mRNA cycling sequence binding protein from Leishmania donovani (LdCSBP) is covalently modified by ubiquitination

FEMS Microbiology Letters

Volumn 273, Issue 2, 2007, Pages 206-213

  Bhandari, Dipankar ^a   Saha, Partha ^a  

^a SAHA INSTITUTE OF NUCLEAR PHYSICS   (India)

Author keywords

Gene expression in S phase; Leishmania donovani; mRNA turnover; Posttranscriptional regulation of gene expression; Ubiquitin binding domain; Ubiquitination

Indexed keywords

BINDING PROTEIN; ENDONUCLEASE; MESSENGER RNA; UBIQUITIN;

AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; BINDING AFFINITY; CONTROLLED STUDY; LEISHMANIA DONOVANI; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN MODIFICATION; RNA BINDING; SEQUENCE ANALYSIS; UBIQUITINATION;

AMINO ACID MOTIFS; ANIMALS; GENE EXPRESSION REGULATION; LEISHMANIA DONOVANI; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY; PROTOZOAN PROTEINS; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA-BINDING PROTEINS; SEQUENCE ALIGNMENT; UBIQUITIN;

LEISHMANIA DONOVANI; TRYPANOSOMATIDAE;

EID: 34447500725     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2007.00789.x     Document Type: Article

References (29)

1. Banerjee S, Banerjee R, Das R, Duttagupta S Saha P (2003) Isolation, characterization and expression of a cyclin from Leishmania donovani. FEMS Microbiol Lett 226 : 285 289.
2. Banerjee S, Sen A, Das P Saha P (2006) Leishmania donovani cyclin 1 (LdCyc1) forms a complex with cell cycle kinase subunit CRK3 (LdCRK3) and is possibly involved in S-phase-related activities. FEMS Microbiol Lett 256 : 75 82.
3. Berriman M, Ghedin E, Hertz-Fowler C et al 2005) The Genome of the African Trypanosome Trypanosoma brucei. Science 309 : 416 422.
4. Boucher N, Wu Y, Dumas C, Dube M, Sereno D, Breton M Papadopoulou B (2002) A common mechanism of stage-regulated gene expression in Leishmania mediated by a conserved 3′-untranslated region element. J Biol Chem 277 : 19511 19520.
5. Clayton CE (2002) Life without transcriptional control? From fly to man and back again. Embo J 21 : 1881 1888.
6. D'Orso I, De Gaudenzi JG Frasch AC (2003) RNA-binding proteins and mRNA turnover in trypanosomes. Trends Parasitol 19 : 151 155.
7. El-Sayed NM, Myler PJ, Bartholomeu DC et al 2005a) The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease. Science 309 : 409 415.
8. El-Sayed NM, Myler PJ, Blandin G et al 2005b) Comparative genomics of trypanosomatid parasitic protozoa. Science 309 : 404 409.
9. Estevez AM, Kempf T Clayton C (2001) The exosome of Trypanosoma brucei. EMBO J 20 : 3831 3839.
10. Garneau NL, Wilusz J Wilusz CJ (2007) The highways and byways of mRNA decay. Nat Rev Mol Cell Biol 8 : 113 126.
11. Hicke L (2001) Protein regulation by monoubiquitin. Nat Rev Mol Cell Biol 2 : 195 201.
12. Hoeller D, Crosetto N, Blagoev B et al 2006) Regulation of ubiquitin-binding proteins by monoubiquitination. Nat Cell Biol 8 : 163 169.
13. Hofmann K Bucher P (1996) The UBA domain: a sequence motif present in multiple enzyme classes of the ubiquitination pathway. Trends Biochem Sci 21 : 172 173.
14. Hurley JH, Lee S Prag G (2006) Ubiquitin-binding domains. Biochem J 399 : 361 372.
15. Ivens AC, Peacock CS, Worthey EA et al 2005) The genome of the kinetoplastid parasite, Leishmania major. Science 309 : 436 442.
16. Kang RS, Daniels CM, Francis SA, Shih SC, Salerno WJ, Hicke L Radhakrishnan I (2003) Solution structure of a CUE-ubiquitin complex reveals a conserved mode of ubiquitin binding. Cell 113 : 621 630.
17. Lai WS, Carballo E, Thorn JM, Kennington EA Blackshear PJ (2000) Interactions of CCCH zinc finger proteins with mRNA. Binding of tristetraprolin-related zinc finger proteins to Au-rich elements and destabilization of mRNA. J Biol Chem 275 : 17827 17837.
18. Lai WS, Kennington EA Blackshear PJ (2002) Interactions of CCCH zinc finger proteins with mRNA: non-binding tristetraprolin mutants exert an inhibitory effect on degradation of Au-rich element-containing mRNAs. J Biol Chem 277 : 9606 9613.
19. Mahmood R Ray DS (1998) Nuleclear extracts of Crithidia fasciculata contain a factor(s) that binds to the 5′-untranslated regions of TOP2 and RPA1 mRNAs containing sequences required for their cell cycle regulation. J Biol Chem 273 : 23729 23734.
20. Mahmood R, Mittra B, Hines JC Ray DS (2001) Characterization of the Crithidia fasciculata mRNA cycling sequence binding proteins. Mol Cell Biol 21 : 4453 4459.
21. Marchler-Bauer A, Anderson JB, Derbyshire MK et al 2007) CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res 35 : D237 D240.
22. Milone J, Wilusz J Bellofatto V (2002) Identification of mRNA decapping activities and an ARE-regulated 3′ to 5′ exonuclease activity in trypanosome extracts. Nucleic Acids Res 30 : 4040 4050.
23. Mittra B Ray DS (2004) Presence of a poly(A) binding protein and two proteins with cell cycle-dependent phosphorylation in Crithidia fasciculata mRNA cycling sequence binding protein II. Eukaryot Cell 3 : 1185 1197.
24. Mittra B, Sinha KM, Hines JC Ray DS (2003) Presence of multiple mRNA cycling sequence element-binding proteins in Crithidia fasciculata. J Biol Chem 278 : 26564 26571.
25. Moreira D Philippe H (1999) Smr: a bacterial and eukaryotic homologue of the C-terminal region of the MutS2 family. Trends Biochem Sci 24 : 298 300.
26. Newbury SF (2006) Control of mRNA stability in eukaryotes. Biochem Soc Trans 34 : 30 34.
27. Shih SC, Prag G, Francis SA, Sutanto MA, Hurley JH Hicke L (2003) A ubiquitin-binding motif required for intramolecular monoubiquitylation, the CUE domain. Embo J 22 : 1273 1281.
28. Wilusz CJ Wilusz J (2004) Bringing the role of mRNA decay in the control of gene expression into focus. Trends Genet 20 : 491 497.
29. Zick A, Onn I, Bezalel R, Margalit H Shlomai J (2005) Assigning functions to genes: identification of S-phase expressed genes in Leishmania major based on post-transcriptional control elements. Nucleic Acids Res 33 : 4235 4242.