Small non-coding RNAs, mammalian cells, and viruses: Regulatory interactions?

Retrovirology

Volumn 4, Issue , 2007, Pages

  Yeung, Man Lung ^a   Benkirane, Monsef ^b   Jeang, Kuan Teh ^a  

^a NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

^b INSTITUTE OF HUMAN GENETICS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; RNA BINDING PROTEIN; SMALL INTERFERING RNA; UNTRANSLATED RNA;

GENE CONTROL; GENE EXPRESSION; GENE SILENCING; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN T CELL LEUKEMIA VIRUS 1; MAMMAL CELL; NONHUMAN; NOTE; RETROVIRUS; RNA INTERFERENCE; VIRUS CELL INTERACTION; VIRUS INFECTION; VIRUS REPLICATION; ANIMAL; EDITORIAL; GENE EXPRESSION REGULATION; GENETICS; MAMMAL; METABOLISM; PHYSIOLOGY; VIRAL PHENOMENA AND FUNCTIONS; VIRUS;

MAMMALIA;

ANIMALS; GENE EXPRESSION REGULATION, VIRAL; HUMANS; MAMMALS; MICRORNAS; VIRAL PHYSIOLOGY; VIRUSES;

EID: 37749040567     PISSN: None     EISSN: 17424690     Source Type: Journal    
DOI: 10.1186/1742-4690-4-74     Document Type: Note

References (60)

1. Backofen R Bernhart SH Flamm C Fried C Fritzsch G Hackermuller J Hertel J Hofacker IL Missal K Mosig A Prohaska SJ Rose D Stadler PF Tanzer A Washietl S Will S RNAs everywhere: Genome-wide annotation of structured RNAs J Exp Zoolog B Mol Dev Evol 2007, 308:1-25 17171697
2. Mattick JS Makunin IV Non-coding RNA Hum Mol Genet 2006, 15 Spec No 1:R17-R29 10.1093/hmg/ddl046 16651366
3. Washietl S Hofacker IL Lukasser M Huttenhofer A Stadler PF Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome Nat Biotechnol 2005, 23:1383-1390 10.1038/nbt1144 16273071
4. Rana TM Illuminating the silence: Understanding the structure and function of small RNAs Nature Reviews Molecular Cell Biology 2007, 8:23-36 10.1038/nrm2085 17183358
5. Berkhout B Jeang KT RISCy business: MicroRNAs, pathogenesis, and viruses J Biol Chem 2007, 282:26641-26645 10.1074/jbc.R700023200 17627941
6. Shaulian E Karin M AP-1 as a regulator of cell life and death Nat Cell Biol 2002, 4:E131-E136 10.1038/ncb0502-e131 11988758
7. Mallette FA Ferbeyre G The DNA damage signaling pathway connects oncogenic stress to cellular senescence Cell Cycle 2007, 6:1831-1836 17671427
8. Matsuoka M Jeang KT Human T-cell leukaemia virus type 1 (HTLV-1) infectivity and cellular transformation Nat Rev Cancer 2007, 7:270-280 10.1038/nrc2111 17384582
9. Xiao L Rao JN Zou T Liu L Marasa BS Chen J Turner DJ Passaniti A Wang JY Induced JunD in intestinal epithelial cells represses CDK4 transcription through its proximal promoter region following polyamine depletion Biochem J 2007, 403:573-581 10.1042/BJ20061436 17253961 1876376
10. Jeang KT Widen SG Semmes OJ Wilson SH HTLV-I trans-activator protein, tax, is a trans-repressor of the human beta-polymerase gene Science 1990, 247:1082-1084 10.1126/science.2309119 2309119
11. Li LC Okino ST Zhao H Pookot D Place RF Urakami S Enokida H Dahiya R Small dsRNAs induce transcriptional activation in human cells Proc Natl Acad Sci U S A 2006, 103:17337-17342 1859931 17085592 10.1073/ pnas.0607015103
12. Bhattacharyya SN Habermacher R Martine U Closs EI Filipowicz W Relief of microRNA-mediated translational repression in human cells subjected to stress Cell 2006, 125:1111-1124 10.1016/j.cell.2006.04.031 16777601
13. Vasudevan S Steitz JA AU-rich-element-mediated upregulation of translation by FXR1 and Argonaute 2 Cell 2007, 128:1105-1118 10.1016/ j.cell.2007.01.038 17382880
14. Leung AK Sharp PA microRNAs: A safeguard against turmoil? Cell 2007, 130:581-585 10.1016/j.cell.2007.08.010 17719533
15. Jopling CL Yi MK Lancaster AM Lemon SM Sarnow P Modulation of hepatitis C virus RNA abundance by a liver-specific microRNA Science 2005, 309:1577-1581 10.1126/science.1113329 16141076
16. Berkhout B Silverman RH Jeang KT Tat trans-activates the human immunodeficiency virus through a nascent RNA target Cell 1989, 59:273-282 10.1016/0092-8674(89)90289-4 2478293
17. Dingwall C Ernberg I Gait MJ Green SM Heaphy S Karn J Lowe AD Singh M Skinner MA Valerio R Human immunodeficiency virus 1 tat protein binds trans-activation-responsive region (TAR) RNA in vitro Proc Natl Acad Sci U S A 1989, 86:6925-6929 297963 2476805 10.1073/pnas.86.18.6925
18. Gatignol A Buckler-White A Berkhout B Jeang KT Characterization of a human TAR RNA-binding protein that activates the HIV-1 LTR Science 1991, 251:1597-1600 10.1126/science.2011739 2011739
19. Gatignol A Laine S Clerzius G Dual role of TRBP in HIV replication and RNA interference: Viral diversion of a cellular pathway or evasion from antiviral immunity? Retrovirology 2005, 2:65 1282568 16253139 10.1186/ 1742-4690-2-65
20. Forstemann K Tomari Y Du T Vagin VV Denli AM Bratu DP Klattenhoff C Theurkauf WE Zamore PD Normal microRNA maturation and germ-line stem cell maintenance requires Loquacious, a double-stranded RNA-binding domain protein PLoS Biol 2005, 3:e236 1141267 15918770 10.1371/ journal.pbio.0030236
21. Chendrimada TP Gregory RI Kumaraswamy E Norman J Cooch N Nishikura K Shiekhattar R TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing Nature 2005, 436:740-744 10.1038/ nature03868 15973356
22. Haase AD Jaskiewicz L Zhang H Laine S Sack R Gatignol A Filipowicz W TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing EMBO Rep 2005, 6:961-967 1369185 16142218 10.1038/sj.embor.7400509
23. Klase Z Kale P Winograd R Gupta MV Heydarian M Berro R McCaffrey T Kashanchi F HIV-1 TAR element is processed by Dicer to yield a viral micro-RNA involved in chromatin remodeling of the viral LTR BMC Mol Biol 2007, 8:63 1955452 17663774 10.1186/1471-2199-8-63
24. Cullen BR Is RNA interference involved in intrinsic antiviral immunity in mammals? Nat Immunol 2006, 7:563-567 10.1038/ni1352 16715068
25. UNAIDS: The Joint United Nations Programme on HIV/AIDS 2007 http://www.unaids.org
26. Cuzick J Viruses and cancer J Epidemiol Biostat 2000, 5:143-152 11051110
27. Yang N Kazazian HH Jr. L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells Nat Struct Mol Biol 2006, 13:763-771 10.1038/nsmb1141 16936727
28. Watanabe T Takeda A Tsukiyama T Mise K Okuno T Sasaki H Minami N Imai H Identification and characterization of two novel classes of small RNAs in the mouse germline: Retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes Genes Dev 2006, 20:1732-1743 1522070 16766679 10.1101/gad.1425706
29. Carmell MA Girard A van de Kant HJ Bourc'his D Bestor TH de Rooij DG Hannon GJ MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline Dev Cell 2007, 12:503-514 10.1016/ j.devcel.2007.03.001 17395546
30. Hariharan M Scaria V Pillai B Brahmachari SK Targets for human encoded microRNAs in HIV genes Biochem Biophys Res Commun 2005, 337:1214-1218 10.1016/j.bbrc.2005.09.183 16236258
31. Scaria V Hariharan M Maiti S Pillai B Brahmachari SK Host-virus interaction: A new role for microRNAs Retrovirology 2006, 3:68 1626483 17032463 10.1186/1742-4690-3-68
32. Huang J Wang F Argyris E Chen K Liang Z Tian H Huang W Squires K Verlinghieri G Zhang H Cellular microRNAs contribute to HIV-1 latency in resting primary CD4(+) T lymphocytes Nat Med 2007, 13:1241-1247 10.1038/ nm1639 17906637
33. Lecellier CH Dunoyer P Arar K Lehmann-Che J Eyquem S Himber C Saib A Voinnet O A cellular microRNA mediates antiviral defense in human cells Science 2005, 308:557-560 10.1126/science.1108784 15845854
34. Watanabe Y Kishi A Yachie N Kanai A Tomita M Computational analysis of microRNA-mediated antiviral defense in humans FEBS Lett 2007, 581:4603-4610 10.1016/j.febslet.2007.08.049 17825824
35. Triboulet R Mari B Lin YL Chable-Bessia C Bennasser Y Lebrigand K Cardinaud B Maurin T Barbry P Baillat V Reynes J Corbeau P Jeang KT Benkirane M Suppression of microRNA-silencing pathway by HIV-1 during virus replication Science 2007, 315:1579-1582 10.1126/science.1136319 17322031
36. Otsuka M Jing Q Georgel P New L Chen J Mols J Kang YJ Jiang Z Du X Cook R Das SC Pattnaik AK Beutler B Han J Hypersusceptibility to vesicular stomatitis virus infection in Dicer1-deficient mice is due to impaired miR24 and miR93 expression Immunity 2007, 27:123-134 10.1016/ j.immuni.2007.05.014 17613256
37. Muller S Imler JL Dicing with viruses: MicroRNAs as antiviral factors Immunity 2007, 27:1-3 10.1016/j.immuni.2007.07.003 17663977
38. Skalsky RL Samols MA Plaisance KB Boss IW Riva A Lopez MC Baker HV Renne R Kaposi's Sarcoma-associated Herpesvirus Encodes an Ortholog of miR-155 J Virol 2007 [Epub ahead of print]
39. Westerhout EM ter BO Berkhout B The virion-associated incoming HIV-1 RNA genome is not targeted by RNA interference Retrovirology 2006, 3:57 1569866 16948865 10.1186/1742-4690-3-57
40. Ding SW Voinnet O Antiviral immunity directed by small RNAs Cell 2007, 130:413-426 10.1016/j.cell.2007.07.039 17693253
41. Bennasser Y Le SY Benkirane M Jeang KT Evidence that HIV-1 encodes an siRNA and a suppressor of RNA silencing Immunity 2005, 22:607-619 10.1016/j.immuni.2005.03.010 15894278
42. Haasnoot J de VW Geutjes EJ Prins M de HP Berkhout B The Ebola virus VP35 protein is a suppressor of RNA silencing PLoS Pathog 2007, 3:e86 1894824 17590081 10.1371/journal.ppat.0030086
43. Lin J Cullen BR Analysis of the Interaction of Primate Retroviruses with the Human RNA Interference Machinery J Virol 2007 [Epub ahead of print]
44. Rana TM Jeang KT Biochemical and functional interactions between HIV-1 Tat protein and TAR RNA Arch Biochem Biophys 1999, 365:175-185 10.1006/ abbi.1999.1206 10328810
45. Brady J Kashanchi F Tat gets the "green" light on transcription initiation Retrovirology 2005, 2:69 1308864 16280076 10.1186/1742-4690-2-69
46. Karn J Tackling Tat J Mol Biol 1999, 293:235-254 10.1006/jmbi.1999.3060 10550206
47. Lu S Cullen BR Adenovirus VA1 noncoding RNA can inhibit small interfering RNA and MicroRNA biogenesis J Virol 2004, 78:12868-12876 524998 15542639 10.1128/JVI.78.23.12868-12876.2004
48. Andersson MG Haasnoot PC Xu N Berenjian S Berkhout B Akusjarvi G Suppression of RNA interference by adenovirus virus-associated RNA J Virol 2005, 79:9556-9565 1181602 16014917 10.1128/ JVI.79.15.9556-9565.2005
49. Bennasser Y Yeung ML Jeang KT HIV-1 TAR RNA subverts RNA interference in transfected cells through sequestration of TAR RNA-binding protein, TRBP J Biol Chem 2006, 281:27674-27678 10.1074/jbc.C600072200 16887810
50. Cobb BS Nesterova TB Thompson E Hertweck A O'Connor E Godwin J Wilson CB Brockdorff N Fisher AG Smale ST Merkenschlager M T cell lineage choice and differentiation in the absence of the RNase III enzyme Dicer J Exp Med 2005, 201:1367-1373 10.1084/jem.20050572 15867090
51. Das AT Brummelkamp TR Westerhout EM Vink M Madiredjo M Bernards R Berkhout B Human immunodeficiency virus type 1 escapes from RNA interference-mediated inhibition J Virol 2004, 78:2601-2605 369246 14963165 10.1128/JVI.78.5.2601-2605.2004
52. Westerhout EM Ooms M Vink M Das AT Berkhout B HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome Nucleic Acids Res 2005, 33:796-804 548362 15687388 10.1093/nar/gki220
53. Yeung ML Bennasser Y Myers TG Jiang G Benkirane M Jeang KT Changes in microRNA expression profiles in HIV-1-transfected human cells Retrovirology 2005, 2:81 1352379 16381609 10.1186/1742-4690-2-81
54. Chen D Wang M Zhou S Zhou Q HIV-1 Tat targets microtubules to induce apoptosis, a process promoted by the pro-apoptotic Bcl-2 relative Bim EMBO J 2002, 21:6801-6810 139103 12486001 10.1093/emboj/cdf683
55. Giacca M HIV-1 Tat, apoptosis and the mitochondria: A tubulin link? Retrovirology 2005, 2:7 549042 15698476 10.1186/1742-4690-2-7
56. de MJ Carre M Barbier P Campbell GR Lancelot S Opi S Esquieu D Watkins JD Prevot C Braguer D Peyrot V Loret EP HIV-1 Tat protein enhances microtubule polymerization Retrovirology 2005, 2:5 549075 15691386 10.1186/1742-4690-2-5
57. Satou Y Yasunaga J Yoshida M Matsuoka M HTLV-I basic leucine zipper factor gene mRNA supports proliferation of adult T cell leukemia cells Proc Natl Acad Sci U S A 2006, 103:720-725 1334651 16407133 10.1073/ pnas.0507631103
58. Cavanagh MH Landry S Audet B rpin-Andre C Hivin P Pare ME Thete J Wattel E Marriott SJ Mesnard JM Barbeau B HTLV-I antisense transcripts initiating in the 3'LTR are alternatively spliced and polyadenylated Retrovirology 2006, 3:15 1459196 16512901 10.1186/1742-4690-3-15
59. Landry S Halin M Lefort S Audet B Vaquero C Mesnard JM Barbeau B Detection, characterization and regulation of antisense transcripts in HIV-1 Retrovirology 2007, 4:71 10.1186/1742-4690-4-71 17910760
60. Ludwig LB Ambrus JL Jr. Krawczyk KA Sharma S Brooks S Hsiao CB Schwartz SA Human Immunodeficiency Virus-Type 1 LTR DNA contains an intrinsic gene producing antisense RNA and protein products Retrovirology, 2006, 3:80 1654176 17090330 10.1186/1742-4690-3-80