Metabolite analysis for the comparison of irrigated and non-irrigated field grown tomato of varying genotype

Metabolomics

Volumn 3, Issue 3, 2007, Pages 289-295

  Semel, Yaniv ^a   Schauer, Nicolas ^b   Roessner, Ute ^b   Zamir, Dani ^a   Fernie, Alisdair Robert ^b  

^a HEBREW UNIVERSITY OF JERUSALEM   (Israel)

^b MAX PLANCK INSTITUTE OF MOLECULAR PLANT PHYSIOLOGY   (Germany)

Author keywords

GC MS metabolite profiling; Plant breeding; S. lycopersicum; S. pennelli; Transgenesis; Water stress

Indexed keywords

LYCOPERSICON; LYCOPERSICON ESCULENTUM; LYCOPERSICON PENNELLII; SOLANUM;

EID: 34748897127     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-007-0055-5     Document Type: Article

References (38)

1. Avelange-Macherel M.H., Ly-Vu B., Delaunay J., Richomme P., Leprince O. (2006). NMR metabolite profiling analysis reveals changes in phospholipid metabolism associated with the re-establishment of dessication tolerance upon osmotic stress in germinated radicles of cucumber. Plant Cell Environ. 29:471-482
2. Bartels D., Sunkar R. (2005). Drought and salt tolerance in plants. Crit. Rev. Plant Sci. 24:23-58
3. Bohnert H.J., Gong Q., Li P., Ma S. (2006). Unravelling abiotic stress tolerance mechanisms - getting genomics going. Curr. Opin. Plant Biol. 9:180-188
4. Büssis D., Heineke D. (1998). Acclimation of potato plants to polyethylene glycol-induced water defecit II. Contents and subcellular distribution of organic solvents. J. Exp. Bot. 325: 1361-1370
5. Broadhurst D.I., Kell D.B. (2006). Statistical strategies for avoiding false discoveries in metabolomics and related experiments. Metabolomics 2:179-196
6. Dancer J., David M., Stitt M. (1990). Water stress leads to a change of partitioning in favour of sucrose in heterotrophic cell suspension cultures of Chenopodium rubrum. Plant Cell Environ. 13:957-963
7. Dumville J.C., Fry S.C. (2002). Gentiobiose: A novel oligosaccharin in ripening tomato fruit. Planta 216:484-495
8. Eshed Y., Zamir D. (1994). A genomic library of Lycopersicon pennellii in Lycopersicon esculentum - a tool for fine mapping of genes. Euphytica 79:175-179
9. Eshed Y., Zamir D. (1995). An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL. Genetics 141:1147-1162
10. Fernie A.R., Carrari F., Sweetlove L.J. (2004). Respiratory metabolism: glycolysis, the TCA cycle and mitochondrial electron transport. Curr. Opin. Plant Biol. 7:254-261
11. Fridman E., Liu Y.S., Carmel-Goren L., Gur A., Shoresh M., Pleban T., Eshed Y., Zamir D. (2002). Two tightly linked QTLs modify tomato sugar content via different physiological pathways. Mol. Gen. Gent. 266:821-826
12. Gong Q.Q., Li P.H., Ma S.S., Rupassara S.I., Bohnert H.J. (2005). Salinity stress adaptation competence in the extremophile Thellungiella halophila in comparison with its relative Arabidopsis thaliana. Plant J. 44:826-839
13. Granier C., Aguirrezabal L., Chenu K., Cookson S.J., Dauzat M., Hamard P., Thioux J.-J., Rolland G., Bouchier-Combaud S., Lebaudy A., Muller B., Simonneau T., Tardieu F. (2005). PHENOPSIS, an automated platform for reproducible phenotyping of plant responses to soil water deficit in Arabidopsis thaliana permitted the identification of an accession with low sensitivity to soil water deficit. New Phytologist 169:623-635
14. Gur A., Zamir D. (2004). Unusual natural variation can lift yield barriers. PLOS Biol. 2:1610-1615
15. Hsieh T.H., Lee J.T., Charng Y.Y., Chan M.T. (2002). Tomato plants ectopically expressing Arabidopsis CBF1 show enhanced resistance to water deficit stress. Plant Physiol. 130:618-626
16. Holtan H.E.E., Hake S. (2003). Quantitative trait locus analysis of leaf dissection in tomato using Lycopersicon pennellii segmental introgression lines. Genetics 165:1541-1550
17. Ishizaki K., Larson T.R., Schauer N., Fernie A.R., Graham I.A., Leaver C.J. (2005). The critical role of Arabidopsis electron-transfer flavoprotein: Ubiqinone oxidoreductase during dark-induced starvation. Plant Cell 9:2587-2600
18. Kalifa Y., Perlson E., Gilad A., Konrad Z., Scolnik P.A., Bar-Zvi D. (2004). Over-expression of the water and salt stress-regulated Asr1 gene confers an increased salt tolerance. Plant Cell Environ. 27:1459-1468
19. Kaplan F., Kopka J., Haskell D.W., Zhao W., Schiller K.C., Gatzke N., Sung D.Y., Guy C.L. (2004). Exploring the temperature-stress metabolome of Arabidopsis. Plant Physiol. 136:4159-4168
20. Kopka J., Schauer N., Kruger S., Birkemeyer C., Usadel B., Bergmüller E., Dörmann P., Gibon Y., Stitt M., Willmitzer L., Fernie A.R., Steinhauser, D.(2005). GMDΓSB.DB: The Golm Metabolome Database. Bioinformatics 21:1635-1638
21. Liu Y.S., Gur A., Ronen G., Causse M., Damidaux R., Buret M., Hirschberg J., Zamir D. (2003). There is more to tomato colour than carotenoid genes. Plant Biot. J. 1:195-207
22. Mittler R. (2006). Abiotic stress, the field environment and stress combination. Trends Plant Sci. 11:15-19
23. Rhoades D., Hanson A.D. (1993). Quaternary ammonium and tertiary sulfonium compounds in higher plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 44:357-384
24. Roessner U., Wagner C., Kopka J., Trethewey R.N., Willmitzer L. (2000). Simultaneous analysis of metabolites in potato tuber by gas-chromatography mass-spectrometry. Plant J. 23:131-142
25. Roessner U., Luedemann A., Brust D., Fiehn O., Linke T., Willmitzer L., Fernie A.R. (2001). Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems. Plant Cell 13:11-29
26. Roessner, U., Patterson, J.H., Forbes, M.G., Fincher, G.B., Langridge, P. and Bacic, A. (2006). An investigation of boron toxicity in barley using metabolomics. Plant Physiol. 142, 447-454
27. Roessner-Tunali U., Hegemann B., Lytovchenko A., Carrari F., Bruedigam C., Granot D., Fernie A.R. (2003). Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development. Plant Physiol. 133:84-99
28. Saeed A.I., Sharov V., White J., Li J., Liang W., Bhagabati N., Braisted J., Klapa M., Currier T., Thiagarajan M., Sturn A., Snuffin M., Rezantsev A., Popov D., Ryltsov A., Kostukovich E., Borisovsky I., Liu Z., Vinsavich A., Trush V., Quackenbush J. (2003). TM4: A free, open-source system for microarray data management and analysis. Biotechniques 34:374-378
29. Schauer N., Zamir D., Fernie A.R. (2005a). Metabolic profiling of leaves and fruit of wild species tomato: A survey of the Solanum lycopersicum complex. J. Exp. Bot. 56:297-307
30. Schauer N., Steinhauser D., Strelkov S., Schomburg D., Allison G., Moritz T., Lundgren K., Roessner-Tunali U., Forbes M.G., Willmitzer L., Fernie A.R., Kopka J. (2005b). GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Lett. 579:1332-1337
31. Schauer N., Semel Y., Roessner U., Gur A., Balbo I., Carrari F., Pleban T., Perez-Melis A., Bruedigam C., Kopka J., Willmitzer L., Zamir D., Fernie A.R. (2006). Genetics of metabolite content in fruits of interspecific introgressions of tomato. Nature Biotechnol. 24:447-454
32. Semel Y., Nissenbaum J., Menda N., Zinder M., Krieger U., Issman N., Zamir D. (2006). Overdominant quantitative trait loci for yield and fitness in tomato. Proc. Natl. Acad. Sci. U.S.A. 103:12981-12986
33. Theilhaber J., T. Connolly, S. Roman-Roman, S. Bushnell, A. Jackson, K. Call, T. Garcia R. Baron. 2002. Finding Genes in the C2Cl2 Osteogenic Pathway by KNearest-Neighbor Classification of Expression Data. Genome Res. 12:165-176
34. Urbanczyk-Wochniak E., Fernie A.R. (2005). Metabolic profiling reveals altered nitrogen nutrient regimes have diverse effects on the metabolism of hydroponically-grown tomato (Solanum lycopersicum) plants. J. Exp. Bot. 56:309-321
35. Yamaguchi-Shinozaki K., Shinozaki K. (2006). Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. Annu. Rev. Plant Biol. 57:781-893
36. Yoshiba Y., Kiyosue T., Nakashima K., Yamaguchi-Shinozaki K., Shinozaki K. (1997). Regulation of levels of proline as an osmolyte in plants under water stress. Plant Cell Physiol. 38:1095-1102
37. Zamir D. (2001). Improving plant breeding with exotic genetic libraries. Nat. Rev. Gen. 12:983-989
38. Zhu J.K. (2000). Genetic analysis of plant salt tolerance using Arabidopsis. Plant Physiol. 124:941-948