메뉴 건너뛰기




Volumn 39, Issue 7, 2007, Pages 495-500

Validation of endogenous control genes in human adipose tissue: Relevance to obesity and obesity-associated type 2 diabetes mellitus

Author keywords

Adipose tissue; Housekeeping gene expression; Obesity; Real time PCR; Type 2 diabetes mellitus

Indexed keywords

MESSENGER RNA; RNA 18S;

EID: 34547632749     PISSN: 00185043     EISSN: None     Source Type: Journal    
DOI: 10.1055/s-2007-982502     Document Type: Article
Times cited : (95)

References (58)
  • 1
  • 2
    • 0035823625 scopus 로고    scopus 로고
    • Distinct transcriptional profiles of adipogenesis in vivo and in vitro
    • Soukas A, Socci ND, Saatkamp BD, Novelli S, Friedman JM. Distinct transcriptional profiles of adipogenesis in vivo and in vitro. J Biol Chem 2001; 276: 34167-34174
    • (2001) J Biol Chem , vol.276 , pp. 34167-34174
    • Soukas, A.1    Socci, N.D.2    Saatkamp, B.D.3    Novelli, S.4    Friedman, J.M.5
  • 3
    • 0042330251 scopus 로고    scopus 로고
    • Minireview: The adipocyte - at the crossroads of energy homeostasis, inflammation, and atherosclerosis
    • Rajala MW, Scherer PE. Minireview: the adipocyte - at the crossroads of energy homeostasis, inflammation, and atherosclerosis. Endocrinology 2003; 144: 3765-3773
    • (2003) Endocrinology , vol.144 , pp. 3765-3773
    • Rajala, M.W.1    Scherer, P.E.2
  • 5
    • 0037298988 scopus 로고    scopus 로고
    • Control of body weight: A physiologic and transgenic perspective
    • Frühbeck G, Gómez-Ambrosi J. Control of body weight: a physiologic and transgenic perspective. Diabetologia 2003; 46: 143-172
    • (2003) Diabetologia , vol.46 , pp. 143-172
    • Frühbeck, G.1    Gómez-Ambrosi, J.2
  • 6
    • 0034241837 scopus 로고    scopus 로고
    • Partial genome scale analysis of gene expression in human adipose tissue using DNA array
    • Gabrielsson BL, Carlsson B, Carlsson LM. Partial genome scale analysis of gene expression in human adipose tissue using DNA array. Obes Res 2000; 8: 374-384
    • (2000) Obes Res , vol.8 , pp. 374-384
    • Gabrielsson, B.L.1    Carlsson, B.2    Carlsson, L.M.3
  • 7
    • 1342332142 scopus 로고    scopus 로고
    • Gene expression profile of omental adipose tissue in human obesity
    • Gómez-Ambrosi J, Catalán V, Diez-Caballero A et al. Gene expression profile of omental adipose tissue in human obesity. FASEB J 2004; 18: 215-217
    • (2004) FASEB J , vol.18 , pp. 215-217
    • Gómez-Ambrosi, J.1    Catalán, V.2    Diez-Caballero, A.3
  • 8
    • 0842347854 scopus 로고    scopus 로고
    • Differentially expressed genes in visceral or subcutaneous adipose tissue of obese men and women
    • Linder K, Arner P, Flores-Morales A, Tollet-Egnell P, Norstedt G. Differentially expressed genes in visceral or subcutaneous adipose tissue of obese men and women. J Lipid Res 2004; 45: 148-154
    • (2004) J Lipid Res , vol.45 , pp. 148-154
    • Linder, K.1    Arner, P.2    Flores-Morales, A.3    Tollet-Egnell, P.4    Norstedt, G.5
  • 10
    • 0037129827 scopus 로고    scopus 로고
    • Von, Paepe A De, Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • Vandesompele J, Preter K De, Pattyn F, Poppe B, Roy N Von, Paepe A De, Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 2002; 3: R34
    • (2002) Genome Biol , vol.3
    • Vandesompele, J.1    Preter, K.D.2    Pattyn, F.3    Poppe, B.4    Roy, N.5
  • 12
    • 0033775615 scopus 로고    scopus 로고
    • Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays
    • Bustin SA. Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. J Mol Endocrinol 2000; 25:169-193
    • (2000) J Mol Endocrinol , vol.25 , pp. 169-193
    • SA, B.1
  • 17
    • 19444384574 scopus 로고    scopus 로고
    • TNF-alpha, but not IL-6, stimulates plasminogen activator inhibitor-1 expression in human subcutaneous adipose tissue
    • Plomgaard P, Keller P, Keller C, Pedersen BK. TNF-alpha, but not IL-6, stimulates plasminogen activator inhibitor-1 expression in human subcutaneous adipose tissue. J Appl Physiol 2005; 98: 2019-2023
    • (2005) J Appl Physiol , vol.98 , pp. 2019-2023
    • Plomgaard, P.1    Keller, P.2    Keller, C.3    Pedersen, B.K.4
  • 19
    • 2342530375 scopus 로고    scopus 로고
    • Schoof E, Stuppy A, Harig F, Carbon R, Horbach T, Stohr W, Rascher W, Dotsch J. Comparison of leptin gene expression in different adipose tissues in children and adults. Eur J Endocrinol 2004; 150: 579-584
    • Schoof E, Stuppy A, Harig F, Carbon R, Horbach T, Stohr W, Rascher W, Dotsch J. Comparison of leptin gene expression in different adipose tissues in children and adults. Eur J Endocrinol 2004; 150: 579-584
  • 21
    • 0242413107 scopus 로고    scopus 로고
    • Adipocyte-selective reduction of the leptin receptors induced by antisense RNA leads to increased adiposity, dyslipidemia, and insulin resistance
    • Huan JN, Li J, Han Y, Chen K, Wu N, Zhao AZ. Adipocyte-selective reduction of the leptin receptors induced by antisense RNA leads to increased adiposity, dyslipidemia, and insulin resistance. J Biol Chem 2003; 278: 45638-45650
    • (2003) J Biol Chem , vol.278 , pp. 45638-45650
    • Huan, J.N.1    Li, J.2    Han, Y.3    Chen, K.4    Wu, N.5    Zhao, A.Z.6
  • 26
    • 6344226251 scopus 로고    scopus 로고
    • Effect of carbohydrate overfeeding on whole body macronutrient metabolism and expression of lipogenic enzymes in adipose tissue of lean and overweight humans
    • Minehira K, Vega N, Vidal H, Acheson K, Tappy L. Effect of carbohydrate overfeeding on whole body macronutrient metabolism and expression of lipogenic enzymes in adipose tissue of lean and overweight humans. Int J Obes Relat Metab Disord 2004; 28: 1291-1298
    • (2004) Int J Obes Relat Metab Disord , vol.28 , pp. 1291-1298
    • Minehira, K.1    Vega, N.2    Vidal, H.3    Acheson, K.4    Tappy, L.5
  • 27
    • 3242728272 scopus 로고    scopus 로고
    • Variation in the calpain-10 gene is associated with elevated triglyceride levels and reduced adipose tissue messenger ribonucleic acid expression in obese Swedish subjects
    • Carlsson E, Fredriksson J, Groop L, Ridderstrale M. Variation in the calpain-10 gene is associated with elevated triglyceride levels and reduced adipose tissue messenger ribonucleic acid expression in obese Swedish subjects. J Clin Endocrinol Metab 2004; 89: 3601-3605
    • (2004) J Clin Endocrinol Metab , vol.89 , pp. 3601-3605
    • Carlsson, E.1    Fredriksson, J.2    Groop, L.3    Ridderstrale, M.4
  • 28
    • 18844427583 scopus 로고    scopus 로고
    • Autocrine/paracrine role of inflammation-mediated calcitonin gene-related peptide and adrenomedullin expression in human adipose tissue
    • Linscheid P, Seboek D, Zulewski H, Keller U, Muller B. Autocrine/paracrine role of inflammation-mediated calcitonin gene-related peptide and adrenomedullin expression in human adipose tissue. Endocrinology 2005; 146: 2699-2708
    • (2005) Endocrinology , vol.146 , pp. 2699-2708
    • Linscheid, P.1    Seboek, D.2    Zulewski, H.3    Keller, U.4    Muller, B.5
  • 29
    • 0037423717 scopus 로고    scopus 로고
    • Reduced expression of PGC-1 and insulin-signaling molecules in adipose tissue is associated with insulin resistance
    • Hammarstedt A, Jansson PA, Wesslau C, Yang X, Smith U. Reduced expression of PGC-1 and insulin-signaling molecules in adipose tissue is associated with insulin resistance. Biochem Biophys Res Commun 2003; 301: 578-582
    • (2003) Biochem Biophys Res Commun , vol.301 , pp. 578-582
    • Hammarstedt, A.1    Jansson, P.A.2    Wesslau, C.3    Yang, X.4    Smith, U.5
  • 31
    • 0038692185 scopus 로고    scopus 로고
    • Expression of peroxisome proliferator-activated receptor-gamma1 and peroxisome proliferator-activated receptor-gamma2 in visceral and subcutaneous adipose tissue of obese women
    • Giusti V, Verdumo C, Suter M, Gaillard RC, Burckhardt P, Prolong F. Expression of peroxisome proliferator-activated receptor-gamma1 and peroxisome proliferator-activated receptor-gamma2 in visceral and subcutaneous adipose tissue of obese women. Diabetes 2003; 52: 1673-1676
    • (2003) Diabetes , vol.52 , pp. 1673-1676
    • Giusti, V.1    Verdumo, C.2    Suter, M.3    Gaillard, R.C.4    Burckhardt, P.5    Prolong, F.6
  • 33
    • 0036130355 scopus 로고    scopus 로고
    • Quantitative analysis of beta-actin, beta-2-microglobulin and porphobilinogen deaminase mRNA and their comparison as control transcripts for RT-PCR
    • Lupberger J, Kreuzer KA, Baskaynak G, Peters UR, Coutre P le Schmidt CA. Quantitative analysis of beta-actin, beta-2-microglobulin and porphobilinogen deaminase mRNA and their comparison as control transcripts for RT-PCR. Mol Cell Probes 2002; 16: 25-30
    • (2002) Mol Cell Probes , vol.16 , pp. 25-30
    • Lupberger, J.1    Kreuzer, K.A.2    Baskaynak, G.3    Peters, U.R.4    Coutre, P.5    le Schmidt, C.A.6
  • 34
    • 0034720002 scopus 로고    scopus 로고
    • Comparison of human adult and fetal expression and identification of 535 housekeeping/ maintenance genes
    • Warrington JA, Nair A, Mahadevappa M, Tsyganskaya M. Comparison of human adult and fetal expression and identification of 535 housekeeping/ maintenance genes. Physiol Genomics 2000; 2: 143-147
    • (2000) Physiol Genomics , vol.2 , pp. 143-147
    • Warrington, J.A.1    Nair, A.2    Mahadevappa, M.3    Tsyganskaya, M.4
  • 36
    • 0036668567 scopus 로고    scopus 로고
    • Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): Trends and problems
    • Bustin SA. Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems. J Mol Endocrinol 2002; 29: 23-39
    • (2002) J Mol Endocrinol , vol.29 , pp. 23-39
    • SA, B.1
  • 38
    • 0037109753 scopus 로고    scopus 로고
    • Tricarico C, Pinzani P, Bianchi S, Paglierani M, Distante V, Pazzagli M, Bustin SA, Orlando C. Quantitative real-time reverse transcription polymerase chain reaction: normalization to rRNA or single housekeeping genes is inappropriate for human tissue biopsies. Anal Biochem 2002; 309: 293-300
    • Tricarico C, Pinzani P, Bianchi S, Paglierani M, Distante V, Pazzagli M, Bustin SA, Orlando C. Quantitative real-time reverse transcription polymerase chain reaction: normalization to rRNA or single housekeeping genes is inappropriate for human tissue biopsies. Anal Biochem 2002; 309: 293-300
  • 40
    • 1642375634 scopus 로고    scopus 로고
    • Molecular determinants of human adipose tissue: Differences between visceral and subcutaneous compartments in obese women
    • Giusti V, Suter M, Verdumo C, Gaillard RC, Burckhardt P, Prolong FP. Molecular determinants of human adipose tissue: differences between visceral and subcutaneous compartments in obese women. J Clin Endocrinol Metab 2004; 89: 1379-1384
    • (2004) J Clin Endocrinol Metab , vol.89 , pp. 1379-1384
    • Giusti, V.1    Suter, M.2    Verdumo, C.3    Gaillard, R.C.4    Burckhardt, P.5    Prolong, F.P.6
  • 42
    • 0034909383 scopus 로고    scopus 로고
    • Precision of measurement and body size in whole-body air-displacement plethysmography
    • Wells JC, Fuller NJ. Precision of measurement and body size in whole-body air-displacement plethysmography. Int J Obes Relat Metab Disord 2001; 25: 1161-1167
    • (2001) Int J Obes Relat Metab Disord , vol.25 , pp. 1161-1167
    • Wells, J.C.1    Fuller, N.J.2
  • 43
    • 21244499405 scopus 로고    scopus 로고
    • GAPDH as a housekeeping gene: Analysis of GAPDH mRNA expression in a panel of 72 human tissues
    • Barber RD, Harmer DW, Coleman RA, Clark BJ. GAPDH as a housekeeping gene: analysis of GAPDH mRNA expression in a panel of 72 human tissues. Physiol Genomics 2005; 21: 389-395
    • (2005) Physiol Genomics , vol.21 , pp. 389-395
    • Barber, R.D.1    Harmer, D.W.2    Coleman, R.A.3    Clark, B.J.4
  • 44
    • 0034038973 scopus 로고    scopus 로고
    • Harmelen V van, Elizalde M, Ariapart P, Bergstedt-Lindqvist S, Reynisdottir S, Hoffstedt J, Lundkvist I, Bringman S, Arner P. The association of human adipose angiotensinogen gene expression with abdominal fat distribution in obesity. Int J Obes Relat Metab Disord 2000; 24: 673-678
    • Harmelen V van, Elizalde M, Ariapart P, Bergstedt-Lindqvist S, Reynisdottir S, Hoffstedt J, Lundkvist I, Bringman S, Arner P. The association of human adipose angiotensinogen gene expression with abdominal fat distribution in obesity. Int J Obes Relat Metab Disord 2000; 24: 673-678
  • 47
    • 0035161457 scopus 로고    scopus 로고
    • Unsuitability of using ribosomal RNA as loading control for Northern blot analyses related to the imbalance between messenger and ribosomal RNA content in rat mammary tumors
    • Solanas M, Moral R, Escrich E. Unsuitability of using ribosomal RNA as loading control for Northern blot analyses related to the imbalance between messenger and ribosomal RNA content in rat mammary tumors. Anal Biochem 2001; 288: 99-102
    • (2001) Anal Biochem , vol.288 , pp. 99-102
    • Solanas, M.1    Moral, R.2    Escrich, E.3
  • 49
    • 0028815382 scopus 로고
    • Evidence of increased glyceraldehyde-3-phosphate dehydrogenase and fatty acid synthetase promoter activities in transiently transfected adipocytes from genetically obese rats
    • Rolland V, Dugail I, Liepvre X Le, Lavau M. Evidence of increased glyceraldehyde-3-phosphate dehydrogenase and fatty acid synthetase promoter activities in transiently transfected adipocytes from genetically obese rats. J Biol Chem 1995; 270: 1102-1106
    • (1995) J Biol Chem , vol.270 , pp. 1102-1106
    • Rolland, V.1    Dugail, I.2    Liepvre, X.L.3    Lavau, M.4
  • 50
    • 0032799325 scopus 로고    scopus 로고
    • Norepinephrine, tri-iodothyronine and insulin upregulate glyceraldehyde-3-phosphate dehydrogenase mRNA during Brown adipocyte differentiation
    • Barroso I, Benito B, Garci-Jimenez C, Hernandez A, Obregon MJ, Santisteban P. Norepinephrine, tri-iodothyronine and insulin upregulate glyceraldehyde-3-phosphate dehydrogenase mRNA during Brown adipocyte differentiation. Eur J Endocrinol 1999; 141: 169-179
    • (1999) Eur J Endocrinol , vol.141 , pp. 169-179
    • Barroso, I.1    Benito, B.2    Garci-Jimenez, C.3    Hernandez, A.4    Obregon, M.J.5    Santisteban, P.6
  • 51
    • 0034816222 scopus 로고    scopus 로고
    • Fudenine, a C-terminal truncated rat homologue of mouse prominin, is blood glucose-regulated and can up-regulate the expression of GAPDH
    • Zhu G, Chang Y, Zuo J, Dong X, Zhang M, Hu G, Fang F. Fudenine, a C-terminal truncated rat homologue of mouse prominin, is blood glucose-regulated and can up-regulate the expression of GAPDH. Biochem Biophys Res Commun 2001; 281: 951-956
    • (2001) Biochem Biophys Res Commun , vol.281 , pp. 951-956
    • Zhu, G.1    Chang, Y.2    Zuo, J.3    Dong, X.4    Zhang, M.5    Hu, G.6    Fang, F.7
  • 52
    • 0033575003 scopus 로고    scopus 로고
    • Direct comparison of GAPDH, beta-actin, cyclophilin, and 28S rRNA as internal standards for quantifying RNA levels under hypoxia
    • Zhong H, Simons JW. Direct comparison of GAPDH, beta-actin, cyclophilin, and 28S rRNA as internal standards for quantifying RNA levels under hypoxia. Biochem Biophys Res Commun 1999; 259: 523-526
    • (1999) Biochem Biophys Res Commun , vol.259 , pp. 523-526
    • Zhong, H.1    Simons, J.W.2
  • 53
    • 0034091196 scopus 로고    scopus 로고
    • A reliability test of standard-based quantitative PCR: Exogenous vs endogenous standards
    • Ke LD, Chen Z, Yung WK. A reliability test of standard-based quantitative PCR: exogenous vs endogenous standards. Mol Cell Probes 2000; 14: 127-135
    • (2000) Mol Cell Probes , vol.14 , pp. 127-135
    • Ke, L.D.1    Chen, Z.2    Yung, W.K.3
  • 55
    • 0025453065 scopus 로고
    • An insulin response element in the glyceraldehyde-3-phosphate dehydrogenase gene binds a nuclear protein induced by insulin in cultured cells and by nutritional manipulations in vivo
    • Nasrin N, Ercolani L, Denaro M, Kong XF, Kang I, Alexander M. An insulin response element in the glyceraldehyde-3-phosphate dehydrogenase gene binds a nuclear protein induced by insulin in cultured cells and by nutritional manipulations in vivo. Proc Natl Acad Sci USA 1990; 87: 5273-5277
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 5273-5277
    • Nasrin, N.1    Ercolani, L.2    Denaro, M.3    Kong, X.F.4    Kang, I.5    Alexander, M.6
  • 56
    • 0011918483 scopus 로고
    • Insulin stimulates glyceraldehyde-3-phosphate dehydrogenase gene expression through cis-acting DNA sequences
    • Alexander MC, Lomanto M, Nasrin N, Ramaika C. Insulin stimulates glyceraldehyde-3-phosphate dehydrogenase gene expression through cis-acting DNA sequences. Proc Natl Acad Sci USA 1988; 85: 5092-5096
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 5092-5096
    • Alexander, M.C.1    Lomanto, M.2    Nasrin, N.3    Ramaika, C.4
  • 57
    • 0024076259 scopus 로고
    • Adipose-tissue-specific increase in glyceraldehyde-3-phosphate dehydrogenase activity and mRNA amounts in suckling pre-obese Zucker rats. Effect of weaning
    • Dugail I, Quignard-Boulange A, Bazin R, Liepvre X Le, Lavau M. Adipose-tissue-specific increase in glyceraldehyde-3-phosphate dehydrogenase activity and mRNA amounts in suckling pre-obese Zucker rats. Effect of weaning. Biochem J 1988; 254: 483-487
    • (1988) Biochem J , vol.254 , pp. 483-487
    • Dugail, I.1    Quignard-Boulange, A.2    Bazin, R.3    Liepvre, X.L.4    Lavau, M.5
  • 58
    • 0034750903 scopus 로고    scopus 로고
    • Validation of endogenous controls for gene expression studies in human adipocytes and preadipocytes
    • Gorzelniak K, Janke J, Engeli S, Sharma AM. Validation of endogenous controls for gene expression studies in human adipocytes and preadipocytes. Horm Metab Res 2001; 33: 625-627
    • (2001) Horm Metab Res , vol.33 , pp. 625-627
    • Gorzelniak, K.1    Janke, J.2    Engeli, S.3    Sharma, A.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.