DBTSS, DataBase of Transcriptional Start Sites: Progress report 2004

Nucleic Acids Research

Volumn 32, Issue DATABASE ISS., 2004, Pages

  Suzuki, Yutaka ^a   Yamashita, Riu ^a   Sugano, Sumio ^a   Nakai, Kenta ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; TRANSCRIPTION FACTOR;

ARTICLE; BINDING SITE; CONTROLLED STUDY; DATABASE OF TRANSCRIPTIONAL START SITES; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC TRANSCRIPTION; HUMAN; MOLECULAR CLONING; MOUSE; NONHUMAN; NUCLEIC ACID DATABASE; NUCLEOTIDE SEQUENCE; PLASMODIUM; PRIORITY JOURNAL; PROMOTER REGION; SINGLE NUCLEOTIDE POLYMORPHISM; SPECIES DIVERSITY;

ANIMALS; DATABASES, NUCLEIC ACID; GENES; HUMANS; INTERNET; MICE; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS (GENETICS); RESPONSE ELEMENTS; TRANSCRIPTION FACTORS; TRANSCRIPTION INITIATION SITE;

EUKARYOTA;

EID: 0347756647     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (10)

1. Suzuki,Y. and Sugano,S. (2003) Construction of a full-length enriched and a 5′-end enriched cDNA library using the oligo-capping method. Methods Mol. Biol., 221, 73-91.
2. Suzuki,Y., Tsunoda,T., Sese,J., Taira,H., Mizushima-Sugano,J., Hata,H., Ota,T., Isogai,T., Tanaka,T., Nakamura,Y. et al. (2001) Identification and characterization of the potential promoter regions of 1031 kinds of human genes. Genome Res., 11, 677-684.
3. Suzuki,Y., Taira,H., Tsunoda,T., Mizushima-Sugano,J., Sese,J., Hata,H., Ota,T., Isogai,T., Tanaka,T., Morishita,S. et al. (2001) Diverse transcriptional initiation revealed by fine, large-scale mapping of mRNA start sites. EMBO Rep., 2, 388-393.
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6. Carninci,P. and Hayashizaki,Y. (1999) High-efficiency full-length cDNA cloning. Methods Enzymol., 303, 19-44.
7. The FANTOM consortium and the RIKEN Genome Exploration Research Group Phase I & II Team (2002) Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature, 420, 563-573.
8. Watanabe,J., Sasaki,M., Suzuki,Y. and Sugano,S. (2002) Analysis of transcriptomes of human malaria parasite Plasmodium falciparum using full-length enriched library: identification of novel genes and diverse transcription start sites of messenger RNAs. Gene, 291, 105-113.
9. Huang,X.Q., Hardison,R.C. and Miller,W. (1990) A space-efficient algorithm for local similarities. Comput. Appl. Biosci., 16, 373-381.
10. Matys,V., Fricke,E., Geffers,R., Gossling,E., Haubrock,M., Hehl,R., Hornischer,K., Karas,D., Kel,A. E,, Kel-Margoulis,O.V. et al. (2003) TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.