Methods for nutrigenomics and longevity studies in Drosophila effects of diets high in sucrose, palmitic acid, soy, or beef

Methods in Molecular Biology

Volumn 371, Issue , 2007, Pages 111-141

  Ye, Jiatao ^a   Cui, Xiangqin ^a   Loraine, Ann ^a   Bynum, Kerry ^a   Kim, Nam Chul ^a   White, Gregory ^a   De Luca, Maria ^a   Garfinkel, Mark D ^a   Lu, Xiangyi ^a   Ruden, Douglas M ^a  

^a NONE

Author keywords

Aging; Drosophila; Extreme diets; Longevity; Microarrays; Nutrigenomics

Indexed keywords

ENZYME INHIBITOR; MESSENGER RNA; PALMITIC ACID; SUCROSE; SWEETENING AGENT;

ANIMAL; BIOSYNTHESIS; COMPARATIVE STUDY; DIET; DROSOPHILA MELANOGASTER; DRUG EFFECT; FEMALE; GENE; GENE EXPRESSION REGULATION; GENETICS; LARVA; LONGEVITY; MALE; METABOLISM; PHYSIOLOGY; REVIEW;

ANIMALS; DIET; DROSOPHILA MELANOGASTER; ENZYME INHIBITORS; FEMALE; GENE EXPRESSION REGULATION; GENES, INSECT; LARVA; LONGEVITY; MALE; PALMITIC ACID; RNA, MESSENGER; SUCROSE; SWEETENING AGENTS;

EID: 34548710729     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1385/1-59745-361-7:111     Document Type: Article

References (106)

1. Jenkins, D. J., Kendall, C. W., Marchie, A., et al. (2003) Effects of a dietary portfolio of cholesterol-lowering foods vs lovastatin on serum lipids and C-reactive protein, [see comment]. JAMA 290, 502-510.
2. Jenkins, D. J., Kendall, C. W., Marchie, A., Augustin, L. S. (2004) Too much sugar, too much carbohydrate, or just too much? [comment]. Am. J. Clin. Nutr. 79, 711-712.
3. Jenkins, D. J., Kendall, C. W., Marchie, A., et al. (2003) Type 2 diabetes and the vegetarian diet. Am. J. Clin. Nutr. 78(3 Suppl), 610S-616S.
4. Hung, T., Sievenpiper, J. L., Marchie, A., Kendall, C. W., and Jenkins, D. J. (2003) Fat versus carbohydrate in insulin resistance, obesity, diabetes and cardiovascular disease, [see comment]. Curr. Opin. Clin. Nutr. Metabol. Care 6, 165-176.
5. Jenkins, D. J., Kendall, C. W., Faulkner, D., et al. (2002) A dietary portfolio approach to cholesterol reduction: combined effects of plant sterols, vegetable proteins, and viscous fibers in hypercholesterolemia. Metab. Clin. Exp. 51, 1596-1604.
6. Ruden, D. M., De Luca, M., Garfinkel, M. D., Bynum, K., and Lu, X. (2005) Drosophila nutrigenomics can provide clues to human gene-nutrient interactions. Ann. Rev. Nutr. 25, 21.1-21.4.
7. Canavoso, L. E., Jouni, Z. E., Karnas, K. J., Pennington, J. E., and Wells, M. A. (2001) Fat metabolism in insects. Ann. Rev. Nutr. 21, 23-46.
8. Arrese, E. L., Canavoso, L. E., Jouni, Z. E., Pennington, J. E., Tsuchida, K., and Wells, M. A. (2001) Lipid storage and mobilization in insects: current status and future directions. Insect Biochem. Mol. Biol. 31, 7-17.
9. Canavoso, L. E. and Wells, M. A. (2000) Metabolic pathways for diacylglycerol biosynthesis and release in the midgut of larval Manduca sexta. Insect Biochem. Mol. Biol. 30, 1173-1180.
10. Canavoso, L. E., Bertello, L. E., de Lederkremer, R. M., and Rubiolo, E. R. (1998) Effect of fasting on the composition of the fat body lipid of Dipetalogaster maximus, Triatoma infestans and Panstrongylus megistus (Hemiptera: Reduviidae). J. Comp. Physiol. B, Biochem. Syst. Environ. Physiol. 168, 549-554.
11. Parks, A. L., Cook, K. R., Belvin, M., et al. (2004) Systematic generation of high-resolution deletion coverage of the Drosophila melanogaster genome. Nat. Genet. 36, 288-292.
12. Bier, E. (2005) Drosophila, the golden bug, emerges as a tool for human genetics. Nat. Rev. Genet. 6, 9-23.
13. Sun, L. V., Chen, L., Greil, F., et al. (2003) Protein-DNA interaction mapping using genomic tiling path microarrays in Drosophila. Proc. Natl. Acad. Sci. USA 100, 9428-9433.
14. Mehta, T., Tanik, M., Allison, D. B. (2004) Towards sound epistemological foundations of statistical methods for high-dimensional biology. Nat. Genet. 36, 943-947.
15. Ashburner, M. (1989) Drosophila: A Laboratory Handbook. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
16. Rogina, B., Helfand, S. L., and Frankel, S. (2002) Longevity regulation by Drosophila Rpd3 deacetylase and caloric restriction. Science 298, 1745.
17. Tatar, M., Bartke, A., and Antebi, A. (2003) The endocrine regulation of aging by insulin-like signals. Science 299, 1346-1351.
18. Mair, W., Goymer, P., Pletcher, S. D., and Partridge, L. (2003) Demography of dietary restriction and death in Drosophila. [see comment]. Science 301, 1731-1733.
19. Wood, J. G., Rogina, B., Lavu, S., et al. (2004) Sirtuin activators mimic caloric restriction and delay ageing in metazoans. [erratum appears in Nature. 2004 Sep 2;431(7004):107]. Nature 430, 686-689.
20. Magwere, T., Chapman, T., and Partridge, L. (2004) Sex differences in the effect of dietary restriction on life span and mortality rates in female and male Drosophila melanogaster. J. Gerontol. A, Biol. Sci. Med. Sci. 59, 3-9.
21. Finch, C. E. and Ruvkun, G. (2001) The genetics of aging. Annu. Rev. Genomics Hum. Genet. 2, 435-462.
22. Inoue, K., Fei, Y. J., Huang, W., Zhuang, L., Chen, Z., and Ganapathy, V. (2002) Functional identity of Drosophila melanogaster Indy as a cation-independent, electroneutral transporter for tricarboxylic acid-cycle intermediates. Biochem. J. 367(Pt 2), 313-319.
23. Pletcher, S. D., Macdonald, S. J., Marguerie, R., et al. (2002) Genome-wide transcript profiles in aging and calorically restricted Drosophila melanogaster. Curr. Biol. 12, 712-723.
24. Driver, C. J. I. and Cosopodiotis, G. (1979) The effect of dietary fat on longevity of Drosophila melanogaster. Exp. Gerontol. 14, 95-100.
25. Driver, C. J. and Lamb, M. J. (1980) Metabolic changes in ageing Drosophila melanogaster. Exp. Gerontol. 15, 167-175.
26. Driver, C. J., Wallis, R., Cosopodiotis, G., and Ettershank, G. (1986) Is a fat metabolite the major diet dependent accelerator of aging? Exp. Gerontol. 21, 497-507.
27. Tu, M. P. and Tatar, M. (2003) Juvenile diet restriction and the aging and reproduction of adult Drosophila melanogaster. Aging Cell 2, 327-333.
28. U.S. Food and Drug Administration (1999) Food Labeling Health Claims; Protein and Coronary Heart Disease; Final Rule.
29. United States. Dept. of Health and Human Services., United States. Dept. of Agriculture., United States. Dietary Guidelines Advisory Committee. (2005) Dietary guidelines for Americans, [6th ed. [Washington, D.C.: G.P.O.; 2005.
30. Yzebe, D. and Lievre, M. (2004) Fish oils in the care of coronary heart disease patients: a meta-analysis of randomized controlled trials. Fundamental & Clinical Pharmacology 18, 581-592.
31. Siddiqui, R. A., Shaikh, S. R., Sech, L. A., Yount, H. R., Stillwell, W., and Zaloga, G. P. (2004) Omega 3-fatty acids: health benefits and cellular mechanisms of action. Mini Rev. Med. Chem. 4(8), 859-871.
32. von Schacky, C. (2004) Omega-3 fatty acids and cardiovascular disease. Curr. Opin. Clin. Nutr. Metab. Care 7(2), 131-136.
33. Young, C. and Martin, A. (2003) Omega-3 fatty acids in mood disorders: an overview. Revista Brasileira de Psiquiatria 25(3), 184-187.
34. McGrath-Hanna, N. K., Greene, D. M., Tavernier, R. J., Bult-Ito, A. (2003) Diet and mental health in the Arctic: is diet an important risk factor for mental health in circumpolar peoples? - a review. Int. J. Circumpolar Health 62(3), 228-241.
35. Fenwick, D. E. and Oakenfull, D. (1983) Saponin content of food plants and some prepared foods. J. Sci. Food Agrie. 34(2), 186-191.
36. Anderson, R. L. and Wolf, W. J. (1995) Compositional changes in trypsin inhibitors, phytic acid, saponins and isoflavones related to soybean processing. J. Nutr. 125(3 Suppl), 581S-588S.
37. Greaves, K. A., Parks, J. S., Williams, J. K., and Wagner, J. D. (1999) Intact dietary soy protein, but not adding an isoflavone-rich soy extract to casein, improves plasma lipids in ovariectomized cynomolgus monkeys, [see comment]. J. Nutr. 129(8), 1585-1592.
38. Lucas, E. A., Khalil, D. A., Daggy, B. P., and Arjmandi, B. H. (2001) Ethanol-extracted soy protein isolate does not modulate serum cholesterol in golden Syrian hamsters: a model of postmenopausal hypercholesterolemia, [see comment]. J. Nutr. 131(2), 211-214.
39. Oakenfull, D. and Sidhu, G. S. (1990) Could saponins be a useful treatment for hypercholesterolaemia? Eur. J. Clin. Nutr. 44(1), 79-88.
40. Sidhu, G. S. and Oakenfull, D. G. A mechanism for the hypocholesterolaemic activity of saponins. Br. J. Nutr. 55(3), 643-649.
41. Oakenfull, D. G. and Topping, D. L. (1983) Saponins and plasma cholesterol. Atherosclerosis 48(3), 301-303.
42. Hood, R. L., Oakenfull, D. G., and Topping, D. L. (1979) Dietary saponins and plasma cholesterol. Proc. Nutr. Soc. 38(2), 78A.
43. Potter, J. D., Topping, D. L., and Oakenfull, D. (1979) Soya, saponins, and plasma-cholesterol. Lancet 1(8109), 223.
44. Wagner, J. D., Schwenke, D. C., Greaves, K. A., et al. (2003) Soy protein with isoflavones, but not an isoflavone-rich supplement, improves arterial low-density lipoprotein metabolism and atherogenesis. Arterioscler. Thromb. Vase. Biol. 23(12), 2241-2246.
45. Wagner, J. D., Zhang, L., Greaves, K. A., Shadoan, M. K., and Schwenke, D. C. (2000) Soy protein reduces the arterial low-density lipoprotein (LDL) concentration and delivery of LDL cholesterol to the arteries of diabetic and nondiabetic male cynomolgus monkeys. Metab. Clin. Exp. 49(9), 1188-1196.
46. Yousef, M. I., Esmail, A. M., and Baghdadi, H. H. (2004) Effect of isoflavones on reproductive performance, testosterone levels, lipid peroxidation, and seminal plasma biochemistry of male rabbits. J Environ. Sci. Health B 39(5-6), 819-833.
47. Yousef, M. I., Kamel, K. I., Esmail, A. M., and Baghdadi, H. H. (2004) Antioxidant activities and lipid lowering effects of isoflavone in male rabbits. Food Chem. Toxicol. 42(9), 1497-1503.
48. Adlercreutz, H. (1998) Evolution, nutrition, intestinal microflora, and prevention of cancer: a hypothesis. Proc. Soc. Exp. Biol. Med. 217(3), 241-246.
49. Adlercreutz, H. (1990) Western diet and Western diseases: some hormonal and biochemical mechanisms and associations. Scand. J. Clin. Lab. Invest. Supplement 201, 3-23.
50. Boyle, P., Maisonneuve, P., and Napalkov, P. (1995) Geographical and temporal patterns of incidence and mortality from prostate cancer. Urology 46(3 SupplA), 47-55.
51. Napalkov, P., Maisonneuve, P., and Boyle, P. (1995) Worldwide patterns of prevalence and mortality from benign prostatic hyperplasia. Urology 46(3 Suppl A), 41-46.
52. Boyle, P. and Napalkov, P. (1995) The epidemiology of benign prostatic hyperplasia and observations on concomitant hypertension. Scand. J. Urol. Nephrol. Supplementum 168, 7-12.
53. Boyle, P., Maisonneuve, P., and Napalkov, P. (1996) Incidence of prostate cancer will double by the year 2030: the argument for. Eur. Neurol. 29(Suppl 2), 3-9.
54. Griffiths, K. (2000) Estrogens and prostatic disease. International Prostate Health Council Study Group. Prostate 45(2), 87-100.
55. Dai, Q., Shu, X. O., Jin, F., et al. (2001) Population-based case-control study of soyfood intake and breast cancer risk in Shanghai. Br. J. Cancer 85(3), 372-378.
56. Atkins, R. C. (2002) Dr. Atkins' New Diet Revolution. Avon, New York.
57. Agatston, A. (2003) The South Beach Diet. Random House, New York.
58. Eades, M. R. and Eades, M. D. (1996) Protein Power. Bantam, New York.
59. Willett, W. C. (2004) Reduced-carbohydrate diets: no roll in weight management [comment]. Ann. Int. Med. 140(10), 836-837.
60. Feinman, R. D. and Fine, E. J. (2004) "A calorie is a calorie" violates the second law of thermodynamics. Nutrition J 3(9), 1-5.
61. Jequier, E. (2002) Pathways to obesity. Int. J. Obes. Relat. Metab. Disord. 26(Suppl 2), S12-S17.
62. Flegal, K. M., Graubard, B. I., Williamson, D. F., and Gail, M. H. (2005) Excess deaths associated with underweight, overweight, and obesity. JAMA 293(15), 1861-1867.
63. Mittler, S. (1979) Failure of irradiated beef and ham to induce genetic aberrations in Drosophila. Int. J. Radiat. Biol. Relat. Stud. Phys. Chem. Med. 35(6), 583-588.
64. Reyes, N., Iatropoulos, M., Mittelman, A., and Geliebter, J. (2002) Microarray analysis of diet-induced alterations in gene expression in the ACI rat prostate. European Journal of Cancer Prevention 11(Suppl 2), S37-S42.
65. Zhang, X. B., Tao, K., Urlando, C., Shaver-Walker, P., and Heddle, J. A. (1996) Mutagenicity of high fat diets in the colon and small intestine of transgenic mice. Mutagenesis 11(1), 43-48.
66. Ruby, S., Mendoza, L. T., Fournier, M., Brousseau, P., and Degas, V. (2003) Reproductive system impairment of mice fed diets containing beluga whale blubber from the St Lawrence estuary and arctic populations. J. Toxicol. Environ. Health Part A 66(11), 1073-1085.
67. Thibault, S. T., Singer, M. A., Miyazaki, W. Y., et al. (2004) A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac. [see comment]. Nat. Genet. 36(3), 283-287.
68. Clark, A. G. and Keith, L. E. (1988) Variation among extracted lines of Drosophila melanogaster in triacylglycerol and carbohydrate storage. Genetics 119(3), 595-607.
69. Capuano, P., Radanovic, T., Wagner, C. A., et al. (2005) Intestinal and renal adaptation to a low-Pi diet of type II NaPi cotransporters in vitamin D receptor- and lalphaOHase-deficient mice. Am. J. Physiol. Cell Physiol. 288(2), C429-C434.
70. Ascendo, C., Torres, N., Isoard-Acosta, F., Gomez-Perez, F. J., Hernandez-Pando, R., and Tovar, A. R. (2004) Soy protein affects serum insulin and hepatic SREBP-I mRNA and reduces fatty liver in rats. J. Nutr. 134(3), 522-529.
71. Tatematsu, K., Fuma, S. Y., Satoh, J., Ichikawa, Y., Fujii, Y., and Okuyama, H. (2004) Dietary canola and soybean oil fed to SHRSP rat dams differently affect the growth and survival of their male pups. J. Nutr. 134(6), 1347-1352.
72. Colombani, P. C. (2004) Glycemic index and load-dynamic dietary guidelines in the context of diseases. Physiol. Behav. 83(4), 603-610.
73. Partridge, L., Pletcher, S. D., and Mair, W. (2005) Dietary restriction, mortality trajectories, risk and damage. Mech. Ageing Dev. 126, 35-41.
74. Curtsinger, J. W., Fukui, H. H., Khazaeli, A. A., et al. (1995) Genetic variation and aging. Ann. Rev. Genet. 29, 553-575.
75. Tatar, M., Promislow, D. E., Khazaeli, A. A., and Curtsinger, J. W. (1996) Age-specific patterns of genetic variance in Drosophila melanogaster. II. Fecundity and its genetic covariance with age-specific mortality. Genetics 143(2), 849-858.
76. Promislow, D. E., Smith, E. A., and Pearse, L. (1998) Adult fitness consequences of sexual selection in Drosophila melanogaster. Proc. Natil. Acad. Sci. USA 95(18), 10,687-10,692.
77. Garfinkel, M. D., Sollars, V. E., Lu, X., and Ruden, D. M. (2004) Multigenerational selection and detection of altered histone acetylation and methylation patterns: toward a quantitative epigenetics in Drosophila. Methods Mol. Biol. 287, 151-168.
78. Carver, R. H. and Nash, J. G. (2005) Doing data analysis with SPSS version 12.0. Thomson/Brooks/Cole, Belmont, CA.
79. Koochmeshgi, J., Ladonni, S., and Hosseini-Mazinani, S. M. (2004) Investigations on the nature of the cost of reproduction: susceptibility to heat stress in fruitflies. Ann. NY Acad. Sci. 1019, 368-369.
80. Bauer, J. H., Goupil, S., Garber, G. B., and Helfand, S. L. (2004) An accelerated assay for the identification of lifespan-extending interventions in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 101(35), 12,980-12,985.
81. Cui, X. and Churchill, G. A. (2003) Statistical tests for differential expression in cDNA microarray experiments. Genome Biol. 4(4), 210.
82. Cui, X., Hwang, J. T. G., Qiu, J., Blades, N. J., and Churchill, G. A. (2005) Improved statistical tests for differential gene expression by shrinking variance component estimates. Biostatistics 6(1), 59-75.
83. Benjamini, Y., Drai, D., Elmer, G., Kafkafi, N., and Golani, I. (2001) Controlling the false discovery rate in behavior genetics research.[comment]. Behav. Brain Res. 125(1-2), 279-284.
84. Wolfinger, R. D., Gibson, G., Wolfinger, E. D., et al. (2001) Assessing gene significance from cDNA microarray expression data via mixed models. J. Comput. Biol. 8(6), 625-637.
85. McAuley, K. A., Hopkins, C. M., Smith, K. J., et al. (2005) Comparison of high-fat and high-protein diets with a high-carbohydrate diet in insulin-resistant obese women. Diabetologia 48(1), 8-16.
86. Liang, H., Masoro, E. J., Nelson, J. F., Strong, R., McMahan, C. A., and Richardson, A. (2003) Genetic mouse models of extended lifespan. Exp. Gerontol. 38, 1353-1364.
87. Sharpe, R. M., Martin, B., Morris, K., et al. (2002) Infant feeding with soy formula milk: effects on the testis and on blood testosterone levels in marmoset monkeys during the period of neonatal testicular activity. Hum. Reprod. 17, 1692-1703.
88. Sharpe, R. M. (2003) The 'oestrogen hypothesis' - where do we stand now? Int. J. Androl. 26, 2-15.
89. The British Dietetic Association. (2003) Paediatric group position statement on the use of soya protein for infants. J. Fam. Health Care 13, 93.
90. Simon, A. F., Shih, C., Mack, A., and Benzer, S. (2003) Steroid control of longevity in Drosophila melanogaster. Science 299, 1407-1410.
91. Tatar, M. (2003) Unearthing loci that influence life span. Sci. Aging Knowledge Emiron. 2003(9), PE5.
92. Tatar, M. (2004) The neuroendocrine regulation of Drosophila aging. Exp. Gerontol. 39, 1745-1750.
93. Xiao, R., Badger, T. M. , and Simmen, F. A. (2005) Dietary exposure to soy or whey proteins alters colonic global gene expression profiles during rat colon tumorigenesis. Mol. Cancer 4(1), 1-17.
94. Levin, B. E. (2000) Metabolic imprinting on genetically predisposed neural circuits perpetuates obesity. Nutrition 16, 909-915.
95. Levin, B. E. (2000) The obesity epidemic: metabolic imprinting on genetically susceptible neural circuits. Obes. Res. 8, 342-347.
96. Finch, C. E. and Loehlin, J. C. (1998) Environmental influences that may precede fertilization: a first examination of the prezygotic hypothesis from maternal age influences on twins. Behav. Genet. 28, 101-106.
97. Inui, A. (2003) Obesity-a chronic health problem in cloned mice? Trends Pharmacol. Sci. 24, 77-80.
98. Partridge, L., Piper, M. D., and Mair, W. (2005) Dietary restriction in Drosophila. Mech. Ageing Dev. 126, 938-950.
99. Piper, M. D., Mair, W., and Partridge, L. (2005) Counting the calories: the role of specific nutrients in extension of life span by food restriction. J. Gerontol. A. Biol. Sci. Med. Sci. 60, 549-555.
100. Carvalho, G. B., Kapahi, P., and Benzer, S. (2005) Compensatory ingestion upon dietary restriction in Drosophila melanogaster. Nat. Methods 2, 813-815.
101. Morgan E. (1982) The aquatic ape: a theory of human evolution. Souvenir Press, London.
102. Bourre, J. M. (2005) Dietary omega-3 Fatty acids and psychiatry: mood, behaviour, stress, depression, dementia and aging. J. Nutr. Health Aging 9, 31-38.
103. Bourre, J. M. (2005) Where to find omega-3 fatty acids and how feeding animals with diet enriched in omega-3 fatty acids to increase nutritional value of derived products for human: what is actually useful? J. Nutr. Health Aging 9, 232-242.
104. Bourre, J. M. (2004) Roles of unsaturated fatty acids (especially omega-3 fatty acids) in the brain at various ages and during ageing. J. Nutr. Health Aging 8, 163-174.
105. Bourre, J. M. and Dumont, O. (2003) Dietary oleic acid not used during brain development and in adult in rat, in contrast with sciatic nerve. Neurosci. Lett. 336, 180-184.
106. SPSS Inc. (1997) SPSS advanced statistics 7.5. SPSS Inc.: Chicago.