The critical role of Arabidopsis electron-transfer flavoprotein:ubiquinone oxidoreductase during dark-induced starvation

Plant Cell

Volumn 17, Issue 9, 2005, Pages 2587-2600

  Ishizaki, Kimitsune ^a   Larson, Tony R ^b   Schauer, Nicolas ^c   Fernie, Alisdair R ^c   Graham, Ian A ^b   Leaver, Christopher J ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b UNIVERSITY OF YORK   (United Kingdom)

^c MAX PLANCK INSTITUTE OF MOLECULAR PLANT PHYSIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BIOLOGICAL ORGANS; ELECTRON TRANSITIONS; PLANTS (BOTANY);

CATABOLISM; ELECTRON-TRANSFER FLAVOPROTEIN (ETF); MUTANTS; SUGAR STARVATION;

PROTEINS;

AMINO ACIDS; ELECTRONS; MITOCHONDRIA; PLANTS; PROTEINS;

ARABIDOPSIS; ARABIDOPSIS THALIANA; EMBRYOPHYTA; MAMMALIA;

ACYL COENZYME A; ARABIDOPSIS PROTEIN; BACTERIAL DNA; ELECTRON TRANSFERRING FLAVOPROTEIN; ELECTRON TRANSFERRING FLAVOPROTEIN DEHYDROGENASE; ELECTRON-TRANSFERRING-FLAVOPROTEIN DEHYDROGENASE; HYBRID PROTEIN; IRON SULFUR PROTEIN; ISOPROTEIN; ISOVALERYL COENZYME A; ISOVALERYL-COENZYME A; LEUCINE; OXIDOREDUCTASE; PHYTOL; SUCROSE; T DNA; T-DNA;

ANIMAL; ARABIDOPSIS; ARTICLE; CELL SURVIVAL; DARKNESS; ELECTRON TRANSPORT; ENZYMOLOGY; GENETICS; HUMAN; METABOLISM; MITOCHONDRION; MOLECULAR GENETICS; MUTATION; PHENOTYPE; PHYSIOLOGY;

ACYL COENZYME A; ANIMALS; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CELL SURVIVAL; DARKNESS; DNA, BACTERIAL; ELECTRON TRANSPORT; ELECTRON-TRANSFERRING FLAVOPROTEINS; HUMANS; IRON-SULFUR PROTEINS; LEUCINE; MITOCHONDRIA; MOLECULAR SEQUENCE DATA; MUTATION; OXIDOREDUCTASES ACTING ON CH-NH GROUP DONORS; PHENOTYPE; PHYTOL; PROTEIN ISOFORMS; RECOMBINANT FUSION PROTEINS; SUCROSE;

EID: 33644688603     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.105.035162     Document Type: Article

References (55)

1. Alonso, J.M., et al. (2003). Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301, 653-657.
2. Anderson, M.D., Che, P., Song, J., Nikolau, B.J., and Wurtele, E.S. (1998). 3-Methylcrotonyl-coenzyme A carboxylase is a component of the mitochondrial leucine catabolic pathway in plants. Plant Physiol. 118, 1127-1138.
3. Arabidopsis Genome Initiative (2000). Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815.
4. Aubert, S., Gout, E., Bligny, R., Marty-Mazars, D., Barrieu, F., Alabouvette, J., Marty, F., and Douce, R. (1996). Ultrastructural and biochemical characterization of autophagy in higher plant cells subjected to carbon deprivation: Control by the supply of mitochondria with respiratory substrates. J. Cell Biol. 133, 1251-1263.
5. Bartlett, K., and Eaton, S. (2004). Mitochondrial beta-oxidation. Eur. J. Biochem. 271, 462-469.
6. Beckmann, J.D., and Frerman, F.E. (1985). Electron-transfer flavoprotein-ubiquinone oxidoreductase from pig liver: Purification and molecular, redox, and catalytic properties. Biochemistry 24, 3913-3921.
7. Buchanan-Wollaston, V., Page, T., Harrison, E., Breeze, E., Lim, P.O., Nam, H.G., Lin, J.F., Wu, S.H., Swidzinski, J., Ishizaki, K., and Leaver, C.J. (2005). Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 42, 567-585.
8. Christensen, C.A., Gorsich, S.W., Brown, R.H., Jones, L.G., Brown, J., Shaw, J.M., and Drews, G.N. (2002). Mitochondrial GFA2 is required for synergid cell death in Arabidopsis. Plant Cell 14, 2215-2232.
9. Claros, M.G., and Vincens, P. (1996). Computational method to predict mitochondrially imported proteins and their targeting sequences. Eur. J. Biochem. 241, 779-786.
10. Clough, S.J., and Bent, A.F. (1998). Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
11. Contento, A.L., Kim, S.J., and Bassham, D.C. (2004). Transcriptome profiling of the response of Arabidopsis suspension culture cells to Sue starvation. Plant Physiol. 135, 2330-2347.
12. Daschner, K., Couee, I., and Binder, S. (2001). The mitochondrial isovaleryl-coenzyme a dehydrogenase of Arabidopsis oxidizes intermediates of leucine and valine catabolism. Plant Physiol. 126, 601-612.
13. Eden, A., and Benvenisty, N. (1999). Involvement of branched-chain amino acid aminotransferase (Bcat1/Eca39) in apoptosis. FEBS Lett. 457, 255-261.
14. Frerman, F.E. (1987). Reaction of electron-transfer flavoprotein ubiquinone oxidoreductase with the mitochondrial respiratory chain. Biochim. Biophys. Acta 893, 161-169.
15. Frerman, F.E. (1988). Acyl-CoA dehydrogenases, electron transfer flavoprotein and electron transfer flavoprotein dehydrogenase. Biochem. Soc. Trans. 16, 416-418.
16. Frerman, F.E., and Goodman, S.I. (2001). Defects of electron transfer flavoprotein and electron transfer flavoprotein-ubiquinone oxidoreductase: Glutaric acidemia type II. In The Metabolic and Molecular Bases of Inherited Disease, C.R. Scriver, W.S. Sly, B. Childs, A.L. Beaudet, and D. Valle, eds (New York: McGraw-Hill), pp. 2357-2365.
17. Fujiki, Y., Ito, M., Nishida, I., and Watanabe, A. (2001). Leucine and its keto acid enhance the coordinated expression of genes for branched-chain amino acid catabolism in Arabidopsis under sugar starvation. FEBS Lett. 499, 161-165.
18. Goodman, S.I., Axtell, K.M., Bindoff, L.A., Beard, S.E., Gill, R.E., and Frerman, F.E. (1994). Molecular cloning and expression of a cDNA encoding human electron transfer flavoprotein-ubiquinone oxidore-ductase. Eur. J. Biochem. 219, 277-286.
19. Graham, I.A., and Eastmond, P.J. (2002). Pathways of straight and branched chain fatty acid catabolism in higher plants. Prog. Lipid Res. 41, 156-181.
20. Graham, I.A., Leaver, C.J., and Smith, S.M. (1992). Induction of malate synthase gene expression in senescent and detached organs of cucumber. Plant Cell 4, 349-357.
21. Hanson, M.R., and Bentolila, S. (2004). Interactions of mitochondrial and nuclear genes that affect male gametophyte development. Plant Cell 16(suppl.), S154-S169.
22. Hayashi, H., De Bellis, L., Ciurli, A., Kondo, M., Hayashi, M., and Nishimura, M. (1999). A novel acyl-CoA oxidase that can oxidize short-chain acyl-CoA in plant peroxisomes. J. Biol. Chem. 274, 12715-12721.
23. Heazlewood, J.L., Tonti-Filippini, J.S., Gout, A.M., Day, D.A., Whelan, J., and Millar, A.H. (2004). Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Plant Cell 16, 241-256.
24. Hortensteiner, S. (2004). The loss of green color during chlorophyll degradation-A prerequisite to prevent cell death? Planta 219, 191-194.
25. Ikeda, Y., Dabrowski, C., and Tanaka, K. (1983). Separation and properties of five distinct acyl-CoA dehydrogenases from rat liver mitochondria. Identification of a new 2-methyl branched chain acyl-CoA dehydrogenase. J. Biol. Chem. 258, 1066-1076.
26. Ikeda, Y., and Tanaka, K. (1983). Purification and characterization of isovaleryl coenzyme A dehydrogenase from rat liver mitochondria. J. Biol. Chem. 258, 1077-1085.
27. Karimi, M., Inzé, D., and Depicker, A. (2002). GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci. 7, 193-195.
28. Kawaguchi, A., Yoshimura, T., and Okuda, S. (1981). A new method for the preparation of acyl-CoA thioesters. J. Biochem. (Tokyo) 89, 337-339.
29. Lange, P.P., Eastmond, P.J., Madagan, K., and Graham, I.A. (2004). An Arabidopsis mutant disrupted in valine catabolism is also compromised in peroxisomal fatty acid beta-oxidation. FEBS Lett. 571, 147-153.
30. Larson, T.R., Edgell, T., Byrne, J., Dehesh, K., and Graham, I.A. (2002). Acyl CoA profiles of transgenic plants that accumulate medium-chain fatty acids indicate inefficient storage lipid synthesis in developing oilseeds. Plant J. 32, 519-527.
31. Larson, T.R., and Graham, I.A. (2001). Technical advance: A novel technique for the sensitive quantification of acyl CoA esters from plant tissues. Plant J. 25, 115-125.
32. Lin, J.F., and Wu, S.H. (2004). Molecular events in senescing Arabidopsis leaves. Plant J. 39, 612-628.
33. Matile, P., Hortensteiner, S., and Thomas, H. (1999). Chlorophyll degradation. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50, 67-95.
34. Nakai, K., and Horton, P. (1999). PSORT: A program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem. Sci. 24, 34-36.
35. Ogier de Baulny, H., and Saudubray, J.M. (2002). Branched-chain organic acidurias. Semin. Neonatol. 7, 65-74.
36. Oh, S.A., Lee, S.Y., Chung, I.K., Lee, C.H., and Nam, H.G. (1996). A senescence-associated gene of Arabidopsis thaliana is distinctively regulated during natural and artificially induced leaf senescence. Plant Mol. Biol. 30, 739-754.
37. Parker, A., and Engel, P.C. (2000). Preliminary evidence for the existence of specific functional assemblies between enzymes of the beta-oxidation pathway and the respiratory chain. Biochem. J. 345, 429-435.
38. Porra, R.J., Thompson, W.A., and Kriedemann, P.E. (1989). Determination of accurate extinction coefficients and simultaneous equations for assaying chlorophylls a and b extracted with four different solvents: Verification of the concentration of chlorophyll standards by atomic absorption spectroscopy. Biochim. Biophys. Acta 975, 384-394.
39. Roessner, U., Luedemann, A., Brust, D., Fiehn, O., Linke, T., Willmitzer, L., and Fernie, A. (2001). Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems. Plant Cell 13, 11-29.
40. Roessner-Tunali, U., Hegemann, B., Lytovchenko, A., Carrari, F., Bruedigam, C., Granot, D., and Fernie, A.R. (2003). Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development. Plant Physiol. 133, 84-99.
41. Rontani, J.F., and Aubert, C. (2005). Characterization of isomeric allylic diols resulting from chlorophyll phytyl side-chain photo- and autoxidation by electron ionization gas chromatography/mass spectrometry. Rapid Commun. Mass Spectrom. 19, 637-646.
42. Rontani, J.F., Cuny, P., and Grossi, V. (1996). Photodegradation of chlorophyll phytyl chain in senescent leaves of higher plants. Phytochemistry 42, 347-351.
43. Ruzicka, F.J., and Beinert, H. (1977). A new iron-sulfur flavoprotein of the respiratory chain. A component of the fatty acid beta oxidation pathway. J. Biol. Chem. 252, 8440-8445.
44. Schuster, J., and Binder, S. (2005). The mitochondrial branched-chain aminotransferase (AtBCAT-1) is capable to initiate degradation of leucine, isoleucine and valine in almost all tissues in Arabidopsis thaliana. Plant Mol. Biol. 57, 241-254.
45. Sessions, A., et al. (2002). A high-throughput Arabidopsis reverse genetics system. Plant Cell 14, 2985-2994.
46. Skinner, D.J., Baker, S.C., Meister, R.J., Broadhvest, J., Schneitz, K., and Gasser, C.S. (2001). The Arabidopsis HUELLENLOS gene, which is essential for normal ovule development, encodes a mitochondrial ribosomal protein. Plant Cell 13, 2719-2730.
47. Sundaresan, V., Springer, P., Volpe, T., Haward, S., Jones, J.D., Dean, C., Ma, H., and Martienssen, R. (1995). Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes Dev. 9, 1797-1810.
48. Taylor, D.C., Weber, N., Hogge, L.R., and Underbill, E.W. (1990). A simple enzymatic method for the preparation of radiolabeled erucoyl-CoA and other long-chain fatty acyl-CoAs and their characterization by mass spectrometry. Anal. Biochem. 184, 311-316.
49. Taylor, N.L., Heazlewood, J.L., Day, D.A., and Millar, A.H. (2004). Lipoic acid-dependent oxidative catabolism of alpha-keto acids in mitochondria provides evidence for branched-chain amino acid catabolism in Arabidopsis. Plant Physiol. 134, 838-848.
50. Thimm, O., Blasing, O., Gibon, Y., Nagel, A., Meyer, S., Kruger, P., Selbig, J., Muller, L.A., Rhee, S.Y., and Stitt, M. (2004). MAPMAN: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J. 37, 914-939.
51. Tonon, T., Qing, R., Harvey, D., Li, Y., Larson, T.R., and Graham, I.A. (2005). Identification of a long-chain polyunsaturated fatty acid acyl-coenzyme A synthetase from the diatom Thalassiosira pseudonana. Plant Physiol. 138, 402-408.
52. Tsuchiya, T., Ohta, H., Okawa, K., Iwamatsu, A., Shimada, H., Masuda, T., and Takamiya, K. (1999). Cloning of chlorophyllase, the key enzyme in chlorophyll degradation: Finding of a lipase motif and the induction by methyl jasmonate. Proc. Natl. Acad. Sci. USA 96, 15362-15367.
53. Wanders, R.J., Jansen, G.A., and Lloyd, M.D. (2003). Phytanic acid alpha-oxidation, new insights into an old problem: A review. Biochim. Biophys. Acta 1631, 119-135.
54. Wierzbicki, A.S., Lloyd, M.D., Schofield, C.J., Feher, M.D., and Gibberd, F.B. (2002). Refsum's disease: A peroxisomal disorder affecting phytanic acid alpha-oxidation. J. Neurochem. 80, 727-735.
55. Zimmermann, P., Hirsch-Hoffmann, M., Hennig, L., and Gruissem, W. (2004). GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol. 136, 2621-2632.