-
1
-
-
0023677325
-
Binding of the bovine pancreatic trypsin inhibitor (Kunitz) to human α-, β- and γ-thrombin; a kinetic and thermodynamic study
-
Ascenzi, P., Coletta, M., Amiconi, G., De Cristofaro, R., Bolognesi, M., Guarneri, M. and Menegatti, E. (1988) Binding of the bovine pancreatic trypsin inhibitor (Kunitz) to human α-, β- and γ-thrombin; a kinetic and thermodynamic study. Biochim. Biophys. Acta, 956, 156-161.
-
(1988)
Biochim. Biophys. Acta
, vol.956
, pp. 156-161
-
-
Ascenzi, P.1
Coletta, M.2
Amiconi, G.3
De Cristofaro, R.4
Bolognesi, M.5
Guarneri, M.6
Menegatti, E.7
-
2
-
-
0028868962
-
Thermodynamic investigation of hirudin binding to the slow and fast forms of thrombin: Evidence for folding transitions in the inhibitor and protease coupled to binding
-
Ayala, Y.M., Vindigi, A., Nayal, M., Spolar, R.S., Record, M.T., Jr and Di Cera, E. (1995) Thermodynamic investigation of hirudin binding to the slow and fast forms of thrombin: Evidence for folding transitions in the inhibitor and protease coupled to binding. J. Mol. Biol., 253, 787-798.
-
(1995)
J. Mol. Biol.
, vol.253
, pp. 787-798
-
-
Ayala, Y.M.1
Vindigi, A.2
Nayal, M.3
Spolar, R.S.4
Record Jr., M.T.5
Di Cera, E.6
-
3
-
-
0024457599
-
Binding of thrombin to subendothelial extracellular matrix: Protection and expression of functional properties
-
Bar-Shavit, R., Eldor, A. and Vlodavsky, I. (1989) Binding of thrombin to subendothelial extracellular matrix: Protection and expression of functional properties. J. Clin. Invest., 84, 1096-1104.
-
(1989)
J. Clin. Invest.
, vol.84
, pp. 1096-1104
-
-
Bar-Shavit, R.1
Eldor, A.2
Vlodavsky, I.3
-
4
-
-
0026530977
-
Natural protein proteinase inhibitors and their interaction with proteinases
-
Bode, W. and Huber, R. (1992) Natural protein proteinase inhibitors and their interaction with proteinases. Eur. J. Biochem., 204, 433-451.
-
(1992)
Eur. J. Biochem.
, vol.204
, pp. 433-451
-
-
Bode, W.1
Huber, R.2
-
5
-
-
0024431034
-
The refined 1.9 Å crystal structure of human α-thrombin: Interaction with D-Phe-Pro-Arg chloromethylketone and significance of the Tyr-Pro-Pro-Trp insertion segment
-
Bode, W., Mayr, I., Baumann, U., Huber, R., Stone, S.R. and Hofsteenge, J. (1989) The refined 1.9 Å crystal structure of human α-thrombin: Interaction with D-Phe-Pro-Arg chloromethylketone and significance of the Tyr-Pro-Pro-Trp insertion segment. EMBO J., 8, 3467-3475.
-
(1989)
EMBO J.
, vol.8
, pp. 3467-3475
-
-
Bode, W.1
Mayr, I.2
Baumann, U.3
Huber, R.4
Stone, S.R.5
Hofsteenge, J.6
-
6
-
-
0027050807
-
The refined 1.9 Å X-ray crystal structure of D-PheProArg chloromethylketone inhibited human α-thrombin. Structure analysis, overall structure, electrostatic properties, detailed active site geometry, structure-function relationships
-
Bode, W., Turk, D. and Karshikoy, A. (1992) The refined 1.9 Å X-ray crystal structure of D-PheProArg chloromethylketone inhibited human α-thrombin. Structure analysis, overall structure, electrostatic properties, detailed active site geometry, structure-function relationships. Protein Sci., 1, 426-471.
-
(1992)
Protein Sci.
, vol.1
, pp. 426-471
-
-
Bode, W.1
Turk, D.2
Karshikoy, A.3
-
8
-
-
0000625192
-
The CCP4 Suite: Collaborative Computational Project, Number 4
-
CCP4 (1994) The CCP4 Suite: Collaborative Computational Project, Number 4. Acta Crystallogr., D50, 760-763.
-
(1994)
Acta Crystallogr.
, vol.D50
, pp. 760-763
-
-
-
9
-
-
0026337077
-
The coagulation cascade: Initiation, maintenance, and regulation
-
Davie, E.W., Fujikawa, K. and Kisiel, W. (1991) The coagulation cascade: initiation, maintenance, and regulation. Biochemistry, 30, 10364-10370.
-
(1991)
Biochemistry
, vol.30
, pp. 10364-10370
-
-
Davie, E.W.1
Fujikawa, K.2
Kisiel, W.3
-
10
-
-
0028903005
-
Conformational transformations linked to active site ligation in human thrombin: Effect on the interaction with fibrinogen and the cleavable platelet receptor
-
De Cristofaro, R., De Candia, E., Picozzi, M. and Landolfi, R. (1995) Conformational transformations linked to active site ligation in human thrombin: effect on the interaction with fibrinogen and the cleavable platelet receptor. J. Mol. Biol., 245, 447-458.
-
(1995)
J. Mol. Biol.
, vol.245
, pp. 447-458
-
-
De Cristofaro, R.1
De Candia, E.2
Picozzi, M.3
Landolfi, R.4
-
11
-
-
0025120271
-
Use of fragments of hirudin to investigate thrombin-hirudin interaction
-
Dennis, S., Wallace, A., Hofsteenge, J. and Stone, S.R. (1990) Use of fragments of hirudin to investigate thrombin-hirudin interaction. Eur. J. Biochem., 188, 61-66.
-
(1990)
Eur. J. Biochem.
, vol.188
, pp. 61-66
-
-
Dennis, S.1
Wallace, A.2
Hofsteenge, J.3
Stone, S.R.4
-
12
-
-
79952608525
-
Accurate bond and angle parameters for X-ray protein structure refinement
-
Engh, R.A. and Huber, R. (1991) Accurate bond and angle parameters for X-ray protein structure refinement. Acta Crystallogr., A47, 392-400.
-
(1991)
Acta Crystallogr.
, vol.A47
, pp. 392-400
-
-
Engh, R.A.1
Huber, R.2
-
13
-
-
0028853810
-
Divining the serpin inhibition mechanism: A suicide substrate 'springe'?
-
Engh, R.A., Huber, R., Bode, W. and Schulze, A.J. (1995) Divining the serpin inhibition mechanism: a suicide substrate 'springe'? Trends Biotechnol., 13, 503-510.
-
(1995)
Trends Biotechnol.
, vol.13
, pp. 503-510
-
-
Engh, R.A.1
Huber, R.2
Bode, W.3
Schulze, A.J.4
-
14
-
-
16144365754
-
Enzyme flexibility, solvent and 'weak' interactions characterize thrombin-ligand interactions: Implications for drug design
-
Engh, R., Brandstetter, H., Sucher, G., Baumann, U., Kühne, A., Eichinger, A., Bode, W., Huber, R., Poll, T., Rudolph, R. and von der Saal, W. (1996) Enzyme flexibility, solvent and 'weak' interactions characterize thrombin-ligand interactions: implications for drug design. Structure, 4, 1353-1362.
-
(1996)
Structure
, vol.4
, pp. 1353-1362
-
-
Engh, R.1
Brandstetter, H.2
Sucher, G.3
Baumann, U.4
Kühne, A.5
Eichinger, A.6
Bode, W.7
Huber, R.8
Poll, T.9
Rudolph, R.10
Von Der Saal, W.11
-
15
-
-
0024558370
-
The roles of protein C and thrombomodulin in the regulation of blood coagulation
-
Esmon, C.T. (1989) The roles of protein C and thrombomodulin in the regulation of blood coagulation. J. Biol. Chem., 264, 4743-4746.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 4743-4746
-
-
Esmon, C.T.1
-
16
-
-
0021099422
-
Proteolytic formation and properties of γ-carboxyglutamic acid-domainless Protein C
-
Esmon, N.L., De Bault, L.E. and Esmon, C.T. (1983) Proteolytic formation and properties of γ-carboxyglutamic acid-domainless Protein C. J. Biol. Chem., 258, 5548-5553.
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 5548-5553
-
-
Esmon, N.L.1
De Bault, L.E.2
Esmon, C.T.3
-
17
-
-
0343355511
-
Kinetics of the reaction between trypsin and the pancreatic trypsin inhibitor
-
Green, N.M. (1957) Kinetics of the reaction between trypsin and the pancreatic trypsin inhibitor. Biochem. J., 66, 407-415.
-
(1957)
Biochem. J.
, vol.66
, pp. 407-415
-
-
Green, N.M.1
-
18
-
-
0028174260
-
192→Gln substitution in thrombin yields an enzyme that is effectively inhibited by bovine pancreatic trypsin inhibitor and tissue factor pathway inhibitor
-
192→Gln substitution in thrombin yields an enzyme that is effectively inhibited by bovine pancreatic trypsin inhibitor and tissue factor pathway inhibitor. J. Biol. Chem., 269, 18395-18400.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 18395-18400
-
-
Guinto, E.R.1
Ye, J.2
Le Bonniec, B.3
Esmon, C.T.4
-
19
-
-
0022529127
-
Effect of thrombomodulin on the kinetics of the interaction of thrombin with substrates and inhibitors
-
Hofsteenge, J., Taguchi, H. and Stone, S.R. (1986) Effect of thrombomodulin on the kinetics of the interaction of thrombin with substrates and inhibitors. Biochem. J., 237, 243-251.
-
(1986)
Biochem. J.
, vol.237
, pp. 243-251
-
-
Hofsteenge, J.1
Taguchi, H.2
Stone, S.R.3
-
20
-
-
0016291686
-
Structure of the complex formed by bovine trypsin and bovine pancreatic trypsin inhibitor. II. Crystallographic refinement at 1.9 Å resolution
-
Huber, R., Kukla, D., Bode, W., Schwager, P., Bartels, K., Deisenhofer, J. and Steigemann, W. (1974) Structure of the complex formed by bovine trypsin and bovine pancreatic trypsin inhibitor. II. Crystallographic refinement at 1.9 Å resolution. J. Mol. Biol., 89, 73-101.
-
(1974)
J. Mol. Biol.
, vol.89
, pp. 73-101
-
-
Huber, R.1
Kukla, D.2
Bode, W.3
Schwager, P.4
Bartels, K.5
Deisenhofer, J.6
Steigemann, W.7
-
21
-
-
84889120137
-
Improved methods for building protein models in electron density maps and location of errors in these models
-
Jones, T.A., Zou, J.-Y., Cowan, S.W. and Kjeldgaard, M. (1991) Improved methods for building protein models in electron density maps and location of errors in these models. Acta Crystallogr., A47, 110-119.
-
(1991)
Acta Crystallogr.
, vol.A47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.-Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
23
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of proteins
-
Kraulis, P.J. (1991) MOLSCRIPT: a program to produce both detailed and schematic plots of proteins. J. Appl. Crystallogr., 24, 946-950.
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
24
-
-
0025923430
-
Glu192→Gln substitution in thrombin mimics the catalytic switch induced by thrombomodulin
-
Le Bonniec, B.F. and Esmon, C.T. (1991) Glu192→Gln substitution in thrombin mimics the catalytic switch induced by thrombomodulin. Proc. Natl Acad. Sci. USA, 88, 7371-7375.
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 7371-7375
-
-
Le Bonniec, B.F.1
Esmon, C.T.2
-
25
-
-
0025740508
-
Thrombin Glu39 restricts the P3′ specificity to nonacidic residues
-
Le Bonniec, B.F., MacGillivray, R.T. and Esmon, C.T. (1991) Thrombin Glu39 restricts the P3′ specificity to nonacidic residues. J. Biol. Chem., 266, 13796-13803.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 13796-13803
-
-
Le Bonniec, B.F.1
MacGillivray, R.T.2
Esmon, C.T.3
-
26
-
-
0026733611
-
Interaction of thrombin des-ETW with antithrombin III, the Kunitz inhibitors, thrombomodulin and protein C
-
Le Bonniec, B.F., Guinto, E.R. and Esmon, C.T. (1992) Interaction of thrombin des-ETW with antithrombin III, the Kunitz inhibitors, thrombomodulin and protein C. J. Biol. Chem., 267, 19341-19348.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 19341-19348
-
-
Le Bonniec, B.F.1
Guinto, E.R.2
Esmon, C.T.3
-
27
-
-
0027177515
-
The role of thrombin's Tyr-Pro-Pro-Trp motif in the interaction with fibrinogen, thrombomodulin, protein C, antithrombin III, and the Kunitz inhibitors
-
Le Bonniec, B.F., Guinto, E.R., MacGillivray, R.T., Stone, S.R. and Esmon, C.T. (1993) The role of thrombin's Tyr-Pro-Pro-Trp motif in the interaction with fibrinogen, thrombomodulin, protein C, antithrombin III, and the Kunitz inhibitors. J. Biol. Chem., 268, 19055-19061.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 19055-19061
-
-
Le Bonniec, B.F.1
Guinto, E.R.2
MacGillivray, R.T.3
Stone, S.R.4
Esmon, C.T.5
-
31
-
-
0027983980
-
Structure of a nonadecapeptide of the fifth EGF domain of thrombomodulin complexed with thrombin
-
Mathews, I.I., Padmanabhan, K.P. and Tulinsky, A. (1994) Structure of a nonadecapeptide of the fifth EGF domain of thrombomodulin complexed with thrombin. Biochemistry, 33, 13547-13552.
-
(1994)
Biochemistry
, vol.33
, pp. 13547-13552
-
-
Mathews, I.I.1
Padmanabhan, K.P.2
Tulinsky, A.3
-
32
-
-
84920325457
-
AMoRe: An automated package for molecular replacement
-
Navaza, J. (1994) AMoRe: an automated package for molecular replacement. Acta Crystallogr., A50, 157-163.
-
(1994)
Acta Crystallogr.
, vol.A50
, pp. 157-163
-
-
Navaza, J.1
-
33
-
-
0000732609
-
Grasp-graphical representation and analysis of surface properties
-
Nicholls, A., Bharadwaj, R. and Honig, B. (1993) Grasp-graphical representation and analysis of surface properties. Biophys. J. 64, A166.
-
(1993)
Biophys. J.
, vol.64
-
-
Nicholls, A.1
Bharadwaj, R.2
Honig, B.3
-
34
-
-
0001410715
-
Regulation of thrombin by antithrombin and heparin cofactor II
-
Berliner, L.J. (ed.), Plenum Press, New York
-
Olson, S.T. and Björk, I. (1992) Regulation of thrombin by antithrombin and heparin cofactor II. In Berliner, L.J. (ed.), Thrombin: Structure and Function. Plenum Press, New York, pp. 159-217.
-
(1992)
Thrombin: Structure and Function
, pp. 159-217
-
-
Olson, S.T.1
Björk, I.2
-
35
-
-
0027155345
-
Disulfide bond isomerization in BPTI and BPTI(G36S): An NMR study of correlated mobility in proteins
-
Otting, G., Liepinsh, E. and Wüthrich, K. (1993) Disulfide bond isomerization in BPTI and BPTI(G36S): An NMR study of correlated mobility in proteins. Biochemistry, 32, 3571-3582.
-
(1993)
Biochemistry
, vol.32
, pp. 3571-3582
-
-
Otting, G.1
Liepinsh, E.2
Wüthrich, K.3
-
36
-
-
0020510606
-
1-antitrypsin Pittsburgh (358 Met→Arg), a fatal bleeding disorder
-
1-antitrypsin Pittsburgh (358 Met→Arg), a fatal bleeding disorder. New Engl. J. Med., 309, 694-698.
-
(1983)
New Engl. J. Med.
, vol.309
, pp. 694-698
-
-
Owen, M.C.1
Brennan, S.O.2
Lewis, J.H.3
Carrell, R.W.4
-
37
-
-
0027516679
-
Evidence for common structural changes in thrombin induced by active-site or exosite binding
-
Parry, M.A.A., Stone, S.R., Hofsteenge, J. and Jackman, P. (1993) Evidence for common structural changes in thrombin induced by active-site or exosite binding. Biochem. J., 290, 665-670.
-
(1993)
Biochem. J.
, vol.290
, pp. 665-670
-
-
Parry, M.A.A.1
Stone, S.R.2
Hofsteenge, J.3
Jackman, P.4
-
38
-
-
0027366387
-
Changes in interactions in complexes of hirudin derivatives and human α-thrombin due to different crystal forms
-
Priestle, J.P., Rahuel, J., Rink, H., Tones, M. and Grütter, M.G. (1993) Changes in interactions in complexes of hirudin derivatives and human α-thrombin due to different crystal forms. Protein Sci., 2, 1630-1642.
-
(1993)
Protein Sci.
, vol.2
, pp. 1630-1642
-
-
Priestle, J.P.1
Rahuel, J.2
Rink, H.3
Tones, M.4
Grütter, M.G.5
-
39
-
-
0030029895
-
Tryptophan 60D in the B-insertion loop of thrombin modulates the thrombin-antithrombin reaction
-
Rezaie, A.R. (1996) Tryptophan 60D in the B-insertion loop of thrombin modulates the thrombin-antithrombin reaction. Biochemistry, 35 1918-1924.
-
(1996)
Biochemistry
, vol.35
, pp. 1918-1924
-
-
Rezaie, A.R.1
-
40
-
-
0025866812
-
Refined structure of the hirudin-thrombin complex
-
Rydel, T.J., Tulinsky, A., Bode, W. and Huber, R. (1991) Refined structure of the hirudin-thrombin complex. J. Mol. Biol., 221, 583-601.
-
(1991)
J. Mol. Biol.
, vol.221
, pp. 583-601
-
-
Rydel, T.J.1
Tulinsky, A.2
Bode, W.3
Huber, R.4
-
41
-
-
0026068578
-
Mechanism of the inhibition of α-thrombin by hirudin-derived fragments hirudin(1-47) and hirudin(45-65)
-
Schmitz, T., Rothe, M. and Dodt, J. (1991) Mechanism of the inhibition of α-thrombin by hirudin-derived fragments hirudin(1-47) and hirudin(45-65). Eur. J. Biochem., 195, 251-256.
-
(1991)
Eur. J. Biochem.
, vol.195
, pp. 251-256
-
-
Schmitz, T.1
Rothe, M.2
Dodt, J.3
-
42
-
-
0027409404
-
A player of many parts: The spotlight falls on thrombin's structure
-
Stubbs, M.T. and Bode, W. (1993) A player of many parts: the spotlight falls on thrombin's structure. Thrombosis Res., 69, 1-58.
-
(1993)
Thrombosis Res.
, vol.69
, pp. 1-58
-
-
Stubbs, M.T.1
Bode, W.2
-
43
-
-
0028912561
-
The clot thickens... clues provided by thrombin structure
-
Stubbs, M.T. and Bode, W. (1995) The clot thickens... clues provided by thrombin structure. Trends Biochem. Sci., 20, 23-28.
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 23-28
-
-
Stubbs, M.T.1
Bode, W.2
-
44
-
-
0026548768
-
The interaction of thrombin with fibrinogen - A structural basis for its specificity
-
Stubbs, M.T., Oschkinat, H., Mayr, I., Huber, R., Angliker, H., Stone, S.R. and Bode, W. (1992) The interaction of thrombin with fibrinogen - a structural basis for its specificity. Eur. J. Biochem., 206, 187-195.
-
(1992)
Eur. J. Biochem.
, vol.206
, pp. 187-195
-
-
Stubbs, M.T.1
Oschkinat, H.2
Mayr, I.3
Huber, R.4
Angliker, H.5
Stone, S.R.6
Bode, W.7
-
46
-
-
0028784163
-
Two heads are better than one: Crystal structure of the insect derived double domain Kazal inhibitor rhodniin in complex with thrombin
-
van de Locht, A., Lamba, D., Bauer, M., Huber, R., Friedrich, T., Kröger, B., Höffken, W. and Bode, W. (1995) Two heads are better than one: crystal structure of the insect derived double domain Kazal inhibitor rhodniin in complex with thrombin. EMBO J., 14, 5149-5157.
-
(1995)
EMBO J.
, vol.14
, pp. 5149-5157
-
-
Locht, A.1
Lamba, D.2
Bauer, M.3
Huber, R.4
Friedrich, T.5
Kröger, B.6
Höffken, W.7
Bode, W.8
-
47
-
-
0029957955
-
The ornithodorin:thrombin crystal structure, a key to the TAP enigma?
-
van de Locht, A., Stubbs, M.T., Bode, W., Friedrich, T., Bollschweiler, C., Höffken, W. and Huber, R. (1996) The ornithodorin:thrombin crystal structure, a key to the TAP enigma? EMBO J., 15, 6011-6017.
-
(1996)
EMBO J.
, vol.15
, pp. 6011-6017
-
-
Locht, A.1
Stubbs, M.T.2
Bode, W.3
Friedrich, T.4
Bollschweiler, C.5
Höffken, W.6
Huber, R.7
-
49
-
-
0026351350
-
The active site of thrombin is altered upon binding to thrombomodulin
-
Ye, J., Esmon, N.L., Esmon, C.T. and Johnson, A.E. (1991) The active site of thrombin is altered upon binding to thrombomodulin. J. Biol. Chem., 266, 23016-23021.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 23016-23021
-
-
Ye, J.1
Esmon, N.L.2
Esmon, C.T.3
Johnson, A.E.4
|