Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 24, 2005, Pages 8633-8638

  Persson, Staffan ^a   Wei, Hairong ^b   Milne, Jennifer ^a   Page, Grier P ^b   Somerville, Christopher R ^a,c  

^a GEOPHYSICAL LABORATORY   (United States)

^b UNIVERSITY OF ALABAMA AT BIRMINGHAM   (United States)

^c STANFORD UNIVERSITY   (United States)

Author keywords

Arabidopsis; Cell wall; Coexpression; Xylem

Indexed keywords

CELLULOSE; CELLULOSE SYNTHASE; SYNTHETASE; UNCLASSIFIED DRUG;

ARABIDOPSIS; ARTICLE; CELL WALL; DNA MICROARRAY; GENE EXPRESSION; GENE IDENTIFICATION; MUTANT; NONHUMAN; PHENOTYPE; PLANT GENETICS; PRIORITY JOURNAL; REGRESSION ANALYSIS;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CELLULOSE; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; DNA MUTATIONAL ANALYSIS; GENES, PLANT; GLUCOSYLTRANSFERASES; GLYCOSYLTRANSFERASES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHENOTYPE; REGRESSION ANALYSIS;

ARABIDOPSIS;

EID: 20844445318     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0503392102     Document Type: Article

References (39)

1. Doblin, M. S., Kurek, I., Jacob-Wilk, D. & Delmer, D. P. (2002) Plant Cell Physiol. 43, 1407-1420.
2. Somerville, C, Bauer, S., Brininstool, G., Facette, M., Hamann, T., Milne, J., Osborne, E., Paredez, A., Persson, S., Raab, T., et al. (2004) Science 306, 2206-2211.
3. Arioli, T., Peng, L., Betzner, A. S., Burn, J., Wittke, W., Herth, W., Camilleri, C., Höfte, H., Plazinski, J., Birch, R., et al. (1998) Science 279, 717-720.
4. Scheible, W. R., Eshed, R., Richmond, T., Delmer, D. & Somerville, C. (2001) Proc. Natl. Acad. Sci. USA 98, 10079-10084.
5. Fagard, M., Desnos, T., Desprez, T., Goubet, F., Refregier, G., Mouille, G., McCann, M., Rayon, C., Vernhettes, S. & Höfte, H. (2000) Plant Cell 12, 2409-2424.
6. Taylor, N. G., Laurie, S. & Turner, S. R. (2000) Plant Cell 12, 2529-2540.
7. Taylor, N. G., Scheible, W. R., Cutler, S., Somerville, C. R. & Turner, S. R. (1999) Plant Cell 11, 769-780.
8. Tanaka, K., Murata, K., Yamazaki, M., Onosato, K., Miyao, A. & Hirochika, H. (2003) Plant Physiol. 133, 73-83.
9. Taylor, N. G., Howells, R. M., Huttly, A. K., Vickers, K. & Turner, S. R. (2003) Proc. Natl. Acad. Sci. USA 100, 1450-1455.
10. Nicol, F., His, L, Jauneau, A., Vernhettes, S., Canut, H. & Höfte, H. (1998) EMBO J. 17, 5563-5576.
11. Schindelman, G., Morikami, A., Jung, J., Baskin, T. I., Carpita, N. C., Derbyshire, P., McCann, M. C. & Benfey, P. N. (2001) Genes Dev. 15, 1115-1127.
12. Li, Y., Qian, Q., Zhou, Y., Yan, M., Sun, L., Zhang, M., Fu, Z., Wang, Y., Han, B., Pang, X., et al. (2003) Plant Cell 15, 2020-2031.
13. Zhong, R., Kays, S. J., Schroeder, B. P. & Ye, Z. H. (2002) Plant Cell 14, 165-179.
14. Pagant, S., Bichet, A., Sugimoto, K., Lerouxel, O., Desprez, T., McCann, M., Lerouge, P., Vernhettes, S. & Höfte, H. (2002) Plant Cell 14, 2001-2013.
15. Gillmor, C. S., Poindexter, P., Lorieau, J., Palcic, M. M. & Somerville, C. (2002) J. Cell Biol. 156, 1003-1013.
16. Bichet, A., Desnos, T., Turner, S., Grandjean, O. & Höfte, H. (2001) Plant J. 25, 137-148.
17. Eisen, M. B., Spellman, P. T., Brown, P. O. & Botstein, D. (1998) Proc. Natl. Acad. Sci. USA 95, 14863-14868.
18. Kemmeren, P., van Berkum, N. L., Vilo, J., Bijma, T., Donders, R., Brazma, A. & Holstege, F. C. (2002) Mol. Cell 9, 1133-1143.
19. Stuart, J. M., Segal, E., Koller, D. & Kim, S. K. (2003) Science 302, 249-255.
20. Lee, H. K., Hsu, A. K., Sajdak, J., Qin, J. & Pavlidis, P. (2004) Genome Res. 14, 1085-1094.
21. Burton, R. A., Shirley, N. J., King. B. J., Harvey, A. J. & Fincher, G. B. (2004) Plant Physiol, 134, 224-236.
22. Dabrowski, M., Aerts, S., Van Hummelen, P., Craessaerts, K., De Moor, B., Annaert, W., Moreau, Y. & De Strooper, B. (2003) J. Neurochem. 85, 1279-1288.
23. Kuo, W. P., Jenssen, T. K., Butte, A. J., Ohno-Machado, L. & Kohane, I. S. (2002) Bioinformatics 18, 405-412.
24. Craigon, D. J., James, N., Okyere, J., Higgins, J., Jotham, J. & May, S. (2004) Nucleic Acids Res. 32, D575-D577.
25. Redman, J. C., Haas, B. J., Tanimoto, G. & Town, C. D. (2004) Plant J. 38, 545-561.
26. Irizarry, R. A., Hobbs, B., Collin, F., Beazer-Barclay, Y. D., Antonellis, K. J., Schert U. & Speed, T. P. (2003) Biostatistics 4, 249-264.
27. Chakravarti, I. M., Laha, R. G. & Roy, J. (1967) Handbook of Methods of Applied Statistics (Wiley, New York), Vol. 1, pp. 392-394.
28. Alonso, J., Stepanova, A., Leisse, T., Kim, C., Chen, H., Shinn, P., Stevenson, D., Zimmerman, J., Barajas, P., Cheuk, R., et al. (2003) Science 301, 653-657.
29. Kemsley, E. K. (1998) Discriminant Analysis and Class Modelling of Spectroscopic Data (Wiley, New York), p. 179.
30. Updegraff, D. M. (1969) Anal. Biochem. 32, 420-424.
31. Ueda, H. R., Hayashi, S., Matsuyama, S., Yomo, T., Hashimoto, S., Kay, S. A., Hogenesch, J. B. & Iino, M. (2004) Proc. Natl. Acad. Sci. USA 101, 3765-3769.
32. Turner, S. R. & Somerville, C. R. (1997) Plant Cell 9, 689-701.
33. Bouton, S., Leboeuf, E., Mouille, G., Leydecker, M. T., Talbotec, J., Granier, F., Lahaye, M., Hofte, H. & Truong, H. N. (2002) Plant Cell 14, 2577-2590.
34. Mouille, G., Robin, S., Lecomte, M., Pagant, S. & Höfte, H. (2003) Plant J. 35, 393-404.
35. Nemhauser, J. L. & Chory, J. (2004) J. Exp. Bot. 55, 265-270.
36. Demura, T., Tashiro, G., Horiguchi, G., Kishimoto, N., Kubo, M., Matsuoka, N., Minami, A., Nagata-Hiwatashi, M., Nakamura, K., Okamura, Y., et al. (2002) Proc. Natl. Acad. Sci. USA 99, 15794-15799.
37. Gibbons, F. D. & Roth, F. P. (2002) Genome Res. 12, 1574-1581.
38. Page, G. P., Edwards, J. W., Barnes, S., Weindruch, R. & Allison, D. B. (2003) Nutrition 19, 997-1000.
39. Goda, H., Shimada, Y., Asami, T., Fujioka, S. & Yoshida, S. (2002) Plant Physiol. 130, 1319-1334.