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Volumn 69, Issue 1, 2007, Pages 160-176

Evaluation of docking programs for predicting binding of Golgi α-mannosidase II inhibitors: A comparison with crystallography

Author keywords

Crystal structure; FITTED; Glide; Scoring; Virtual screening

Indexed keywords

1 DEOXYMANNONOJIRIMYCIN; ALPHA MANNOSIDASE; ENZYME INHIBITOR; KIFUNENSINE; PHENYLGLYCINOL; PYRROLIDINE DERIVATIVE; SALACINOL; SWAINSONINE; UNCLASSIFIED DRUG; ZINC;

EID: 34548304863     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.21479     Document Type: Article
Times cited : (59)

References (81)
  • 1
    • 0001094662 scopus 로고    scopus 로고
    • Glycobiology: Toward understanding the function of sugars
    • Dwek RA. Glycobiology: toward understanding the function of sugars. Chem Rev 1996;96:683-720.
    • (1996) Chem Rev , vol.96 , pp. 683-720
    • Dwek, R.A.1
  • 2
    • 0021891884 scopus 로고
    • Assembly of asparagine-linked oligosaccharides
    • Kornfeld R, Kornfeld S. Assembly of asparagine-linked oligosaccharides. Annu Rev Biochem 1985;54:631-664.
    • (1985) Annu Rev Biochem , vol.54 , pp. 631-664
    • Kornfeld, R.1    Kornfeld, S.2
  • 3
    • 0036462601 scopus 로고    scopus 로고
    • Protein N-glycosylation along the secretory pathway: Relationship to organelle topography and function, protein quality control, and cell interactions
    • Roth J. Protein N-glycosylation along the secretory pathway: relationship to organelle topography and function, protein quality control, and cell interactions. Chem Rev 2002;102:285-303.
    • (2002) Chem Rev , vol.102 , pp. 285-303
    • Roth, J.1
  • 4
    • 0032714568 scopus 로고    scopus 로고
    • Importance of glycosidases in mammalian glycoprotein biosynthesis
    • Herscovics A. Importance of glycosidases in mammalian glycoprotein biosynthesis. Biochim Biophys Acta 1999;1473:96-107.
    • (1999) Biochim Biophys Acta , vol.1473 , pp. 96-107
    • Herscovics, A.1
  • 5
    • 0028213490 scopus 로고
    • Glycosidases of the asparagine-linked oligosaccharide processing pathway
    • Moremen KW, Trimble RB, Herscovics A. Glycosidases of the asparagine-linked oligosaccharide processing pathway. Glycobiology 1994; 4:113-125.
    • (1994) Glycobiology , vol.4 , pp. 113-125
    • Moremen, K.W.1    Trimble, R.B.2    Herscovics, A.3
  • 6
    • 0031971883 scopus 로고    scopus 로고
    • Enzyme action in glycoprotein synthesis
    • Sears P, Wong CH. Enzyme action in glycoprotein synthesis. Cell Mol Life Sci 1998;54:223-252.
    • (1998) Cell Mol Life Sci , vol.54 , pp. 223-252
    • Sears, P.1    Wong, C.H.2
  • 7
    • 0029128356 scopus 로고
    • Inhibitors of carbohydrate processing: A new class of anticancer agents
    • Goss PE, Baker MA, Carver JP, Dennis JW. Inhibitors of carbohydrate processing: a new class of anticancer agents. Clin Cancer Res 1995;1:935-944.
    • (1995) Clin Cancer Res , vol.1 , pp. 935-944
    • Goss, P.E.1    Baker, M.A.2    Carver, J.P.3    Dennis, J.W.4
  • 8
    • 0033135747 scopus 로고    scopus 로고
    • Protein glycosylation in development and disease
    • Dennis JW, Granovsky M, Warren CE. Protein glycosylation in development and disease. Bio Essays 1999;21:412-421.
    • (1999) Bio Essays , vol.21 , pp. 412-421
    • Dennis, J.W.1    Granovsky, M.2    Warren, C.E.3
  • 10
    • 0034467007 scopus 로고    scopus 로고
    • Metastases: The glycan connection
    • Couldrey C, Green JE. Metastases: the glycan connection. Breast Cancer Res 2000;2:321-323.
    • (2000) Breast Cancer Res , vol.2 , pp. 321-323
    • Couldrey, C.1    Green, J.E.2
  • 11
    • 0003063818 scopus 로고    scopus 로고
    • Inhibitors of glycoprotein processing
    • Stütz AE, editor, Weinheim: Wiley-VCH;
    • Elbein AD, Molyneux RD. Inhibitors of glycoprotein processing. In: Stütz AE, editor. Iminosugars as glycosidase inhibitors. Weinheim: Wiley-VCH; 1999. pp 216-251.
    • (1999) Iminosugars as glycosidase inhibitors , pp. 216-251
    • Elbein, A.D.1    Molyneux, R.D.2
  • 12
    • 0001423353 scopus 로고
    • Spectroscopic investigation of swainsonine - alpha-mannosidase inhibitor isolated from Swainsona-Canescens
    • Colegate SM, Dorling PR, Huxtable CR. Spectroscopic investigation of swainsonine - alpha-mannosidase inhibitor isolated from Swainsona-Canescens. Aust J Chem 1979;32:2257-2264.
    • (1979) Aust J Chem , vol.32 , pp. 2257-2264
    • Colegate, S.M.1    Dorling, P.R.2    Huxtable, C.R.3
  • 13
    • 0021972048 scopus 로고
    • Studies of an immunomodulator, swainsonine. II. Effect of swainsonine on mouse immunodeficient system and experimental murine tumor
    • Kino T, Inamura N, Nakahara K. Studies of an immunomodulator, swainsonine. II. Effect of swainsonine on mouse immunodeficient system and experimental murine tumor J Antibiot 1985;38:936-940.
    • (1985) J Antibiot , vol.38 , pp. 936-940
    • Kino, T.1    Inamura, N.2    Nakahara, K.3
  • 14
    • 0030878261 scopus 로고    scopus 로고
    • Phase IB clinical trial of the oligosaccharide processing inhibitor swainsonine in patients with advanced malignancies
    • Goss PE, Reid CL, Bailey D, Dennis JW. Phase IB clinical trial of the oligosaccharide processing inhibitor swainsonine in patients with advanced malignancies. Clin Cancer Res 1997;3:1077-1086.
    • (1997) Clin Cancer Res , vol.3 , pp. 1077-1086
    • Goss, P.E.1    Reid, C.L.2    Bailey, D.3    Dennis, J.W.4
  • 17
    • 0035875663 scopus 로고    scopus 로고
    • Structure of Golgi α-mannosidase II: A target for inhibition of growth and metastasis of cancer cells
    • Van den Elsen JMH, Kuntz DA, Rose DR. Structure of Golgi α-mannosidase II: a target for inhibition of growth and metastasis of cancer cells. EMBO J 2001;20:3008-3017.
    • (2001) EMBO J , vol.20 , pp. 3008-3017
    • Van den Elsen, J.M.H.1    Kuntz, D.A.2    Rose, D.R.3
  • 18
    • 0348111459 scopus 로고    scopus 로고
    • Insights into the Mechanism of Drosophila melanogaster Golgi α-Mannosidase II through the structural analysis of covalent reaction intermediates
    • Numao S, Kuntz DA, Withers SG, Rose DR. Insights into the Mechanism of Drosophila melanogaster Golgi α-Mannosidase II through the structural analysis of covalent reaction intermediates. J Biol Chem 2003;278:48074-48083.
    • (2003) J Biol Chem , vol.278 , pp. 48074-48083
    • Numao, S.1    Kuntz, D.A.2    Withers, S.G.3    Rose, D.R.4
  • 19
    • 34548308377 scopus 로고    scopus 로고
    • Crystal structure of drosophila α-mannosidase II and swainsonine complexes its use for identifying mannosidase II activity-modulating ligands and therapeutic
    • applications. US Patent Appl 2002172670
    • Rose DR, Kuntz DA, van den Elsen JMH. Crystal structure of drosophila α-mannosidase II and swainsonine complexes its use for identifying mannosidase II activity-modulating ligands and therapeutic applications. US Patent Appl 2002172670, 2002.
    • (2002)
    • Rose, D.R.1    Kuntz, D.A.2    van den Elsen, J.M.H.3
  • 21
    • 33746465842 scopus 로고    scopus 로고
    • Dock around the clock - current status of small molecule docking and scoring
    • Rester U. Dock around the clock - current status of small molecule docking and scoring. QSAR Comb Sci 2006;25:605-615.
    • (2006) QSAR Comb Sci , vol.25 , pp. 605-615
    • Rester, U.1
  • 22
    • 33745199815 scopus 로고    scopus 로고
    • Virtual ligand screening: Strategies, perspectives and limitations
    • Klebe G. Virtual ligand screening: strategies, perspectives and limitations. Drug Discov Today 2006;11:580-594.
    • (2006) Drug Discov Today , vol.11 , pp. 580-594
    • Klebe, G.1
  • 23
    • 27644453181 scopus 로고    scopus 로고
    • The challenge of considering receptor flexibility in ligand docking and virtual screening
    • Cavasotto CN, Orry AJW, Abagyan RA. The challenge of considering receptor flexibility in ligand docking and virtual screening. Curr Comput-Aided Drug Des 2005;1:423-440.
    • (2005) Curr Comput-Aided Drug Des , vol.1 , pp. 423-440
    • Cavasotto, C.N.1    Orry, A.J.W.2    Abagyan, R.A.3
  • 25
    • 0031552362 scopus 로고    scopus 로고
    • Development and validation of a genetic algorithm for flexible docking
    • Jones G, Willett P, Glen RC, Leach AR, Taylor R. Development and validation of a genetic algorithm for flexible docking. J Mol Biol 1997;267:727-748.
    • (1997) J Mol Biol , vol.267 , pp. 727-748
    • Jones, G.1    Willett, P.2    Glen, R.C.3    Leach, A.R.4    Taylor, R.5
  • 26
    • 0030599010 scopus 로고    scopus 로고
    • A fast flexible docking method using an incremental construction algorithm
    • Rarey M, Kramer B, Lengauer T, Klebe G. A fast flexible docking method using an incremental construction algorithm. J Mol Biol 1996;261:470-489.
    • (1996) J Mol Biol , vol.261 , pp. 470-489
    • Rarey, M.1    Kramer, B.2    Lengauer, T.3    Klebe, G.4
  • 27
    • 0037212102 scopus 로고    scopus 로고
    • LigandFit: A novel method for the shape-directed rapid docking of ligands to protein active sites
    • Venkatachalam CM, Jiang X, Oldfield T, Waldman M. LigandFit: a novel method for the shape-directed rapid docking of ligands to protein active sites. J Mol Graphics Model 2003;21:289-307.
    • (2003) J Mol Graphics Model , vol.21 , pp. 289-307
    • Venkatachalam, C.M.1    Jiang, X.2    Oldfield, T.3    Waldman, M.4
  • 30
    • 34247197110 scopus 로고    scopus 로고
    • Corbeil CR, Englebienne P, Moitessier N. Docking ligands into flexible and solvated macromolecules, Part 1. Development and validation of FITTED 1.0. J Chem Inf Model 2007;47:435-439.
    • Corbeil CR, Englebienne P, Moitessier N. Docking ligands into flexible and solvated macromolecules, Part 1. Development and validation of FITTED 1.0. J Chem Inf Model 2007;47:435-439.
  • 31
    • 12344321087 scopus 로고    scopus 로고
    • Crystallographic analysis of the interactions of Drosophila melanogaster Golgi α-mannosidase II with the naturally occurring glycomimetic salacinol and its analogues
    • Kuntz DA, Ghavami A, Johnston BD, Pinto BM, Rose DR. Crystallographic analysis of the interactions of Drosophila melanogaster Golgi α-mannosidase II with the naturally occurring glycomimetic salacinol and its analogues. Tetrahedron: Asymmetry 2005;16:25-32.
    • (2005) Tetrahedron: Asymmetry , vol.16 , pp. 25-32
    • Kuntz, D.A.1    Ghavami, A.2    Johnston, B.D.3    Pinto, B.M.4    Rose, D.R.5
  • 32
    • 0344412962 scopus 로고    scopus 로고
    • Comparison of kifunensine and 1-deoxymannojirimycin binding to class I and II a-mannosidases demonstrates different saccharide distortions in inverting and retaining catalytic mechanisms
    • Shah N, Kuntz DA, Rose DR. Comparison of kifunensine and 1-deoxymannojirimycin binding to class I and II a-mannosidases demonstrates different saccharide distortions in inverting and retaining catalytic mechanisms. Biochemistry 2003;42:13812-13816.
    • (2003) Biochemistry , vol.42 , pp. 13812-13816
    • Shah, N.1    Kuntz, D.A.2    Rose, D.R.3
  • 33
    • 34548311501 scopus 로고    scopus 로고
    • Maestro. 7.0. Portland, OR: Schrödinger, LLC; 2004.
    • Maestro. 7.0. Portland, OR: Schrödinger, LLC; 2004.
  • 34
    • 34548363205 scopus 로고    scopus 로고
    • Jaguar. 6.0. Portland, OR: Schrödinger, LLC; 2004.
    • Jaguar. 6.0. Portland, OR: Schrödinger, LLC; 2004.
  • 35
    • 0000111275 scopus 로고    scopus 로고
    • Parallel ab initio and molecular mechanics investigation of polycoordinated Zn(II) complexes with model hard and soft ligands: Variations of binding energy and of its components with number and charges of ligands
    • Tiraboschi G, Gresh N, Giessner-Prettre C, Pedersen LG, Deerfield DW. Parallel ab initio and molecular mechanics investigation of polycoordinated Zn(II) complexes with model hard and soft ligands: variations of binding energy and of its components with number and charges of ligands. J Comput Chem 2000;21:1011-1039.
    • (2000) J Comput Chem , vol.21 , pp. 1011-1039
    • Tiraboschi, G.1    Gresh, N.2    Giessner-Prettre, C.3    Pedersen, L.G.4    Deerfield, D.W.5
  • 36
    • 34548316512 scopus 로고    scopus 로고
    • Sybyl. 7.0. St. Louis, MO: Tripos, Inc.; 2005.
    • Sybyl. 7.0. St. Louis, MO: Tripos, Inc.; 2005.
  • 37
    • 49149147973 scopus 로고
    • Iterative partial equalization of orbital electronegativity - a rapid access to atomic charges
    • Gasteiger J, Marsili M. Iterative partial equalization of orbital electronegativity - a rapid access to atomic charges. Tetrahedron 1980; 36:3219-3228.
    • (1980) Tetrahedron , vol.36 , pp. 3219-3228
    • Gasteiger, J.1    Marsili, M.2
  • 38
    • 34548331059 scopus 로고    scopus 로고
    • Cerius2. 4.10. San Diego, CA: Accelrys, Inc.; 2005.
    • Cerius2. 4.10. San Diego, CA: Accelrys, Inc.; 2005.
  • 40
    • 14344255190 scopus 로고    scopus 로고
    • 5-Thio-D-glycopyranosylamines and their amidinium salts as potential transition-state mimics of glycosyl hydrolases: Synthesis, enzyme inhibitory activities, X-ray crystallography, and molecular modeling
    • Kavlekar LM, Kuntz DA, Wen X, Johnston BD, Svensson B, Rose DR, Pinto BM. 5-Thio-D-glycopyranosylamines and their amidinium salts as potential transition-state mimics of glycosyl hydrolases: synthesis, enzyme inhibitory activities, X-ray crystallography, and molecular modeling. Tetrahedron: Asymmetry 2005;16:1035-1046.
    • (2005) Tetrahedron: Asymmetry , vol.16 , pp. 1035-1046
    • Kavlekar, L.M.1    Kuntz, D.A.2    Wen, X.3    Johnston, B.D.4    Svensson, B.5    Rose, D.R.6    Pinto, B.M.7
  • 41
    • 0042305005 scopus 로고    scopus 로고
    • Synthesis and α-mannosidase inhibitory evaluation of (2R,3R,4S)- and (2S,3R,4S)-2-(aminomethyl)pyrrolidine-3,4-diol derivatives
    • Popowycz F, Gerber-Lemaire S, Rodriguez-García E, Schütz C, Vogel P. Synthesis and α-mannosidase inhibitory evaluation of (2R,3R,4S)- and (2S,3R,4S)-2-(aminomethyl)pyrrolidine-3,4-diol derivatives. Helv Chim Acta 2003;86:1914-1948.
    • (2003) Helv Chim Acta , vol.86 , pp. 1914-1948
    • Popowycz, F.1    Gerber-Lemaire, S.2    Rodriguez-García, E.3    Schütz, C.4    Vogel, P.5
  • 42
    • 2342562946 scopus 로고    scopus 로고
    • Syntheses and glycosidase inhibitory activities of 2-(Aminomethyl)-5-(hydroxymethyl) pyrrolidine-3,4-diol derivatives
    • Popowycz F, Gerber-Lemaire S, Schütz C, Vogel P. Syntheses and glycosidase inhibitory activities of 2-(Aminomethyl)-5-(hydroxymethyl) pyrrolidine-3,4-diol derivatives. Helv Chim Acta 2004;87:800-810.
    • (2004) Helv Chim Acta , vol.87 , pp. 800-810
    • Popowycz, F.1    Gerber-Lemaire, S.2    Schütz, C.3    Vogel, P.4
  • 44
    • 32344449937 scopus 로고    scopus 로고
    • Docking of aminoglycosides to hydrated and flexible RNA
    • Moitessier N, Westhof E, Hanessian S. Docking of aminoglycosides to hydrated and flexible RNA. J Med Chem 2006;49:1023-1033.
    • (2006) J Med Chem , vol.49 , pp. 1023-1033
    • Moitessier, N.1    Westhof, E.2    Hanessian, S.3
  • 46
    • 4544367743 scopus 로고    scopus 로고
    • Comparative evaluation of eight docking tools for docking and virtual screening accuracy
    • Kellenberger E, Rodrigo J, Muller P, Rognan D. Comparative evaluation of eight docking tools for docking and virtual screening accuracy. Proteins 2004;57:225-242.
    • (2004) Proteins , vol.57 , pp. 225-242
    • Kellenberger, E.1    Rodrigo, J.2    Muller, P.3    Rognan, D.4
  • 47
    • 0035571790 scopus 로고    scopus 로고
    • A comparative docking study and the design of potentially selective MMP inhibitors
    • Hanessian S, Moitessier N, Therrien E. A comparative docking study and the design of potentially selective MMP inhibitors. J Comput-Aided Mol Des 2001;15:873-881.
    • (2001) J Comput-Aided Mol Des , vol.15 , pp. 873-881
    • Hanessian, S.1    Moitessier, N.2    Therrien, E.3
  • 48
    • 0035855834 scopus 로고    scopus 로고
    • Design and synthesis of matrix metalloproteinase inhibitors guided by molecular modeling. Picking the S1 pocket using conformationally constrained inhibitors
    • Hanessian S, MacKay DB, Moitessier N. Design and synthesis of matrix metalloproteinase inhibitors guided by molecular modeling. Picking the S1 pocket using conformationally constrained inhibitors. J Med Chem 2001;44:3074.
    • (2001) J Med Chem , vol.44 , pp. 3074
    • Hanessian, S.1    MacKay, D.B.2    Moitessier, N.3
  • 49
    • 34548308376 scopus 로고    scopus 로고
    • Kerwin SM. Computer Software Review: eHiTS 5.1.6, SimBioSys Inc. J Am Chem Soc 2005;127:8899-8900.
    • Kerwin SM. Computer Software Review: eHiTS 5.1.6, SimBioSys Inc. J Am Chem Soc 2005;127:8899-8900.
  • 50
  • 51
    • 0035957528 scopus 로고    scopus 로고
    • FlexE: Efficient molecular docking considering protein structure variations
    • Claußen H, Buning C, Rarey M, Lengauer T. FlexE: efficient molecular docking considering protein structure variations. J Mol Biol 2001;308:377-395.
    • (2001) J Mol Biol , vol.308 , pp. 377-395
    • Claußen, H.1    Buning, C.2    Rarey, M.3    Lengauer, T.4
  • 52
    • 0036137713 scopus 로고    scopus 로고
    • Automated docking to multiple target structures: Incorporation of protein mobility and structural water heterogeneity in autodock
    • Österberg F, Morris GM, Sanner MF, Olson AJ, Goodsell DS. Automated docking to multiple target structures: incorporation of protein mobility and structural water heterogeneity in autodock. Proteins 2002;46:34-40.
    • (2002) Proteins , vol.46 , pp. 34-40
    • Österberg, F.1    Morris, G.M.2    Sanner, M.F.3    Olson, A.J.4    Goodsell, D.S.5
  • 53
    • 33749266178 scopus 로고    scopus 로고
    • A method for induced-fit docking, scoring, and ranking of flexible ligands. Application to peptidic and pseudopeptidic β-secretase (BACE 1) inhibitors
    • Moitessier N, Therrien E, Hanessian S. A method for induced-fit docking, scoring, and ranking of flexible ligands. Application to peptidic and pseudopeptidic β-secretase (BACE 1) inhibitors. J Med Chem 2006;49:5885-5894.
    • (2006) J Med Chem , vol.49 , pp. 5885-5894
    • Moitessier, N.1    Therrien, E.2    Hanessian, S.3
  • 54
    • 34548331058 scopus 로고    scopus 로고
    • Glide. 3.5. Portland, OR: Schrödinger, LLC; 2004.
    • Glide. 3.5. Portland, OR: Schrödinger, LLC; 2004.
  • 56
    • 0031226772 scopus 로고    scopus 로고
    • Empirical scoring functions. I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes
    • Eldridge MD, Murray CW, Auton TR, Paolini GV, Mee RP. Empirical scoring functions. I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes. J Comput Aided Mol Des 1997;11:425-445.
    • (1997) J Comput Aided Mol Des , vol.11 , pp. 425-445
    • Eldridge, M.D.1    Murray, C.W.2    Auton, T.R.3    Paolini, G.V.4    Mee, R.P.5
  • 57
    • 34548360438 scopus 로고    scopus 로고
    • FlexX. 1.13. Sankt Augustin, Germany: BioSolveIT; 2003.
    • FlexX. 1.13. Sankt Augustin, Germany: BioSolveIT; 2003.
  • 58
    • 0032738842 scopus 로고    scopus 로고
    • Evaluation of the FlexX incremental construction algorithm for protein-ligand docking
    • Kramer B, Rarey M, Lengauer T. Evaluation of the FlexX incremental construction algorithm for protein-ligand docking. Proteins 1999; 37:228-241.
    • (1999) Proteins , vol.37 , pp. 228-241
    • Kramer, B.1    Rarey, M.2    Lengauer, T.3
  • 59
    • 0031181870 scopus 로고    scopus 로고
    • Multiple automatic base selection: Protein-ligand docking based on incremental construction without manual intervention
    • Rarey M, Kramer B, Lengauer T. Multiple automatic base selection: protein-ligand docking based on incremental construction without manual intervention. J Comput Aided Mol Des 1997;11:369-384.
    • (1997) J Comput Aided Mol Des , vol.11 , pp. 369-384
    • Rarey, M.1    Kramer, B.2    Lengauer, T.3
  • 61
    • 34548315665 scopus 로고    scopus 로고
    • AutoDock. 3.0. La Jolla, CA: The Scripps Research Institute; 1998.
    • AutoDock. 3.0. La Jolla, CA: The Scripps Research Institute; 1998.
  • 62
    • 34548313621 scopus 로고    scopus 로고
    • accessed Jan 25, 2007
    • AutoDock 4 beta release. http://autodock.scripps.edu/news_files/ autodock-4-beta-release (accessed Jan 25, 2007).
    • AutoDock 4 beta release
  • 63
    • 34548329016 scopus 로고    scopus 로고
    • GOLD. 3.0. Cambridge, UK: CCDC; 2005.
    • GOLD. 3.0. Cambridge, UK: CCDC; 2005.
  • 64
    • 34548316511 scopus 로고    scopus 로고
    • eHiTS. 5.1. Toronto, ON, Canada: SimBioSys; 2005.
    • eHiTS. 5.1. Toronto, ON, Canada: SimBioSys; 2005.
  • 65
    • 34548323776 scopus 로고    scopus 로고
    • For more information see:, accessed Jan 25, 2007
    • For more information see: http://www.simbiosys.ca/ehits/ehits_ newfeatures.html (accessed Jan 25, 2007).
  • 66
    • 0000615669 scopus 로고
    • Function minimization by conjugate gradients
    • Fletcher R, Reeves CM. Function minimization by conjugate gradients. Comp J 1964;7:149-154.
    • (1964) Comp J , vol.7 , pp. 149-154
    • Fletcher, R.1    Reeves, C.M.2
  • 68
    • 0033545622 scopus 로고    scopus 로고
    • A general and fast scoring function for protein-ligand interactions: A simplified potential approach
    • Muegge I, Martin YC. A general and fast scoring function for protein-ligand interactions: a simplified potential approach. J Med Chem 1999;42:791-804.
    • (1999) J Med Chem , vol.42 , pp. 791-804
    • Muegge, I.1    Martin, Y.C.2
  • 69
    • 33646829509 scopus 로고    scopus 로고
    • The role of the active site Zn in the catalytic mechanism of the GH38 Golgi α-mannosidase II: Implications from neuromycin inhibition
    • Kuntz DA, Liu H, Bols M, Rose DR. The role of the active site Zn in the catalytic mechanism of the GH38 Golgi α-mannosidase II: implications from neuromycin inhibition. Biocatal Biotransform 2006;24:55-61.
    • (2006) Biocatal Biotransform , vol.24 , pp. 55-61
    • Kuntz, D.A.1    Liu, H.2    Bols, M.3    Rose, D.R.4
  • 70
    • 0037763817 scopus 로고    scopus 로고
    • Comparative evaluation of 11 scoring functions for molecular docking
    • Wang R, Lu Y, Wang S. Comparative evaluation of 11 scoring functions for molecular docking. J Med Chem 2003;46:2287-2303.
    • (2003) J Med Chem , vol.46 , pp. 2287-2303
    • Wang, R.1    Lu, Y.2    Wang, S.3
  • 72
    • 33745384959 scopus 로고    scopus 로고
    • Ligand bias of scoring functions in structure-based virtual screening
    • Jacobsson M, Karlen A. Ligand bias of scoring functions in structure-based virtual screening. J Chem Inf Model 2006;46:1334-1343.
    • (2006) J Chem Inf Model , vol.46 , pp. 1334-1343
    • Jacobsson, M.1    Karlen, A.2
  • 73
    • 34548320762 scopus 로고    scopus 로고
    • Picasso S, Chen Y, Vogel P. Glycosidase inhibition by 1,5-dideoxy-1,5-iminooctitols and 1,2,6,7,8-pentahydroxyindolizidines. Carbohydrate Lett 1994;57:1-8.
    • Picasso S, Chen Y, Vogel P. Glycosidase inhibition by 1,5-dideoxy-1,5-iminooctitols and 1,2,6,7,8-pentahydroxyindolizidines. Carbohydrate Lett 1994;57:1-8.
  • 74
    • 0027750880 scopus 로고
    • Amidine, amidrazone, and amidoxime derivatives of monosaccharide aldonolactams: Synthesis and evaluation as glycosidase inhibitors
    • Papandreou G, Tong MK, Ganem B. Amidine, amidrazone, and amidoxime derivatives of monosaccharide aldonolactams: synthesis and evaluation as glycosidase inhibitors. J Am Chem Soc 1993;115:11682-11690.
    • (1993) J Am Chem Soc , vol.115 , pp. 11682-11690
    • Papandreou, G.1    Tong, M.K.2    Ganem, B.3
  • 75
    • 0033118186 scopus 로고    scopus 로고
    • Davis BG, Brandstetter TW, Hackett L, Winchester BG, Nash RJ, Watson AA, Griffiths RC, Smith C, Fleet GWJ. Tetrazoles of manno- and rhamno-pyranoses: contrasting inhibition of mannosidases by [4.3.0] but of rhamnosidase by [3.3.0] bicyclic tetrazoles. Tetrahedron 1999;55:4489-4500.
    • Davis BG, Brandstetter TW, Hackett L, Winchester BG, Nash RJ, Watson AA, Griffiths RC, Smith C, Fleet GWJ. Tetrazoles of manno- and rhamno-pyranoses: contrasting inhibition of mannosidases by [4.3.0] but of rhamnosidase by [3.3.0] bicyclic tetrazoles. Tetrahedron 1999;55:4489-4500.
  • 76
    • 0028962428 scopus 로고
    • Syntheses and glycosidase inhibiting activities of nagstatin analogs [2]
    • Tatsuta K, Mijura S, Ohta S, Gunji I. Syntheses and glycosidase inhibiting activities of nagstatin analogs [2]. J Antibiot 1995;48:286-288.
    • (1995) J Antibiot , vol.48 , pp. 286-288
    • Tatsuta, K.1    Mijura, S.2    Ohta, S.3    Gunji, I.4
  • 77
    • 0022406906 scopus 로고
    • Synthesis of 1,4,6-tri-deoxy-1,4- imino-D-mannitol: A potentα-mannosidase inhibitor
    • Eis MJ, Rule CJ, Wurzburg BA, Ganem B. Synthesis of 1,4,6-tri-deoxy-1,4- imino-D-mannitol: a potentα-mannosidase inhibitor. Tetrahedron Lett 1985;26:5397-5398.
    • (1985) Tetrahedron Lett , vol.26 , pp. 5397-5398
    • Eis, M.J.1    Rule, C.J.2    Wurzburg, B.A.3    Ganem, B.4
  • 78
    • 0032907265 scopus 로고    scopus 로고
    • Deoxyiminoalditols from aldonic acids VI. Preparation of the four stereoisomeric 4-amino-3-hydroxypyrrolidi nes from bromodeoxytetronic acids. Discovery of a new α-mannosidase inhibitor
    • Limberg G, Lundt I, Zavilla J. Deoxyiminoalditols from aldonic acids VI. Preparation of the four stereoisomeric 4-amino-3-hydroxypyrrolidi nes from bromodeoxytetronic acids. Discovery of a new α-mannosidase inhibitor. Synthesis 1999:178-183.
    • (1999) Synthesis , pp. 178-183
    • Limberg, G.1    Lundt, I.2    Zavilla, J.3
  • 80
    • 0034607947 scopus 로고    scopus 로고
    • Sugar-mimic glycosidase inhibitors: Natural occurrence, biological activity and prospects for therapeutic application
    • Asano N, Nash RJ, Molyneux RJ, Fleet GWJ. Sugar-mimic glycosidase inhibitors: natural occurrence, biological activity and prospects for therapeutic application. Tetrahedron: Asymmetry 2000;11:1645-1680.
    • (2000) Tetrahedron: Asymmetry , vol.11 , pp. 1645-1680
    • Asano, N.1    Nash, R.J.2    Molyneux, R.J.3    Fleet, G.W.J.4
  • 81
    • 0001367771 scopus 로고    scopus 로고
    • Inhibitors of carbohydrate-processing enzymes: Design and synthesis of sugar-shaped heterocycles
    • Ganem B. Inhibitors of carbohydrate-processing enzymes: design and synthesis of sugar-shaped heterocycles. Acc Chem Res 1996; 29:340-347.
    • (1996) Acc Chem Res , vol.29 , pp. 340-347
    • Ganem, B.1


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