-
1
-
-
0037154273
-
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome
-
117378 11805330 10.1073/pnas.231608898
-
Berman BP Nibu Y Pfeiffer BD Tomancak P Celniker SE Levine M Rubin GM Eisen MB Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome. Proc Natl Acad Sci USA 2002 99 757-762 117378 11805330 10.1073/pnas.231608898
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 757-762
-
-
Berman, B.P.1
Nibu, Y.2
Pfeiffer, B.D.3
Tomancak, P.4
Celniker, S.E.5
Levine, M.6
Rubin, G.M.7
Eisen, M.B.8
-
2
-
-
0034819935
-
A predictive model for regulatory sequences directing liver-specific transcription
-
311083 11544200 10.1101/gr.180601
-
Krivan W Wasserman WW A predictive model for regulatory sequences directing liver-specific transcription. Genome Res 2001 11 1559-1566 311083 11544200 10.1101/gr.180601
-
(2001)
Genome Res
, vol.11
, pp. 1559-1566
-
-
Krivan, W.1
Wasserman, W.W.2
-
3
-
-
0032413411
-
Predicting gene regulatory elements in silico on a genomic scale
-
310790 9847082
-
Brazma A Jonassen I Vilo J Ukkonen E Predicting gene regulatory elements in silico on a genomic scale. Genome Res 1998 8 1202-1215 310790 9847082
-
(1998)
Genome Res
, vol.8
, pp. 1202-1215
-
-
Brazma, A.1
Jonassen, I.2
Vilo, J.3
Ukkonen, E.4
-
4
-
-
0032483307
-
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
-
10.1006/jmbi.1998.1947 9719638
-
van Helden J Andre B Collado-Vides J Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J Mol Biol 1998 281 827-842 10.1006/ jmbi.1998.1947 9719638
-
(1998)
J Mol Biol
, vol.281
, pp. 827-842
-
-
van Helden, J.1
Andre, B.2
Collado-Vides, J.3
-
6
-
-
0034785443
-
Identifying regulatory networks by combinatorial analysis of promoter elements
-
10.1038/ng724 11547334
-
Pilpel Y Sudarsanam P Church GM Identifying regulatory networks by combinatorial analysis of promoter elements. Nat Genet 2001 29 153-159 10.1038/ng724 11547334
-
(2001)
Nat Genet
, vol.29
, pp. 153-159
-
-
Pilpel, Y.1
Sudarsanam, P.2
Church, G.M.3
-
7
-
-
1942453302
-
Predicting gene expression from sequence
-
10.1016/S0092-8674(04)00304-6 15084257
-
Beer MA Tavazoie S Predicting gene expression from sequence. Cell 2004 117 185-198 10.1016/S0092-8674(04)00304-6 15084257
-
(2004)
Cell
, vol.117
, pp. 185-198
-
-
Beer, M.A.1
Tavazoie, S.2
-
8
-
-
0037453009
-
Integrating regulatory motif discovery and genome-wide expression analysis
-
152294 12626739 10.1073/pnas.0630591100
-
Conlon EM Liu XS Lieb JD Liu JS Integrating regulatory motif discovery and genome-wide expression analysis. Proc Natl Acad Sci USA 2003 100 3339-3344 152294 12626739 10.1073/pnas.0630591100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 3339-3344
-
-
Conlon, E.M.1
Liu, X.S.2
Lieb, J.D.3
Liu, J.S.4
-
9
-
-
0037941585
-
Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data
-
12740579
-
Segal E Shapira M Regev A Pe'er D Botstein D Koller D Friedman N Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data. Nat Genet 2003 34 166-176 12740579
-
(2003)
Nat Genet
, vol.34
, pp. 166-176
-
-
Segal, E.1
Shapira, M.2
Regev, A.3
Pe'er, D.4
Botstein, D.5
Koller, D.6
Friedman, N.7
-
10
-
-
0023927904
-
Identification of structural motifs from protein coordinate data: Secondary structure and first-level supersecondary structure
-
10.1002/prot.340030202 3399495
-
Richards FM Kundrot CE Identification of structural motifs from protein coordinate data: Secondary structure and first-level supersecondary structure. Proteins 1988 3 71-84 10.1002/prot.340030202 3399495
-
(1988)
Proteins
, vol.3
, pp. 71-84
-
-
Richards, F.M.1
Kundrot, C.E.2
-
12
-
-
0036122720
-
Extraction of functional binding sites from unique regulatory regions: The Drosophila early developmental enhancers
-
155290 11875036 10.1101/gr.212502. Article published online before print in February 2002
-
Papatsenko DA Makeev VJ Lifanov AP Regnier M Nazina AG Desplan C Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers. Genome Res 2002 12 470-481 155290 11875036 10.1101/gr.212502. Article published online before print in February 2002
-
(2002)
Genome Res
, vol.12
, pp. 470-481
-
-
Papatsenko, D.A.1
Makeev, V.J.2
Lifanov, A.P.3
Regnier, M.4
Nazina, A.G.5
Desplan, C.6
-
14
-
-
33846653309
-
Learning probabilistic models of cis-regulatory modules that represent logical and spatial aspects
-
10.1093/bioinformatics/btl319 17237085
-
Noto K Craven M Learning probabilistic models of cis-regulatory modules that represent logical and spatial aspects. Bioinformatics 2007 23 e156-162 10.1093/bioinformatics/btl319 17237085
-
(2007)
Bioinformatics
, vol.23
-
-
Noto, K.1
Craven, M.2
-
15
-
-
2342647392
-
Statistical analysis of overrepresented words in human promoter sequences
-
373387 14963262 10.1093/nar/gkh246
-
Marino-Ramirez L Spouge JL Kanga GC Landsman D Statistical analysis of overrepresented words in human promoter sequences. Nucleic Acids Res 2004 32 949-958 373387 14963262 10.1093/nar/gkh246
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 949-958
-
-
Marino-Ramirez, L.1
Spouge, J.L.2
Kanga, G.C.3
Landsman, D.4
-
16
-
-
0038664127
-
Identification and functional analysis of human transcriptional promoters
-
420378 12566409 10.1101/gr.794803
-
Trinklein ND Aldred SJ Saldanha AJ Myers RM Identification and functional analysis of human transcriptional promoters. Genome Res 2003 13 308-312 420378 12566409 10.1101/gr.794803
-
(2003)
Genome Res
, vol.13
, pp. 308-312
-
-
Trinklein, N.D.1
Aldred, S.J.2
Saldanha, A.J.3
Myers, R.M.4
-
17
-
-
0242495787
-
Identification of target genes of the p16INK4A-pRB-E2F pathway
-
10.1074/jbc.M304930200 12923195
-
Vernell R Helin K Muller H Identification of target genes of the p16INK4A-pRB-E2F pathway. J Biol Chem 2003 278 46124-46137 10.1074/ jbc.M304930200 12923195
-
(2003)
J Biol Chem
, vol.278
, pp. 46124-46137
-
-
Vernell, R.1
Helin, K.2
Muller, H.3
-
18
-
-
0035953394
-
DNA microarrays identification of primary and secondary target genes regulated by p53
-
10.1038/sj.onc.1204319 11402317
-
Kannan K Amariglio N Rechavi G Jakob-Hirsch J Kela I Kaminski N Getz G Domany E Givol D DNA microarrays identification of primary and secondary target genes regulated by p53. Oncogene 2001 20 2225-2234 10.1038/ sj.onc.1204319 11402317
-
(2001)
Oncogene
, vol.20
, pp. 2225-2234
-
-
Kannan, K.1
Amariglio, N.2
Rechavi, G.3
Jakob-Hirsch, J.4
Kela, I.5
Kaminski, N.6
Getz, G.7
Domany, E.8
Givol, D.9
-
19
-
-
0034724389
-
Expression analysis with oligonucleotide microarrays reveals that MYC regulates genes involved in growth, cell cycle, signaling, and adhesion
-
16226 10737792 10.1073/pnas.97.7.3260
-
Coller HA Grandori C Tamayo P Colbert T Lander ES Eisenman RN Golub TR Expression analysis with oligonucleotide microarrays reveals that MYC regulates genes involved in growth, cell cycle, signaling, and adhesion. Proc Natl Acad Sci USA 2000 97 3260-3265 16226 10737792 10.1073/ pnas.97.7.3260
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 3260-3265
-
-
Coller, H.A.1
Grandori, C.2
Tamayo, P.3
Colbert, T.4
Lander, E.S.5
Eisenman, R.N.6
Golub, T.R.7
-
20
-
-
10744233491
-
Exploratory and confirmatory gene expression profiling of mac1Delta
-
10.1074/jbc.M212308200 14534306
-
De Freitas J Kim J Poynton H Su T Wintz H Fox T Holman P Loguinov A Keles S van der Laan M Exploratory and confirmatory gene expression profiling of mac1Delta. J Biol Chem 2004 279 4450-4458 10.1074/ jbc.M212308200 14534306
-
(2004)
J Biol Chem
, vol.279
, pp. 4450-4458
-
-
De Freitas, J.1
Kim, J.2
Poynton, H.3
Su, T.4
Wintz, H.5
Fox, T.6
Holman, P.7
Loguinov, A.8
Keles, S.9
van der Laan, M.10
-
21
-
-
33747835613
-
Composite Module Analyst: Identification of transcription factor binding site combinations using genetic algorithm
-
1538785 16845066 10.1093/nar/gkl342
-
Waleev T Shtokalo D Konovalova T Voss N Cheremushkin E Stegmaier P Kel-Margoulis O Wingender E Kel A Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm. Nucleic Acids Res 2006 34 W541-545 1538785 16845066 10.1093/nar/gkl342
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Waleev, T.1
Shtokalo, D.2
Konovalova, T.3
Voss, N.4
Cheremushkin, E.5
Stegmaier, P.6
Kel-Margoulis, O.7
Wingender, E.8
Kel, A.9
-
22
-
-
3242879521
-
CREME: Cis-Regulatory Module Explorer for the human genome
-
441523 15215390 10.1093/nar/gkh385
-
Sharan R Ben-Hur A Loots GG Ovcharenko I CREME: Cis-Regulatory Module Explorer for the human genome. Nucleic Acids Res 2004 32 W253-256 441523 15215390 10.1093/nar/gkh385
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Sharan, R.1
Ben-Hur, A.2
Loots, G.G.3
Ovcharenko, I.4
-
23
-
-
23144437890
-
POCO: Discovery of regulatory patterns from promoters of oppositely expressed gene sets
-
1160228 15980504 10.1093/nar/gki467
-
Kankainen M Holm L POCO: Discovery of regulatory patterns from promoters of oppositely expressed gene sets. Nucleic Acids Res 2005 33 W427-431 1160228 15980504 10.1093/nar/gki467
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Kankainen, M.1
Holm, L.2
-
24
-
-
2542584654
-
Detection of functional DNA motifs via statistical overrepresentation
-
390287 14988425 10.1093/nar/gkh299
-
Frith MC Fu Y Yu L Chen JF Hansen U Weng Z Detection of functional DNA motifs via statistical overrepresentation. Nucleic Acids Res 2004 32 1372-1381 390287 14988425 10.1093/nar/gkh299
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1372-1381
-
-
Frith, M.C.1
Fu, Y.2
Yu, L.3
Chen, J.F.4
Hansen, U.5
Weng, Z.6
-
25
-
-
0024462111
-
Cooperative binding of two E2F molecules to an Ela-responsive promoter is triggered by the adenovirus Ela, but not by a cellular Ela-like activity
-
401478 2531078
-
Jansen-Durr P Boeuf H Kedinger C Cooperative binding of two E2F molecules to an Ela-responsive promoter is triggered by the adenovirus Ela, but not by a cellular Ela-like activity. EMBO J 1989 8 3365-3370 401478 2531078
-
(1989)
EMBO J
, vol.8
, pp. 3365-3370
-
-
Jansen-Durr, P.1
Boeuf, H.2
Kedinger, C.3
-
26
-
-
0024418537
-
E2F from adenovirus-infected cells binds cooperatively to DNA containing two properly oriented and spaced recognition sites
-
362534 2531279
-
Hardy S Shenk T E2F from adenovirus-infected cells binds cooperatively to DNA containing two properly oriented and spaced recognition sites. Mol Cell Biol 1989 9 4495-4506 362534 2531279
-
(1989)
Mol Cell Biol
, vol.9
, pp. 4495-4506
-
-
Hardy, S.1
Shenk, T.2
-
27
-
-
0029054133
-
Differential roles of two tandem E2F sites in repression of the human p107 promoter by retinoblastoma and p107 proteins
-
230592 7791762
-
Zhu L Xie E Chang LS Differential roles of two tandem E2F sites in repression of the human p107 promoter by retinoblastoma and p107 proteins. Mol Cell Biol 1995 15 3552-3562 230592 7791762
-
(1995)
Mol Cell Biol
, vol.15
, pp. 3552-3562
-
-
Zhu, L.1
Xie, E.2
Chang, L.S.3
-
28
-
-
0036074443
-
Genetic and functional analysis of the von Hippel-Lindau (VHL) tumour suppressor gene promoter
-
10.1136/jmg.39.7.463 12114475
-
Zatyka M Morrissey C Kuzmin I Lerman MI Latif F Richards FM Maher ER Genetic and functional analysis of the von Hippel-Lindau (VHL) tumour suppressor gene promoter. J Med Genet 2002 39 463-472 10.1136/ jmg.39.7.463 12114475
-
(2002)
J Med Genet
, vol.39
, pp. 463-472
-
-
Zatyka, M.1
Morrissey, C.2
Kuzmin, I.3
Lerman, M.I.4
Latif, F.5
Richards, F.M.6
Maher, E.R.7
-
29
-
-
0032772371
-
Methylation-mediated transcriptional silencing in euchromatin by methyl-CpG binding protein MBD1 isoforms
-
84611 10454587
-
Fujita N Takebayashi S Okumura K Kudo S Chiba T Saya H Nakao M Methylation-mediated transcriptional silencing in euchromatin by methyl-CpG binding protein MBD1 isoforms. Mol Cell Biol 1999 19 6415-6426 84611 10454587
-
(1999)
Mol Cell Biol
, vol.19
, pp. 6415-6426
-
-
Fujita, N.1
Takebayashi, S.2
Okumura, K.3
Kudo, S.4
Chiba, T.5
Saya, H.6
Nakao, M.7
-
30
-
-
0033550316
-
Transcription factors of the Sp1 family: Interaction with E2F and regulation of the murine thymidine kinase promoter
-
10.1006/jmbi.1999.3213 10547281
-
Rotheneder H Geymayer S Haidweger E Transcription factors of the Sp1 family: Interaction with E2F and regulation of the murine thymidine kinase promoter. J Mol Biol 1999 293 1005-1015 10.1006/jmbi.1999.3213 10547281
-
(1999)
J Mol Biol
, vol.293
, pp. 1005-1015
-
-
Rotheneder, H.1
Geymayer, S.2
Haidweger, E.3
-
31
-
-
0035144362
-
Cooperation of E2F-p130 and Sp1-pRb complexes in repression of the Chinese hamster dhfr gene
-
99566 11158299 10.1128/MCB.21.4.1121-1131.2001
-
Chang YC Illenye S Heintz NH Cooperation of E2F-p130 and Sp1-pRb complexes in repression of the Chinese hamster dhfr gene. Mol Cell Biol 2001 21 1121-1131 99566 11158299 10.1128/MCB.21.4.1121-1131.2001
-
(2001)
Mol Cell Biol
, vol.21
, pp. 1121-1131
-
-
Chang, Y.C.1
Illenye, S.2
Heintz, N.H.3
-
32
-
-
0035394395
-
E2F mediates induction of the Sp1-controlled promoter of the human DNA polymerase epsilon B-subunit gene POLE2
-
55767 11433027 10.1093/nar/29.13.2810
-
Huang D Jokela M Tuusa J Skog S Poikonen K Syvaoja JE E2F mediates induction of the Sp1-controlled promoter of the human DNA polymerase epsilon B-subunit gene POLE2. Nucleic Acids Res 2001 29 2810-2821 55767 11433027 10.1093/nar/29.13.2810
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2810-2821
-
-
Huang, D.1
Jokela, M.2
Tuusa, J.3
Skog, S.4
Poikonen, K.5
Syvaoja, J.E.6
-
33
-
-
0035131215
-
E2F regulates growth-dependent transcription of genes encoding both catalytic and regulatory subunits of mouse primase
-
10.1046/j.1365-2443.2001.00395.x 11168597
-
Nishikawa N Izumi M Yokoi M Miyazawa H Hanaoka F E2F regulates growth-dependent transcription of genes encoding both catalytic and regulatory subunits of mouse primase. Genes Cells 2001 6 57-70 10.1046/ j.1365-2443.2001.00395.x 11168597
-
(2001)
Genes Cells
, vol.6
, pp. 57-70
-
-
Nishikawa, N.1
Izumi, M.2
Yokoi, M.3
Miyazawa, H.4
Hanaoka, F.5
-
34
-
-
0036297530
-
Transcriptional regulation of the human tumor suppressor p14(ARF) by E2F1, E2F2, E2F3, and Sp1-like factors
-
10.1006/bbrc.2002.6591 11883935
-
Parisi T Pollice A Di Cristofano A Calabro V La Mantia G Transcriptional regulation of the human tumor suppressor p14(ARF) by E2F1, E2F2, E2F3, and Sp1-like factors. Biochem Biophys Res Commun 2002 291 1138-1145 10.1006/bbrc.2002.6591 11883935
-
(2002)
Biochem Biophys Res Commun
, vol.291
, pp. 1138-1145
-
-
Parisi, T.1
Pollice, A.2
Di Cristofano, A.3
Calabro, V.4
La Mantia, G.5
-
35
-
-
0037193665
-
Regulation of transcription of the murine gamma-glutamyl hydrolase gene Delineation of core promoter A and the role of LYF-1, E2F and ETS-1 in determining tumor-specific expression
-
10.1016/S0378-1119(02)00593-0 12095690
-
Masumoto N Chen J Sirotnak FM Regulation of transcription of the murine gamma-glutamyl hydrolase gene. Delineation of core promoter A and the role of LYF-1, E2F and ETS-1 in determining tumor-specific expression. Gene 2002 291 169-176 10.1016/S0378-1119(02)00593-0 12095690
-
(2002)
Gene
, vol.291
, pp. 169-176
-
-
Masumoto, N.1
Chen, J.2
Sirotnak, F.M.3
-
36
-
-
0141924450
-
Cloning and functional analyses of the mouse tapasin promoter
-
10.1007/s00251-003-0597-2 12942211
-
Herrmann F Trowsdale J Huber C Seliger B Cloning and functional analyses of the mouse tapasin promoter. Immunogenetics 2003 55 379-388 10.1007/ s00251-003-0597-2 12942211
-
(2003)
Immunogenetics
, vol.55
, pp. 379-388
-
-
Herrmann, F.1
Trowsdale, J.2
Huber, C.3
Seliger, B.4
-
37
-
-
0030688065
-
Subunit composition determines E2F DNA-binding site specificity
-
232556 9372931
-
Tao Y Kassatly RF Cress WD Horowitz JM Subunit composition determines E2F DNA-binding site specificity. Mol Cell Biol 1997 17 6994-7007 232556 9372931
-
(1997)
Mol Cell Biol
, vol.17
, pp. 6994-7007
-
-
Tao, Y.1
Kassatly, R.F.2
Cress, W.D.3
Horowitz, J.M.4
-
39
-
-
0038064220
-
Aging reduces proliferative capacities of liver by switching pathways of C/EBPalpha growth arrest
-
10.1016/S0092-8674(03)00318-0 12757710
-
Iakova P Awad SS Timchenko NA Aging reduces proliferative capacities of liver by switching pathways of C/EBPalpha growth arrest. Cell 2003 113 495-506 10.1016/S0092-8674(03)00318-0 12757710
-
(2003)
Cell
, vol.113
, pp. 495-506
-
-
Iakova, P.1
Awad, S.S.2
Timchenko, N.A.3
-
40
-
-
2942685765
-
WNT2 and human gastrointestinal cancer (review)
-
14533014
-
Katoh M WNT2 and human gastrointestinal cancer (review). Int J Mol Med 2003 12 811-816 14533014
-
(2003)
Int J Mol Med
, vol.12
, pp. 811-816
-
-
Katoh, M.1
-
41
-
-
0345368061
-
p53 suppresses cytokine induced, Stat5 mediated activation of transcription
-
10.1016/S0303-7207(98)00140-3 9806359
-
Fritsche M Mundt M Merkle C Jahne R Groner B p53 suppresses cytokine induced, Stat5 mediated activation of transcription. Mol Cell Endocrinol 1998 143 143-154 10.1016/S0303-7207(98)00140-3 9806359
-
(1998)
Mol Cell Endocrinol
, vol.143
, pp. 143-154
-
-
Fritsche, M.1
Mundt, M.2
Merkle, C.3
Jahne, R.4
Groner, B.5
-
42
-
-
14244250067
-
Transcriptional repression of protein kinase Calpha via Sp1 by wild type p53 is involved in inhibition of multidrug resistance 1 P-glycoprotein phosphorylation
-
10.1074/jbc.M407450200 15563462
-
Zhan M Yu D Liu J Glazer RI Hannay J Pollock RE Transcriptional repression of protein kinase Calpha via Sp1 by wild type p53 is involved in inhibition of multidrug resistance 1 P-glycoprotein phosphorylation. J Biol Chem 2005 280 4825-4833 10.1074/jbc.M407450200 15563462
-
(2005)
J Biol Chem
, vol.280
, pp. 4825-4833
-
-
Zhan, M.1
Yu, D.2
Liu, J.3
Glazer, R.I.4
Hannay, J.5
Pollock, R.E.6
-
43
-
-
13244260735
-
KAI1 promoter activity is dependent on p53, junB and AP2: Evidence for a possible mechanism underlying loss of KAI1 expression in cancer cells
-
10.1038/sj.onc.1208216 15580298
-
Marreiros A Dudgeon K Dao V Grimm MO Czolij R Crossley M Jackson P KAI1 promoter activity is dependent on p53, junB and AP2: Evidence for a possible mechanism underlying loss of KAI1 expression in cancer cells. Oncogene 2005 24 637-649 10.1038/sj.onc.1208216 15580298
-
(2005)
Oncogene
, vol.24
, pp. 637-649
-
-
Marreiros, A.1
Dudgeon, K.2
Dao, V.3
Grimm, M.O.4
Czolij, R.5
Crossley, M.6
Jackson, P.7
-
44
-
-
4444222932
-
pRb, Myc and p53 are critically involved in SV40 large T antigen repression of PDGF beta-receptor transcription
-
10.1242/jcs.01228 15265983
-
Uramoto H Hackzell A Wetterskog D Ballagi A Izumi H Funa K pRb, Myc and p53 are critically involved in SV40 large T antigen repression of PDGF beta-receptor transcription. J Cell Sci 2004 117 3855-3865 10.1242/ jcs.01228 15265983
-
(2004)
J Cell Sci
, vol.117
, pp. 3855-3865
-
-
Uramoto, H.1
Hackzell, A.2
Wetterskog, D.3
Ballagi, A.4
Izumi, H.5
Funa, K.6
-
45
-
-
0031771497
-
The human ARF cell cycle regulatory gene promoter is a CpG island which can be silenced by DNA methylation and down-regulated by wild-type p53
-
109232 9774662
-
Robertson KD Jones PA The human ARF cell cycle regulatory gene promoter is a CpG island which can be silenced by DNA methylation and down-regulated by wild-type p53. Mol Cell Biol 1998 18 6457-6473 109232 9774662
-
(1998)
Mol Cell Biol
, vol.18
, pp. 6457-6473
-
-
Robertson, K.D.1
Jones, P.A.2
-
47
-
-
4444342240
-
Evidence for a cancer-specific switch at the CDK4 promoter with loss of control by both USF and c-Myc
-
10.1038/sj.onc.1207806 15208653
-
Pawar SA Szentirmay MN Hermeking H Sawadogo M Evidence for a cancer-specific switch at the CDK4 promoter with loss of control by both USF and c-Myc. Oncogene 2004 23 6125-6135 10.1038/sj.onc.1207806 15208653
-
(2004)
Oncogene
, vol.23
, pp. 6125-6135
-
-
Pawar, S.A.1
Szentirmay, M.N.2
Hermeking, H.3
Sawadogo, M.4
-
48
-
-
0033375265
-
Differential regulation of E2F transcription factors by p53 tumor suppressor protein
-
10.1089/104454999314773 10619603
-
Vaishnav YN Pant V Differential regulation of E2F transcription factors by p53 tumor suppressor protein. DNA Cell Biol 1999 18 911-922 10.1089/ 104454999314773 10619603
-
(1999)
DNA Cell Biol
, vol.18
, pp. 911-922
-
-
Vaishnav, Y.N.1
Pant, V.2
-
50
-
-
0035162594
-
RefSeq and LocusLink: NCBI gene-centered resources
-
29787 11125071 10.1093/nar/29.1.137
-
Pruitt KD Maglott DR RefSeq and LocusLink: NCBI gene-centered resources. Nucleic Acids Res 2001 29 137-140 29787 11125071 10.1093/nar/29.1.137
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 137-140
-
-
Pruitt, K.D.1
Maglott, D.R.2
-
51
-
-
0347756647
-
DBTSS, DataBase of Transcriptional Start Sites: Progress report 2004
-
308810 14681363 10.1093/nar/gkh076
-
Suzuki Y Yamashita R Sugano S Nakai K DBTSS, DataBase of Transcriptional Start Sites: Progress report 2004. Nucleic Acids Res 2004 32 D78-81 308810 14681363 10.1093/nar/gkh076
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Suzuki, Y.1
Yamashita, R.2
Sugano, S.3
Nakai, K.4
-
52
-
-
0028505429
-
TRANSFAC retrieval program: A network model database of eukaryotic transcription regulating sequences and proteins
-
8790464
-
Knuppel R Dietze P Lehnberg W Frech K Wingender E TRANSFAC retrieval program: A network model database of eukaryotic transcription regulating sequences and proteins. J Comput Biol 1994 1 191-198 8790464
-
(1994)
J Comput Biol
, vol.1
, pp. 191-198
-
-
Knuppel, R.1
Dietze, P.2
Lehnberg, W.3
Frech, K.4
Wingender, E.5
-
53
-
-
0034284437
-
Repbase update: A database and an electronic journal of repetitive elements
-
10.1016/S0168-9525(00)02093-X 10973072
-
Jurka J Repbase update: A database and an electronic journal of repetitive elements. Trends Genet 2000 16 418-420 10.1016/ S0168-9525(00)02093-X 10973072
-
(2000)
Trends Genet
, vol.16
, pp. 418-420
-
-
Jurka, J.1
-
54
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
10.1159/000084979 16093699
-
Jurka J Kapitonov VV Pavlicek A Klonowski P Kohany O Walichiewicz J Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res 2005 110 462-467 10.1159/000084979 16093699
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
56
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y Hochberg Y Controlling the false discovery rate: A practical and powerful approach to multiple testing. J Roy Stat Soc Ser B 1995 57 289-300
-
(1995)
J Roy Stat Soc Ser B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
57
-
-
0042424602
-
Statistical significance for genomewide studies
-
170937 12883005 10.1073/pnas.1530509100
-
Storey JD Tibshirani R Statistical significance for genomewide studies. Proc Natl Acad Sci USA 2003 100 9440-9445 170937 12883005 10.1073/ pnas.1530509100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
60
-
-
33644875782
-
A new generation of JASPAR, the open-access repository for transcription factor binding site profiles
-
1347477 16381983 10.1093/nar/gkj115
-
Vlieghe D Sandelin A De Bleser PJ Vleminckx K Wasserman WW van Roy F Lenhard B A new generation of JASPAR, the open-access repository for transcription factor binding site profiles. Nucleic Acids Res 2006 34 D95-97 1347477 16381983 10.1093/nar/gkj115
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Vlieghe, D.1
Sandelin, A.2
De Bleser, P.J.3
Vleminckx, K.4
Wasserman, W.W.5
van Roy, F.6
Lenhard, B.7
-
62
-
-
0030060469
-
ATF3 gene. Genomic organization, promoter, and regulation
-
10.1074/jbc.271.3.1695 8576171
-
Liang G Wolfgang CD Chen BP Chen TH Hai T ATF3 gene. Genomic organization, promoter, and regulation. J Biol Chem 1996 271 1695-1701 10.1074/jbc.271.3.1695 8576171
-
(1996)
J Biol Chem
, vol.271
, pp. 1695-1701
-
-
Liang, G.1
Wolfgang, C.D.2
Chen, B.P.3
Chen, T.H.4
Hai, T.5
-
63
-
-
0036120725
-
Control of cell cycle exit and entry by protein kinase B-regulated forkhead transcription factors
-
133681 11884591 10.1128/MCB.22.7.2025-2036.2002
-
Kops GJ Medema RH Glassford J Essers MA Dijkers PF Coffer PJ Lam EW Burgering BM Control of cell cycle exit and entry by protein kinase B-regulated forkhead transcription factors. Mol Cell Biol 2002 22 2025-2036 133681 11884591 10.1128/MCB.22.7.2025-2036.2002
-
(2002)
Mol Cell Biol
, vol.22
, pp. 2025-2036
-
-
Kops, G.J.1
Medema, R.H.2
Glassford, J.3
Essers, M.A.4
Dijkers, P.F.5
Coffer, P.J.6
Lam, E.W.7
Burgering, B.M.8
-
64
-
-
0033588026
-
The adenovirus oncoprotein E1a stimulates binding of transcription factor ETF to transcriptionally activate the p53 gene
-
10.1074/jbc.274.34.23777 10446138
-
Hale TK Braithwaite AW The adenovirus oncoprotein E1a stimulates binding of transcription factor ETF to transcriptionally activate the p53 gene. J Biol Chem 1999 274 23777-23786 10.1074/jbc.274.34.23777 10446138
-
(1999)
J Biol Chem
, vol.274
, pp. 23777-23786
-
-
Hale, T.K.1
Braithwaite, A.W.2
-
65
-
-
1542314236
-
Transforming growth factor beta-mediated transcriptional repression of c-myc is dependent on direct binding of Smad3 to a novel repressive Smad binding element
-
355825 14993291 10.1128/MCB.24.6.2546-2559.2004
-
Frederick JP Liberati NT Waddell DS Shi Y Wang XF Transforming growth factor beta-mediated transcriptional repression of c-myc is dependent on direct binding of Smad3 to a novel repressive Smad binding element. Mol Cell Biol 2004 24 2546-2559 355825 14993291 10.1128/ MCB.24.6.2546-2559.2004
-
(2004)
Mol Cell Biol
, vol.24
, pp. 2546-2559
-
-
Frederick, J.P.1
Liberati, N.T.2
Waddell, D.S.3
Shi, Y.4
Wang, X.F.5
-
66
-
-
0030589649
-
Age-associated changes in basal c-fos transcription factor binding activity in rat hearts
-
10.1006/excr.1996.0388 8986626
-
Tsou H Azhar G Lu XG Kovacs S Peacocke M Wei JY Age-associated changes in basal c-fos transcription factor binding activity in rat hearts. Exp Cell Res 1996 229 432-437 10.1006/excr.1996.0388 8986626
-
(1996)
Exp Cell Res
, vol.229
, pp. 432-437
-
-
Tsou, H.1
Azhar, G.2
Lu, X.G.3
Kovacs, S.4
Peacocke, M.5
Wei, J.Y.6
-
67
-
-
12344334604
-
Isolation and characterization of the human Cdc2L1 gene promoter
-
10.1016/j.gene.2004.10.020 15656972
-
Kahle A Feng Y A Nelson M Isolation and characterization of the human Cdc2L1 gene promoter. Gene 2005 344 53-60 10.1016/j.gene.2004.10.020 15656972
-
(2005)
Gene
, vol.344
, pp. 53-60
-
-
Kahle, A.1
Feng, Y.A.2
Nelson, M.3
-
68
-
-
17044429330
-
A roller coaster ride with the mitotic cyclins
-
10.1016/j.semcdb.2005.02.014 15840442
-
Fung TK Poon RY A roller coaster ride with the mitotic cyclins. Semin Cell Dev Biol 2005 16 335-342 10.1016/j.semcdb.2005.02.014 15840442
-
(2005)
Semin Cell Dev Biol
, vol.16
, pp. 335-342
-
-
Fung, T.K.1
Poon, R.Y.2
-
69
-
-
0034824495
-
p300/CBP/p53 interaction and regulation of the p53 response
-
10.1046/j.1432-1327.2001.02226.x 11358491
-
Grossman SR p300/CBP/p53 interaction and regulation of the p53 response. Eur J Biochem 2001 268 2773-2778 10.1046/j.1432-1327.2001.02226.x 11358491
-
(2001)
Eur J Biochem
, vol.268
, pp. 2773-2778
-
-
Grossman, S.R.1
-
70
-
-
0030926190
-
Transcription factor GATA-2 is required for proliferation/survival of early hematopoietic cells and mast cell formation, but not for erythroid and myeloid terminal differentiation
-
9160668
-
Tsai FY Orkin SH Transcription factor GATA-2 is required for proliferation/survival of early hematopoietic cells and mast cell formation, but not for erythroid and myeloid terminal differentiation. Blood 1997 89 3636-3643 9160668
-
(1997)
Blood
, vol.89
, pp. 3636-3643
-
-
Tsai, F.Y.1
Orkin, S.H.2
-
71
-
-
0036162274
-
Repression of hepatocyte nuclear factor 4alpha tumor suppressor p53: Involvement of the ligand-binding domain and histone deacetylase activity
-
10.1210/me.16.2.402 11818510
-
Maeda Y Seidel SD Wei G Liu X Sladek FM Repression of hepatocyte nuclear factor 4alpha tumor suppressor p53: Involvement of the ligand-binding domain and histone deacetylase activity. Mol Endocrinol 2002 16 402-410 10.1210/me.16.2.402 11818510
-
(2002)
Mol Endocrinol
, vol.16
, pp. 402-410
-
-
Maeda, Y.1
Seidel, S.D.2
Wei, G.3
Liu, X.4
Sladek, F.M.5
-
73
-
-
0035831457
-
Interaction with p53 enhances binding of cisplatin-modified DNA by high mobility group 1 protein
-
10.1074/jbc.M008143200 11106654
-
Imamura T Izumi H Nagatani G Ise T Nomoto M Iwamoto Y Kohno K Interaction with p53 enhances binding of cisplatin-modified DNA by high mobility group 1 protein. J Biol Chem 2001 276 7534-7540 10.1074/ jbc.M008143200 11106654
-
(2001)
J Biol Chem
, vol.276
, pp. 7534-7540
-
-
Imamura, T.1
Izumi, H.2
Nagatani, G.3
Ise, T.4
Nomoto, M.5
Iwamoto, Y.6
Kohno, K.7
-
74
-
-
0035086097
-
The leukemogenic transcription factor E2a-Pbx1 induces expression of the putative N-myc and p53 target gene NDRG1 in Ba/F3 cells
-
10.1038/sj.leu.2402059 11237058
-
Rutherford MN Bayly GR Matthews BP Okuda T Dinjens WM Kondoh H LeBrun DP The leukemogenic transcription factor E2a-Pbx1 induces expression of the putative N-myc and p53 target gene NDRG1 in Ba/F3 cells. Leukemia 2001 15 362-370 10.1038/sj.leu.2402059 11237058
-
(2001)
Leukemia
, vol.15
, pp. 362-370
-
-
Rutherford, M.N.1
Bayly, G.R.2
Matthews, B.P.3
Okuda, T.4
Dinjens, W.M.5
Kondoh, H.6
LeBrun, D.P.7
-
75
-
-
33645752099
-
AP2alpha alters the transcriptional activity and stability of p53
-
10.1038/sj.onc.1209250 16288208
-
Stabach PR Thiyagarajan MM Woodfield GW Weigel RJ AP2alpha alters the transcriptional activity and stability of p53. Oncogene 2006 25 2148-2159 10.1038/sj.onc.1209250 16288208
-
(2006)
Oncogene
, vol.25
, pp. 2148-2159
-
-
Stabach, P.R.1
Thiyagarajan, M.M.2
Woodfield, G.W.3
Weigel, R.J.4
|