Distinctive features of large complex virus genomes and proteomes

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 12, 2007, Pages 5127-5132

  Mrázek, Jan ^a   Karlin, Samuel ^b  

^a UNIVERSITY OF GEORGIA   (United States)

^b STANFORD UNIVERSITY   (United States)

Author keywords

Frequent oligonucleotides and peptides; Genome signature; Mimivirus

Indexed keywords

ASPARTIC ACID; GLUTAMIC ACID; OLIGONUCLEOTIDE; PHENYLALANINE; PROTEOME; TYROSINE; AMINO ACID; PEPTIDE; VIRUS RNA;

ARTICLE; BACTERIOPHAGE; CANARYPOX VIRUS; CYANOPHAGE; CYTOMEGALOVIRUS; DNA VIRUS; EVOLUTION; HERPES VIRUS; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN FUNCTION; PROTEIN STRUCTURE; VIRUS GENOME; WHITE SPOT SYNDROME VIRUS; BASE PAIRING; CODON; DNA BASE COMPOSITION; GENETICS; HYDROPHOBICITY;

BACTERIA (MICROORGANISMS); DNA VIRUSES; EUKARYOTA; MIMIVIRUS;

AMINO ACIDS; BASE COMPOSITION; BASE PAIRING; CODON; DNA VIRUSES; GENOME, VIRAL; HYDROPHOBICITY; OLIGONUCLEOTIDES; PEPTIDES; PROMOTER REGIONS (GENETICS); PROTEOME; RNA, VIRAL;

EID: 34247565541     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0700429104     Document Type: Article

References (28)

1. Raoult D, Audic S, Robert C, Abergel C, Renesto P, Ogata H, La Scola B, Suzan M, Claverie JM (2004) Science 306:1344-1350.
2. Koonin EV, Dolja VV (2006) Virus Res 117:1-4.
3. Suhre K, Audic S, Claverie JM (2005) Proc Natl Acad Sci USA 102:14689-14693.
4. Claverie, JM (2006) Genome Biol 7:110-115.
5. Forterre P (2006) Virus Res 117:5-16.
6. Gorbalenya AE, Enjuanes L, Ziebuhr J, Snijder EJ (2006) Virus Res 117:17-37.
7. Dolja VV, Kreuze JF, Valkonen JP (2006) Virus Res 117:38-51.
8. Subak-Sharpe H, Burk RR, Crawford LV, Morrison JM, Hay J, Keir HM (1966) Cold Spring Harbor Symp Quant Biol 31:737-748.
9. Morrison JM, Keir HM, Subek-Sharpe H, Crawford LV (1967) J Gen Virol 1:101-108.
10. Russel GJ, Walker PMB, Elton RA, Subek-Sharpe JH (1916) J Mol Biol 108:1-28.
11. Blaisdell BE, Campbell AM, Karlin S (1996) Proc Natl Acad Sci USA 93:5854-5859.
12. Karlin S (1998) Curr Biol 1:598-610.
13. Karlin S, Cardon LR (1994) Ann Rev Microbiol 48:619-654.
14. Mrázek J, Bhaya D, Grossman AR, Karlin S (2001) Nucleic Acids Res 29:1590-1601.
15. Shpaer EG, Mullins JI (1990) Nucleic Acids Res 18:5793-5797.
16. Karlin S, Doerfler W, Cardon LR (1994) J Virol 68:2889-2897.
17. Campbell AM, Mrázek J, Karlin S (1999) Proc Natl Acad Sci USA 96:9184-9189.
18. Suzan-Monti M, La Scola B, Raoult D (2006) Virus Res 117:145-155.
19. Shepherd JCW (1981) Proc Natl Acad Sci USA 78:1596-1600.
20. Kypr J, Mrázek J (1987) Int J Biol Macromol 9:49-53.
21. Karlin S, MY, Leung (1991) Ann Appl Probability 4:513-538.
22. Karlin S, Mrázek J, AM, Campbell (1996) Nucleic Acids Res 24:4263-4272.
23. Karlin S (2005) Proc Natl Acad Sci USA 102:13355-13362.
24. Jung JU, Desrosiers RC (1994) Virology 204:751-758.
25. Lee H, Choi, JK, Li M, Kaye K, Kieff E, Jung JU (1999) J Virol 73:3913-3919.
26. Karlin S, Brocchieri L, Bergman A, Mrázek J, Gentles AJ (2002) Proc Natl Acad Sci USA 99:333-338.
27. Dunker AK, MS, Cortese, P Romero, LM, Iakoucheva, VN, Uversky (2005) FEBS J 272:5129-5148.
28. Wilson WH, Schroeder DC, Allen MJ, Holden MTG, Parkhill J, Barrell BG, Churcher C, Hamlin N, Mungall K, Norbertczak H, et al. (2005) Science 309:1090-1092.