-
1
-
-
0037093645
-
Dissecting protein-protein recognition sites
-
Chakrabarti, P.; Janin, J. Dissecting protein-protein recognition sites. Proteins 2002, 47, 334-343.
-
(2002)
Proteins
, vol.47
, pp. 334-343
-
-
Chakrabarti, P.1
Janin, J.2
-
2
-
-
0035342450
-
Residue frequencies and pairing preferences at protein-protein interfaces
-
Glaser, F.; Steinberg, D. M.; Vakser, I. A.; Ben-Tal, N. Residue frequencies and pairing preferences at protein-protein interfaces. Proteins 2001, 43, 89-102.
-
(2001)
Proteins
, vol.43
, pp. 89-102
-
-
Glaser, F.1
Steinberg, D.M.2
Vakser, I.A.3
Ben-Tal, N.4
-
3
-
-
0037229456
-
Analyzing six types of protein-protein interfaces
-
Ofran, Y.; Rost, B. Analyzing six types of protein-protein interfaces. J. Mol. Biol. 2003, 325, 377-387.
-
(2003)
J. Mol. Biol
, vol.325
, pp. 377-387
-
-
Ofran, Y.1
Rost, B.2
-
4
-
-
0038187615
-
A protein-protein docking benchmark
-
Chen, R.; Mintseris, J.; Janin, J.; Weng, Z. A protein-protein docking benchmark. Proteins 2003, 52, 88-91.
-
(2003)
Proteins
, vol.52
, pp. 88-91
-
-
Chen, R.1
Mintseris, J.2
Janin, J.3
Weng, Z.4
-
5
-
-
0025123333
-
The structure of protein-protein recognition sites
-
Janin, J.; Chothia, C. The structure of protein-protein recognition sites. J. Biol. Chem. 1990, 265, 16027-16030.
-
(1990)
J. Biol. Chem
, vol.265
, pp. 16027-16030
-
-
Janin, J.1
Chothia, C.2
-
6
-
-
0028607523
-
Cavities and packing at protein interfaces
-
Hubbard, S. J.; Argos, P. Cavities and packing at protein interfaces. Protein Sci. 1994, 3, 2194-2206.
-
(1994)
Protein Sci
, vol.3
, pp. 2194-2206
-
-
Hubbard, S.J.1
Argos, P.2
-
7
-
-
0031565729
-
Analysis of protein-protein interaction sites using surface patches
-
Jones, S.; Thornton, J. M. Analysis of protein-protein interaction sites using surface patches. J. Mol. Biol. 1997, 272, 121-132.
-
(1997)
J. Mol. Biol
, vol.272
, pp. 121-132
-
-
Jones, S.1
Thornton, J.M.2
-
8
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
Lo Conte, L.; Chothia, C.; Janin, J. The atomic structure of protein-protein recognition sites. J. Mol. Biol. 1999, 285, 2177-2198.
-
(1999)
J. Mol. Biol
, vol.285
, pp. 2177-2198
-
-
Lo Conte, L.1
Chothia, C.2
Janin, J.3
-
9
-
-
1042275583
-
A dissection of specific and non-specific protein-protein interfaces
-
Bahadur, R. P.; Chakrabarti, P.; Rodier, F.; Janin, J. A dissection of specific and non-specific protein-protein interfaces. J. Mol. Biol. 2004, 336, 943-955.
-
(2004)
J. Mol. Biol
, vol.336
, pp. 943-955
-
-
Bahadur, R.P.1
Chakrabarti, P.2
Rodier, F.3
Janin, J.4
-
10
-
-
0037474541
-
Structural characterization and functional significance of transient protein-protein interactions
-
Nooren, I. M. A.; Thornton, J. M. Structural characterization and functional significance of transient protein-protein interactions. J. Mol. Biol 2003, 325, 981-1018.
-
(2003)
J. Mol. Biol
, vol.325
, pp. 981-1018
-
-
Nooren, I.M.A.1
Thornton, J.M.2
-
12
-
-
1842405464
-
Studies of protein-protein interfaces: A statistical analysis of the hydrophobic effect
-
Tsai, C.-J.; Lin, S. L.; Wolfson, H. J.; Nussinov, R. Studies of protein-protein interfaces: a statistical analysis of the hydrophobic effect. Protein Sci. 1997, 6, 53-64.
-
(1997)
Protein Sci
, vol.6
, pp. 53-64
-
-
Tsai, C.-J.1
Lin, S.L.2
Wolfson, H.J.3
Nussinov, R.4
-
13
-
-
0031450506
-
Hydrogen bonds and salt bridges across protein-protein interfaces
-
Xu, D.; Tsai, C. J.; Nussinov, R. Hydrogen bonds and salt bridges across protein-protein interfaces. Protein Eng. 1997, 10, 999-1012.
-
(1997)
Protein Eng
, vol.10
, pp. 999-1012
-
-
Xu, D.1
Tsai, C.J.2
Nussinov, R.3
-
14
-
-
19544372768
-
Hydration of protein-protein interfaces
-
Rodier, F.; Bahadur, R. P.; Chakrabarti, P.; Janin, J. Hydration of protein-protein interfaces. Proteins 2005, 60, 36-45.
-
(2005)
Proteins
, vol.60
, pp. 36-45
-
-
Rodier, F.1
Bahadur, R.P.2
Chakrabarti, P.3
Janin, J.4
-
15
-
-
0037609791
-
Protein-protein interactions: Structurally conserved residues distinguish between binding sites and exposed protein surfaces
-
Ma, B.; Elkayam, T. W. H.; Nussinov, R. Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 5772-5777.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A
, vol.100
, pp. 5772-5777
-
-
Ma, B.1
Elkayam, T.W.H.2
Nussinov, R.3
-
16
-
-
0029150296
-
Texture mapping parametric molecular surfaces
-
Duncan, B. S.; Olson, A. J. Texture mapping parametric molecular surfaces. Mol. Graphics 1995, 13, 258-264.
-
(1995)
Mol. Graphics
, vol.13
, pp. 258-264
-
-
Duncan, B.S.1
Olson, A.J.2
-
17
-
-
0029488073
-
Defining, computing, and visualizing molecular interfaces
-
Varshney, A. F. P.; Brooks, J.; Richardson, D. C.; Wright, W. V.; Manocha, D. Defining, computing, and visualizing molecular interfaces. Proc. IEEE Visualization 1995, 36-43.
-
(1995)
Proc. IEEE Visualization
, pp. 36-43
-
-
Varshney, A.F.P.1
Brooks, J.2
Richardson, D.C.3
Wright, W.V.4
Manocha, D.5
-
18
-
-
0033613812
-
Visualizing and quantifying molecular goodness-of-fit: Small-probe contact dots with explicit hydrogen atoms
-
Word, J. M.; Lovell, S. C.; LaBean, T. H.; Taylor, H. C.; Zalias, M. E.; Presley, B. K.; Richardson, J. S.; Richardson, D. C. Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms. J. Mol. Biol. 1999, 285, 1711-1733.
-
(1999)
J. Mol. Biol
, vol.285
, pp. 1711-1733
-
-
Word, J.M.1
Lovell, S.C.2
LaBean, T.H.3
Taylor, H.C.4
Zalias, M.E.5
Presley, B.K.6
Richardson, J.S.7
Richardson, D.C.8
-
19
-
-
1842526090
-
-
Neuvirth, H.; Raz, R.; Schreiber, G. ProMate: A structure based prediction program to identify the location of protein-protein binding sites. J. Mol. Biol. 2004, 338, 181-199.
-
Neuvirth, H.; Raz, R.; Schreiber, G. ProMate: A structure based prediction program to identify the location of protein-protein binding sites. J. Mol. Biol. 2004, 338, 181-199.
-
-
-
-
20
-
-
24344487344
-
Generation and analysis of a protein-protein Interface data set with similar chemical and spatial patterns of interactions
-
Mintz, S.; Shulman-Peleg, A.; Wolfson, H. J.; Nussinov, R. Generation and analysis of a protein-protein Interface data set with similar chemical and spatial patterns of interactions. Proteins 2005, 61, 6-20.
-
(2005)
Proteins
, vol.61
, pp. 6-20
-
-
Mintz, S.1
Shulman-Peleg, A.2
Wolfson, H.J.3
Nussinov, R.4
-
21
-
-
33746828615
-
Interface surfaces for protein-protein complexes
-
Mach
-
Ban, Y. E.; Edelsbrunner, H.; Rudolph, J. Interface surfaces for protein-protein complexes. J. Assoc. Comput. Mach. 2006, 53 (3), 361-378.
-
(2006)
J. Assoc. Comput
, vol.53
, Issue.3
, pp. 361-378
-
-
Ban, Y.E.1
Edelsbrunner, H.2
Rudolph, J.3
-
22
-
-
1842595135
-
A novel method for scoring of docked protein complexes using predicted protein-protein binding sites
-
Gottschalk, K.-E.; Neuvirth, H.; Schreiber, G. A novel method for scoring of docked protein complexes using predicted protein-protein binding sites. Protein Eng. Des. Sel. 2004, 17 (2), 183-189.
-
(2004)
Protein Eng. Des. Sel
, vol.17
, Issue.2
, pp. 183-189
-
-
Gottschalk, K.-E.1
Neuvirth, H.2
Schreiber, G.3
-
25
-
-
0000732609
-
GRASP: Graphical representation and analysis of surface properties
-
Nicholls, A. J. GRASP: graphical representation and analysis of surface properties. Biophys. J. 1993, 64, A116.
-
(1993)
Biophys. J
, vol.64
-
-
Nicholls, A.J.1
-
26
-
-
0030404063
-
Analytically defined surfaces to analyze molecular interaction properties
-
Gabdoulline, R. R.; Wade, R. C. Analytically defined surfaces to analyze molecular interaction properties. J. Mol. Graphics 1996, 14, 341-353.
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 341-353
-
-
Gabdoulline, R.R.1
Wade, R.C.2
-
28
-
-
0023657725
-
Stability studies of derivatives of the bovine pancreatic trypsin inhibitor
-
Schwarz, H.; Hinz, H.; Mehlich, A.; Tschesche, H.; Wenzel, H. Stability studies of derivatives of the bovine pancreatic trypsin inhibitor. Biochemistry 1987, 26 (12), 3544-3551.
-
(1987)
Biochemistry
, vol.26
, Issue.12
, pp. 3544-3551
-
-
Schwarz, H.1
Hinz, H.2
Mehlich, A.3
Tschesche, H.4
Wenzel, H.5
-
29
-
-
0347297568
-
Screening for stable mutants with amino acid pairs substituted for the disulfide between residues 14 and 38 of bovine pancreatic trypsin inhibitor (BPTI)
-
Hagihara, Y.; Shiraki, K.; Nakamura, T.; Uegaki, K.; Takagi, M.; Imanaka, T.; Yumoto, N. Screening for stable mutants with amino acid pairs substituted for the disulfide between residues 14 and 38 of bovine pancreatic trypsin inhibitor (BPTI). J. Biol. Chem. 2002, 277 (52), 51043-51048.
-
(2002)
J. Biol. Chem
, vol.277
, Issue.52
, pp. 51043-51048
-
-
Hagihara, Y.1
Shiraki, K.2
Nakamura, T.3
Uegaki, K.4
Takagi, M.5
Imanaka, T.6
Yumoto, N.7
-
30
-
-
0024988340
-
Atomic structure of the actin:DNase I complex
-
Kabsch, W.; Mannherz, H. G.; Suck, D.; Pai, E. F.; Holmes, K. C. Atomic structure of the actin:DNase I complex. Nature 1990, 347, 37-44.
-
(1990)
Nature
, vol.347
, pp. 37-44
-
-
Kabsch, W.1
Mannherz, H.G.2
Suck, D.3
Pai, E.F.4
Holmes, K.C.5
-
31
-
-
0026530977
-
Natural protein proteinase inhibitors and their interaction with proteinases
-
Bode, W.; Huber, R. Natural protein proteinase inhibitors and their interaction with proteinases. Eur. J. Biochem. 1992, 204 (2), 433-451.
-
(1992)
Eur. J. Biochem
, vol.204
, Issue.2
, pp. 433-451
-
-
Bode, W.1
Huber, R.2
-
32
-
-
0030959346
-
The thrombin E192Q-BPTI complex reveals gross structural rearrangements: Implications for the interaction with antithrombin and thombomodulin
-
van de Locht, A.; Bode, W.; Huber, R.; Le Bonniec, B. F.; Stone, S. R.; Esmon, C. T.; Stubbs, M. T. The thrombin E192Q-BPTI complex reveals gross structural rearrangements: implications for the interaction with antithrombin and thombomodulin. EMBO J. 1997, 16 (11), 2977-2984.
-
(1997)
EMBO J
, vol.16
, Issue.11
, pp. 2977-2984
-
-
van de Locht, A.1
Bode, W.2
Huber, R.3
Le Bonniec, B.F.4
Stone, S.R.5
Esmon, C.T.6
Stubbs, M.T.7
-
33
-
-
0029873697
-
Rapid, electrostatically assisted association of proteins
-
Schreiber, G.; Fersht, A. R. Rapid, electrostatically assisted association of proteins. Nat. Struct. Biol. 1996, 3 (5), 427-431.
-
(1996)
Nat. Struct. Biol
, vol.3
, Issue.5
, pp. 427-431
-
-
Schreiber, G.1
Fersht, A.R.2
-
34
-
-
15944411795
-
Coarse and reliable geometric alignment for protein docking
-
Wang, Y.; Agarwal, P. K.; Brown, P.; Edelsbrunner, H.; Rudolph, J. Coarse and reliable geometric alignment for protein docking. Proc. Pac. Symp. Biocomput. 2005, 64-75.
-
(2005)
Proc. Pac. Symp. Biocomput
, pp. 64-75
-
-
Wang, Y.1
Agarwal, P.K.2
Brown, P.3
Edelsbrunner, H.4
Rudolph, J.5
-
35
-
-
0038161052
-
Protein-protein docking with simultaneous optimization of Rigid-body Displacement and Side-chain conformations
-
Gray, J. J.; Moughon, S.; Wang, C.; Schueler-Furman, O.; Kuhlman, B.; Rohl, C. A.; Baker, D. Protein-protein docking with simultaneous optimization of Rigid-body Displacement and Side-chain conformations. J. Mol. Biol. 2003, 331, 281-299.
-
(2003)
J. Mol. Biol
, vol.331
, pp. 281-299
-
-
Gray, J.J.1
Moughon, S.2
Wang, C.3
Schueler-Furman, O.4
Kuhlman, B.5
Rohl, C.A.6
Baker, D.7
|