of Virology

Volumn 80, Issue 3, 2006, Pages 1214-1221

  Tyler, Shaun D ^a   Severini, Alberto ^a,b,c  

^a PUBLIC HEALTH AGENCY OF CANADA   (Canada)

^b UNIVERSITY OF MANITOBA   (Canada)

^c Public Health Agency of Canada   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ARTICLE; B HERPESVIRUS; GC RICH SEQUENCE; GENE FUNCTION; GENE LOCATION; GENE SEQUENCE; GENETIC RECOMBINATION; GENOME ANALYSIS; HERPES SIMPLEX VIRUS; HERPES SIMPLEX VIRUS 1; HERPES SIMPLEX VIRUS 2; HERPES VIRUS; HERPESVIRUS PAPIO 2; INVERTED REPEAT; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; RL1 GENE; SA8 VIRUS; SEQUENCE HOMOLOGY; UL36 GENE; UL41 GENE; UL42 GENE; UL43 GENE; UL44 GENE; VIRUS GENE; VIRUS GENOME; VIRUS PATHOGENESIS; VIRUS STRAIN; VIRUS VIRULENCE;

ANIMALS; CERCOPITHECUS AETHIOPS; EVOLUTION, MOLECULAR; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PAPIO; PHYLOGENY; RECOMBINATION, GENETIC; SIMPLEXVIRUS; VERO CELLS;

ANIMALIA; BABOON HERPESVIRUS 2; CERCOPITHECINE HERPESVIRUS 1; HERPESVIRIDAE; HUMAN HERPESVIRUS 1; HUMAN HERPESVIRUS 2; PAPIO HAMADRYAS; PRIMATES; SIMPLEXVIRUS;

EID: 31144478606     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.80.3.1214-1221.2006     Document Type: Article

References (55)

1. Barnett, B. C., A. Dolan, E. A. Telford, A. J. Davison, and D. J. McGeoch. 1992. A novel herpes simplex virus gene (UL49A) encodes a putative membrane protein with counterparts in other herpesviruses. J. Gen. Virol. 73:2167-2171.
2. Beaudoing, E., S. Freier, J. R. Wyatt, J. M. Claverie, and D. Gautheret. 2000. Patterns of variant polyadenylation signal usage in human genes. Genome Res. 10:1001-1010.
3. Besemer, J., A. Lomsadze, and M. Borodovsky. 2001. GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res. 29:2607-2618.
4. Bigger, J. E., and D. W. Martin. 2003. The genome of herpesvirus papio 2 is closely related to the genomes of human herpes simplex viruses. J. Gen. Virol. 84:1411-1414.
5. 134.5, a gene nonessential for growth in culture. Science 250:1262-1266.
6. 134.5- mutants of herpes simplex virus 1. Proc. Natl. Acad. Sci. USA 92:10516-10520.
7. Clemens, M. J., and A. Elia. 1997. The double-stranded RNA-dependent protein kinase PKR: structure and function. J. Interferon Cytokine Res. 17:503-524.
8. Davidson, W. L., and K. Hummeler. 1960. B virus infection in man. Ann. N. Y. Acad. Sci. 85:970-979.
9. Davison, A. J., and N. M. Wilkie. 1981. Nucleotide sequences of the joint between the L and S segments of herpes simplex virus types 1 and 2. J. Gen. Virol. 55:315-331.
10. Deiss, L. P., J. Chou, and N. Frenkel. 1986. Functional domains within the a sequence involved in the cleavage-packaging of herpes simplex virus DNA. J. Virol. 59:605-618.
11. Dolan, A., E. McKie, A. R. MacLean, and D. J. McGeoch. 1992. Status of the ICP34.5 gene in herpes simplex virus type 1 strain 17. J. Gen. Virol. 73:971-973.
12. Dolan, A., F. E. Jamieson, C. Cunningham, B. C. Barnett, and D. J. McGeoch. 1998. The genome sequence of herpes simplex virus type 2. J. Virol. 72:2010-2021.
13. Eberle, R., D. H. Black, S. Lipper, and J. K. Hilliard. 1995. Herpesvirus papio 2, an SA8-like alpha-herpesvirus of baboons. Arch. Virol. 140:529-545.
14. Eberle, R., D. H. Black, T. W. Lehenbauer, and G. L. White. 1998. Shedding and transmission of baboon Herpesvirus papio 2 (HVP2) in a breeding colony. Lab. Anim. Sci. 48:23-28.
15. Everett, R. D., and M. L. Fenwick. 1990. Comparative DNA sequence analysis of the host shutoff genes of different strains of herpes simplex virus: type 2 strain HG52 encodes a truncated UL41 product. J. Gen. Virol. 71:1387-1390.
16. Gosztonyi, G., D. Falke, and H. Ludwig. 1992. Axonal and transsynaptic (transneuronal) spread of Herpesvirus simiae (B virus) in experimentally infected mice. Histol. Histopathol. 7:63-74.
17. Hall, J. D., J. S. Gibbs, D. M. Coen, and D. W. Mount. 1986. Structural organization and unusual codon usage in the DNA polymerase gene from herpes simplex virus type 1. DNA 5:281-288.
18. Han, M. G., J. R. Smiley, C. Thomas, and L. J. Saif. 2004. Genetic recombination between two genotypes of genogroup III bovine noroviruses (BoNVs) and capsid sequence diversity among BoNVs and Nebraska-like bovine enteric caliciviruses. J. Clin. Microbiol. 42:5214-5224.
19. Hazuda, D. J., H. C. Perry, A. M. Naylor, and W. L. McClements. 1991. Characterization of the herpes simplex virus origin binding protein interaction with OriS. J. Biol. Chem. 266:24621-24626.
20. Herold, B. C., R. J. Visalli, N. Susmarski, C. R. Brandt, and P. G. Spear. 1994. Glycoprotein C-independent binding of herpes simplex virus to cells requires cell surface heparan sulphate and glycoprotein B. J. Gen. Virol. 75:1211-1222.
21. Keeble, S. A., G. J. Christofinis, and W. Wood. 1958. Natural virus-B infection in rhesus monkeys. J. Pathol. Bacteriol. 76:189-199.
22. Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief. Bioinform. 5:150-163.
23. Levin, J. L., J. K. Hilliard, S. L. Lipper, T. M. Butler, and W. J. Goodwin. 1988. A naturally occurring epizootic of simian agent 8 in the baboon. Lab. Anim. Sci. 38:394-397.
24. Lole, K. S., R. C. Bollinger, R. S. Paranjape, D. Gadkari, S. S. Kulkarni, N. G. Novak, R. Ingersoll, H. W. Sheppard, and S. C. Ray. 1999. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 73:152-160.
25. Lukashin, A. V., and M. Borodovsky. 1998. GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res. 26:1107-1115.
26. MacLean, C. A., S. Efstathiou, M. L. Elliott, F. E. Jamieson, and D. J. McGeoch. 1991. Investigation of herpes simplex virus type 1 genes encoding multiply inserted membrane proteins. J. Gen. Virol. 72:897-906.
27. Malherbe, H., and M. Strickland-Cholmley. 1969. Simian herpesvirus SA8 from a baboon. Lancet 2:1427.
28. Malherbe, H., and M. Strickland-Cholmley. 1969. Virus from baboons. Lancet 2:1300.
29. Martino, M. A., G. B. Hubbard, T. M. Butler, and J. K. Hilliard. 1998. Clinical disease associated with simian agent 8 infection in the baboon. Lab. Anim. Sci. 48:18-22.
30. McGeoch, D. J., and B. C. Barnett. 1991. Neurovirulence factor. Nature 353:609.
31. McGeoch, D. J., A. Dolan, S. Donald, and D. H. Brauer. 1986. Complete DNA sequence of the short repeat region in the genome of herpes simplex virus type 1. Nucleic Acids Res. 14:1727-1745.
32. McGeoch, D. J., A. Dolan, S. Donald, and F. J. Rixon. 1985. Sequence determination and genetic content of the short unique region in the genome of herpes simplex virus type 1. J. Mol. Biol. 181:1-13.
33. McGeoch, D. J., C. Cunningham, G. McIntyre, and A. Dolan. 1991. Comparative sequence analysis of the long repeat regions and adjoining parts of the long unique regions in the genomes of herpes simplex viruses types 1 and 2. J. Gen. Virol. 72:3057-3075.
34. McGeoch, D. J., H. W. Moss, D. McNab, and M. C. Frame. 1987. DNA sequence and genetic content of the HindIII I region in the short unique component of the herpes simplex virus type 2 genome: identification of the gene encoding glycoprotein G, and evolutionary comparisons. J. Gen. Virol. 68:19-38.
35. McGeoch, D. J., M. A. Dalrymple, A. J. Davison, A. Dolan, M. C. Frame, D. McNab, L. J. Perry, J. E. Scott, and P. Taylor. 1988. The complete DNA sequence of the long unique region in the genome of herpes simplex virus type 1. J. Gen. Virol. 69:1531-1574.
36. McGeoch, D. J., S. Cook, A. Dolan, F. E. Jamieson, and E. A. Telford. 1995. Molecular phylogeny and evolutionary timescale for the family of mammalian herpesviruses. J. Mol. Biol. 247:443-458.
37. McNabb, D. S, and R. J. Courtney. 1992. Characterization of the large tegument protein (ICP1/2) of herpes simplex virus type 1. Virology 190:221-232.
38. McNearney, T. A., C. Odell, V. M. Holers, P. G. Spear, and J. P. Atkinson. 1987. Herpes simplex virus glycoproteins gC-1 and gC-2 bind to the third component of complement and provide protection against complement-mediated neutralization of viral infectivity. J. Exp. Med. 166:1525-1535.
39. McVoy, M. A., D. E. Nixon, J. K. Hur, and S. P. Adler. 2000. The ends on herpesvirus DNA replicative concatemers contain pac2 cis cleavage/packaging elements and their formation is controlled by terminal cis sequences. J. Virol. 74:1587-1592.
40. Mocarski, E. S., and B. Roizman. 1982. Structure and role of the herpes simplex virus DNA termini in inversion, circularization and generation of virion DNA. Cell 31:89-97.
41. Parris, D. S., A. Cross, L. Haarr, A. Orr, M. C. Frame, M. Murphy, D. J. McGeoch, and H. S. Marsden. 1988. Identification of the gene encoding the 65-kilodalton DNA-binding protein of herpes simplex virus type 1. J. Virol. 62:818-825.
42. Perelygina, L., L. Zhu, H. Zurkuhlen, R. Mills, M. Borodovsky, and J. K. Hilliard. 2003. Complete sequence and comparative analysis of the genome of herpes B virus (Cercopithecine herpesvirus 1) from a rhesus monkey. J. Virol. 77:6167-6177.
43. Perry, L. J., and D. J. McGeoch. 1988. The DNA sequences of the long repeat region and adjoining parts of the long unique region in the genome of herpes simplex virus type 1. J. Gen. Virol. 69:2831-2846.
44. Read, G. S. 1997. Control of mRNA stability during herpes simplex virus infections, p. 311-321. In J. B. Harford and D. R. Morris (ed.), mRNA metabolism and post-transcriptional gene regulation. Wiley-Liss Inc., New York, N.Y.
45. Ritchey, J. W., K. A. Ealey, M. E. Payton, and R. Eberle. 2002. Comparative pathology of infections with baboon and African green monkey alpha-herpesviruses in mice. J. Comp. Pathol. 127:150-161.
46. Ritchey, J. W., M. E. Payton, and R. Eberle. 2005. Clinicopathological characterization of monkey B virus (Cercopithecine herpesvirus 1) infection in mice. J. Comp. Pathol. 132:202-217.
47. Rogers, K. M., K. A. Ealey, J. W. Ritchey, D. H. Black, and R. Eberle. 2003. Pathogenicity of different baboon herpesvirus papio 2 isolates is characterized by either extreme neurovirulence or complete apathogenicity. J. Virol. 77:10731-10739.
48. Salminen, M. O., J. K. Carr, D. S. Burke, and F. E. McCutchan. 1995. Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. AIDS Res. Hum. Retrovir. 11:1423-1425.
49. Schachtel, G. A., P. Bucher, E. S. Mocarski, B. E. Blaisdell, and S. Karlin. 1991. Evidence for selective evolution in codon usage in conserved amino acid segments of human alphaherpesvirus proteins. J. Mol. Evol. 33:483-494.
50. Tyler, S. D., G. A. Peters, and A. Severini. 2005. Complete genome sequence of cercopithecine herpesvirus 2 (SA8) and comparison with other simplex-viruses. Virology 331:429-440.
51. van Regenmortel, M. H. V., C. M. Fauquet, D. H. L. Bishop, E. B. Carstens, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. J. McGeoch, C. R. Pringle, and R. B. Wickner (ed.). 2000. Virus taxonomy: seventh report of the International Committee on Taxonomy of Viruses, 1st ed. Academic Press, San Diego, Calif.
52. Varmuza, S. L., and J. R. Smiley. 1985. Signals for site-specific cleavage of HSV DNA: maturation involves two separate cleavage events at sites distal to the recognition sequences. Cell 41:793-802.
53. Wang, Z., Z. Liu, G. Zeng, S. Wen, Y. Qi, S. Ma, N. V. Naoumov, and J. Hou. 2005. A new intertype recombinant between genotypes C and D of hepatitis B virus identified in China. J. Gen. Virol. 86:985-990.
54. Weigler, B. J. 1992. Biology of B virus in macaque and human hosts: a review. Clin. Infect. Dis. 14:555-567.
55. Zeng, F. Y., C. W. Chan, M. N. Chan, J. D. Chen, K. Y. Chow, C. C. Hon, K. H. Hui, J. Li, V. Y. Li, C. Y. Wang, P. Y. Wang, Y. Guan, B. Zheng, L. L. Poon, K. H. Chan, K. Y. Yuen, J. S. Peiris, and F. C. Leung. 2003. The complete genome sequence of severe acute respiratory syndrome coronavirus strain HKU-39849 (HK-39). Exp. Biol. Med. (Maywood) 228:866-873.