Fluorescence correlation spectroscopy: Novel variations of an established technique

Annual Review of Biophysics and Biomolecular Structure

Volumn 36, Issue , 2007, Pages 151-169

  Haustein, Elke ^a   Schwille, Petra ^a  

^a DRESDEN UNIVERSITY OF TECHNOLOGY   (Germany)

Author keywords

Autocorrelation; Cross correlation; Fluctuation; Multiphoton excitation; One photon excitation; Single molecule

Indexed keywords

FLUORESCENT DYE;

APPARATUS; CALCULATION; COLOR; CONCENTRATION RESPONSE; DYNAMIC EXERCISE; FLUORESCENCE CORRELATION SPECTROSCOPY; LASER; MATHEMATICAL ANALYSIS; MOLECULAR INTERACTION; MOTION; PHOTOCHEMISTRY; PHOTON; PHOTOSTIMULATION; PHYSICS; PRIORITY JOURNAL; REVIEW; SIGNAL DETECTION; TIME; VELOCITY;

BIOPHYSICS; CHEMISTRY, PHYSICAL; DATA INTERPRETATION, STATISTICAL; DIFFUSION; EQUIPMENT DESIGN; FLUORESCENT DYES; KINETICS; MODELS, STATISTICAL; MODELS, THEORETICAL; PHOTONS; SPECTROMETRY, FLUORESCENCE;

EID: 34347237194     PISSN: 10568700     EISSN: None     Source Type: Book Series    
DOI: 10.1146/annurev.biophys.36.040306.132612     Document Type: Review

References (88)

1. Al Soufi W, Reija B, Novo M, Felekyan S, Kühnemuth R, Seidel CAM. 2005. Fluorescence correlation spectroscopy, a tool to investigate supramolecular dynamics: inclusion complexes of pyronines with cyclodextrin. J. Am. Chem. Soc. 127:8775-84
2. Allen NW, Thompson NL. 2006. Ligand binding by estrogen receptor beta attached to nanospheres measured by fluorescence correlation spectroscopy. Cytometry 69A:524-32
3. Amediek A, Haustein E, Scherfeld D, Schwille P. 2002. Scanning dual-color cross-correlation analysis for dynamic colocalization studies of immobile molecules. Single Mol. 3:201-10
4. Aragón SR, Pecora R. 1975. Fluorescence correlation spectroscopy and Brownian rotational diffusion. Biopolymers 14:119-38
5. Bacia K, Scherfeld D, Kahya N, Schwille P. 2004. Fluorescence correlation spectroscopy relates rafts in model and native membranes. Biophys. J. 87:1034-43
6. Baudendistel N, Müller G, Waldeck W, Angel P, Langowski J. 2005. Two-hybrid fluorescence cross-correlation spectroscopy detects protein-protein interactions in vivo. Chemphyschem 6:984-90
7. Berland KM. 2004. Detection of specific DNA sequences using dual-color two-photon fluorescence correlation spectroscopy. J. Biotechnol. 108:127-36
8. Berland KM, So PT, Chen Y, Mantulin WW, Gratton E. 1996. Scanning two-photon fluctuation correlation spectroscopy: particle counting measurements for detection of molecular aggregation. Biophys. J. 71:410-20
9. Berland KM, So PT, Gratton E. 1995. Two-photon fluorescence correlation spectroscopy: method and application to the intracellular environment. Biophys. J. 68:694-701
10. Bernacchi S, Mueller G, Langowski J, Waldeck W. 2004. Characterization of simian virus 40 on its infectious entry pathway in cells using fluorescence correlation spectroscopy. Biochem. Soc. Trans. 32:746-49
11. Blom H, Johansson M, Gosch M, Sigmundsson T, Holm J, et al. 2002. Parallel flow measurements in microstructures by use of a multifocal 4 x 1 diffractive optical fan-out element. Appl. Opt. 41:6614-20
12. Broek WV, Fluang Z, Thompson NL. 1999. High-order autocorrelation with imaging fluorescence correlation spectroscopy: application to IgE on supported planar membranes. J. Fluoresc. 9:313-24
13. Burkhardt M, Heinze KG, Schwille P. 2005. Four-color fluorescence correlation spectroscopy realized in a grating-based detection platform. Opt. Lett. 30:2266-68
14. Burkhardt M, Schwille P. 2006. Electron multiplying CCD based detection for spatially resolved fluorescence correlation spectroscopy. Opt. Exp. 14:5013-20
15. Campbell RE, Tour O, Palmer AE, Steinbach PA, Baird GS, et al. 2002. A monomeric red fluorescent protein. Proc. Natl. Acad. Sci. USA 99:7877-82
16. Charier S, Meglio A, Alcor D, Cogne-Laage E, Allemand JF, et al. 2005. Reactant concentrations from fluorescence correlation spectroscopy with tailored fluorescent probes. An example of local calibration-free pH measurement. J. Am. Chem. Soc. 127:15491-505
17. Chattopadhyay K, Elson EL, Frieden C. 2005. The kinetics of conformational fluctuations in an unfolded protein measured by fluorescence methods. Proc. Natl. Acad. Sci. USA 102:2385-89
18. Chattopadhyay K, Saffarian S, Elson EL, Frieden C. 2005. Measuring unfolding of proteins in the presence of denaturant using fluorescence correlation spectroscopy. Biophys. J. 88:1413-22
19. Collini M, Caccia M, Chirico G, Barone F, Dogliotti E, Mazzei F. 2005. Two-photon fluorescence cross-correlation spectroscopy as a potential tool for high-throughput screening of DNA repair activity. Nucleic Acids Res. 33:e165
20. Cotlet M, Goodwin PM, Waldo GS, Werner JH. 2006. A comparison of the fluorescence dynamics of single molecules of a green fluorescent protein: one- versus two-photon excitation. Chemphyschem 7:250-60
21. Digman MA, Brown CM, Sengupta P, Wiseman PW, Horwitz AR, Gratton E. 2005. Measuring fast dynamics in solutions and cells with a laser scanning microscope. Biophys. J. 89:1317-27
22. Dittrich PS, Müller B, Schwille P. 2004. Studying reaction kinetics by simultaneous FRET and cross-correlation analysis in a miniaturized continuous flow reactor. Phys. Chem. Chem. Phys. 6:4416-20
23. Dittrich PS, Schäfer SP, Schwille P. 2005. Characterization of the photoconversion on reaction of the fluorescent protein Kaede on the single-molecule level. Biophys. J. 89:3446-55
24. Dittrich PS, Schwille P. 2002. Spatial two-photon fluorescence cross-correlation spectroscopy for controlling molecular transport in microfluidic structures. Anal. Chem. 74:4472-79
25. Eggeling C, Kask P, Winkler D, Jäger S. 2005. Rapid analysis of Forster resonance energy transfer by two-color global fluorescence correlation spectroscopy: trypsin proteinase reaction. Biophys. J. 89:605-18
26. Elson EL, Magde D. 1974. Fluorescence correlation spectroscopy. I. Conceptual basis and theory. Biopolymers 13:1-27
27. Elson EL, Schlessinger J, Koppel DE, Axelrod D, Webb WW. 1976. Measurement of lateral transport on cell surfaces. Prog. Clin. Biol. Res. 9:137-47
28. Enderlein J, Gregor I, Patra D, Fitter J. 2005. Statistical analysis of diffusion coefficient determination by fluorescence correlation spectroscopy. J. Fluoresc. 15:415-22
29. Fahey PF, Barak LS, Elson EL, Koppel DE, Wolf DE, Webb WW. 1977. Lateral diffusion in planar lipid bilayers. Science 195:305-6
30. Felekyan S, Kühnemuth R, Kudryavtsev V, Sandhagen C, Becker W, Seidel CA. 2005. Full correlation from picoseconds to seconds by time-resolved and time-correlated single photon detection. Rev. Sci. Instrum. 76:83104
31. Gopich I, Szabo A. 2005. Fluorophore-quencher distance correlation functions from single-molecule photon arrival trajectories. J. Phys. Chem. B 109:6845-48
32. Haupts U, Maiti S, Schwille P, Webb WW. 1998. Dynamics of fluorescence fluctuations in green fluorescent protein observed by fluorescence correlation spectroscopy. Proc. Natl. Acad. Sci. USA 95:13573-78
33. Haustein E, Schwille P. 2007. Fluorescence correlation spectroscopy: a versatile technique with single-molecule sensitivity. In Light Scattering-Fluctuation and Grating Techniques, ed. R Pecora, R Borsali, 2: In press. Dordrecht, The Neth.: Kluwer Academic. 1st ed.
34. Heinze KG, Jahnz M, Schwille P. 2004. Triple-color coincidence analysis: one step further in following higher order molecular complex formation. Biophys. J. 86:506-16
35. Fleinze KG, Rarbach M, Jahnz M, Schwille P. 2002. Two-photon fluorescence coincidence analysis: rapid measurements of enzyme kinetics. Biophys. J. 83:1671-81
36. Hess ST, Webb WW. 2002. Focal volume optics and experimental artifacts in confocal fluorescence correlation spectroscopy. Biophys. J. 83:2300-17
37. Hübner CG, Renn A, Renge I, Wild UP. 2001. Direct observation of the triplet lifetime quenching of single dye molecules by molecular oxygen. J. Chem. Phys. 115:9619-22
38. Humpolickova J, Gielen E, Benda A, Fagulova V, Vercammen J, et al. 2006. Probing diffusion laws within cellular membranes by Z-scan fluorescence correlation spectroscopy. Biophys. J. 91:L23-25
39. Hwang LC, Gosch M, Lasser T, Wohland T. 2006. Simultaneous multicolor fluorescence cross-correlation spectroscopy to detect higher order molecular interactions using single wavelength laser excitation. Biophys. J. 91:715-27
40. Hwang LC, Leutenegger M, Gosch M, Lasser T, Rjgler P, et al. 2006. Prism-based multicolor fluorescence correlation spectrometer. Opt. Lett. 31:1310-12
41. Hwang LC, Wohland T. 2004. Dual-color fluorescence cross-correlation spectroscopy using single laser wavelength excitation. Chemphyschem 5:549-51
42. Jahnz M, Schwille P. 2005. An ultrasensitive site-specific DNA recombination assay based on dual-color fluorescence cross-correlation spectroscopy. Nucleic Acids Res. 33:e60
43. Kannan B, Har JY, Lin P, Maruyama I, Ding JL, Wohland T. 2006. Electron multiplying charge-coupled device camera based fluorescence correlation spectroscopy. Anal. Chem. 78:3444-51
44. Kastrup L, Blom H, Eggeling C, Hell SW. 2005. Fluorescence fluctuation spectroscopy in subdiffraction focal volumes. Phys. Rev. Lett. 9417:8104
45. Kim J, Doose S, Neuweiler FT, Sauer M. 2006. The initial step of DNA hairpin folding: a kinetic analysis using fluorescence correlation spectroscopy. Nucleic Acids Res. 34:2516-27
46. Kim SA, Heinze KG, Bacia K, Waxham MN, Schwille P. 2005. Two-photon cross-correlation analysis of intracellular reactions with variable stoichiometry. Biophys. J. 88:4319-36
47. Kinjo M, Rigler R. 1995. Ultrasensitive hybridization analysis using fluorescence correlation spectroscopy. Nucleic Acids Res. 23:1795-99
48. Kohl T, Haustein E, Schwille P. 2005. Determining protease activity in vivo by fluorescence cross-correlation analysis. Biophys. J. 89:2770-82
49. Kohl T, Heinze KG, Kuhlemann R, Koltermann A, Schwille P. 2002. A protease assay for two-photon cross-correlation and FRET analysis based solely on fluorescent proteins. Proc. Natl. Acad. Sci. USA 99:12161-66
50. Korlach J, Baumgart T, Webb WW, Feigenson GW. 2005. Detection of motional heterogeneities in lipid bilayer membranes by dual probe fluorescence correlation spectroscopy. Biochim. Biophys. Acta 668:158-63
51. Kral T, Widerak K, Langner M, Hof M. 2005. Propidium iodide and PicoGreen as dyes for the DNA fluorescence correlation spectroscopy measurements. J. Fluoresc. 15:179-83
52. Lamb DC, Schenk A, Röcker C, Scalfi-Happ C, Nienhaus GU. 2000. Sensitivity enhancement in fluorescence correlation spectroscopy of multiple species using time-gated detection. Biophys. J. 79:1129-38
53. Larson DR, Zipfel WR, Williams RM, Clark SW, Bruchez MP, et al. 2003. Water-soluble quantum dots for multiphoton fluorescence imaging in vivo. Science 300:1434-36
54. Lenne PF, Wawrezinieck L, Conchonaud F, Wurtz O, Boned A, et al. 2006. Dynamic molecular confinement in the plasma membrane by microdomains and the cytoskeleton meshwork. EMBO J. 25:3245-56
55. Leutenegger M, Gosch M, Perentes A, Hoffmann P, Martin OJF, Lasser T. 2006. Confining the sampling volume for fluorescence correlation spectroscopy using a subwavelength sized aperture. Optics Exp. 14:956-69
56. Liedl T, Keller S, Simmel FC, Rädler JO, Parak WJ. 2005. Fluorescent nanocrystals as colloidal probes in complex fluids measured by fluorescence correlation spectroscopy. Small 1:997-1003
57. Lieto AM, Thompson NL. 2004. Total internal reflection with fluorescence correlation spectroscopy: nonfluorescent competitors. Biophys. J. 87:1268-78
58. Maertens G, Vercammen J, Debyser Z, Engelborghs Y. 2005. Measuring protein-protein interactions inside living cells using single color fluorescence correlation spectroscopy Application to human immunodeficiency virus type I integrase and LEDGF/p75. FASEB J. 19:1039-41
59. Magde D, Elson EL, Webb WW. 1974. Fluorescence correlation spectroscopy. II. An experimental realization. Biopolymers 13:29-61
60. Magde D, Elson EL, Webb WW. 1972. Thermodynamic fluctuations in a reacting system: measurement by fluorescence correlation spectroscopy. Phys. Rev. Lett. 29:705-8
61. Magde D, Webb WW, Elson EL. 1978. Fluorescence correlation spectroscopy. III. Uniform translation and laminar flow. Biopolymers 17:361-76
62. Merkle D, Block WD, Yu Y, Lees-Miller SP, Cramb DT. 2006. Analysis of DNA-dependent protein kinase-mediated DNA end joining by two-photon fluorescence cross-correlation spectroscopy. Biochemistry 45:4164-72
63. Meyer T, Schindler H. 1988. Particle counting by fluorescence correlation spectroscopy. Simultaneous measurement of aggregation and diffusion of molecules in solutions and in membranes. Biophys. J. 54:983-93
64. Müller BK, Zaychikov E, Bräuchle C, Lamb DC. 2005. Pulsed interleaved excitation. Biophys. J. 89:3508-22
65. Nomura Y, Fuchigami H, Kii H, Feng ZG, Nakamura T, Kinjo M. 2006. Detection of oxidative stress-induced mitochondrial DNA damage using fluorescence correlation spectroscopy. Anal. Biochem. 350:196-201
66. Octobre G, Lemercier C, Khochbin S, Robert-Nicoud M, Souchier C. 2005. Monitoring the interaction between DNA and a transcription factor (MEF2A) using fluorescence correlation spectroscopy. C. R. Biol. 328:1033-40
67. Petersen NO, Hoddelius PL, Wiseman PW, Seger O, Magnusson KE. 1993. Quantitation of membrane receptor distributions by image correlation spectroscopy: concept and application. Biophys. J. 65:1135-46
68. Pohl WH, Hellmuth H, Hilbert M, Seibel J, Walla PJ. 2006. A two-photon fluorescence-correlation study of lectins interacting with carbohydrated 20 nm beads. Chembiochem 7:268-74
69. Rauer B, Neumann E, Widengren J, Rigler R. 1996. Fluorescence correlation spectrometry of the interaction kinetics of tetramethylrhodamin alpha-bungarotoxin with Torpedo californica acetylcholine receptor. Biophys. Chem. 58:3-12
70. Ries J, Schwille P. 2006. Studying slow membrane dynamics with continuous wave scanning fluorescence correlation spectroscopy. Biophys. J. 91:1915-24
71. Rigler P, Meier W. 2006. Encapsulation of fluorescent molecules by functionalized polymeric nanocontainers: investigation by confocal fluorescence imaging and fluorescence correlation spectroscopy. J. Am. Chem. Soc. 128:367-73
72. Rigler R, Mets U, Widengren J, Kask P. 1993. Fluorescence correlation spectroscopy with high count rate and low background analysis of translational diffusion. Eur. Biophys. J. 22:169-75
73. Ruan QQ, Cheng MA, Levi M, Gratton E, Mantulin WW. 2004. Spatial-temporal studies of membrane dynamics: scanning fluorescence correlation spectroscopy (SFCS). Biophys. J. 87:1260-67
74. Ruckstuhl T, Seeger S. 2004. Attoliter detection volumes by confocal total-internal-reflection fluorescence microscopy. Opt. Lett. 29:569-71
75. Rusu L, Gambhir A, McLaughlin S, Rädler J. 2004. Fluorescence correlation spectroscopy studies of peptide and protein binding to phospholipid vesicles. Biophys. J. 87:1044-53
76. Samiee KT, Moran-Mirabal JM, Cheung YK, Craighead HG. 2006. Zero mode waveguides for single-molecule spectroscopy on lipid membranes. Biophys. J. 90:3288-99
77. Schwille P, Meyer-Almes FJ, Rigler R. 1997. Dual-color fluorescence cross-correlation spectroscopy for multicomponent diffusional analysis in solution. Biophys. J. 72:1878-86
78. Shaner NC, Campbell RE, Steinbach PA, Giepmans BN, Palmer AE, Tsien RY. 2004. Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nat. Biotechnol. 22:1567-72
79. Skinner JP, Chen Y, Müller JD. 2005. Position-sensitive scanning fluorescence correlation spectroscopy. Biophys. J. 89:1288-301
80. Swift JL, Heuff R, Cramb DT. 2006. A two-photon excitation fluorescence cross-correlation assay for a model ligand-receptor binding system using quantum dots. Biophys. J. 90:1396-410
81. Thews E, Gerken M, Eckert R, Zapfel J, Tietz C, Wrachtrup J. 2005. Cross talk free fluorescence cross correlation spectroscopy in live cells. Biophys. J. 89:2069-76
82. Thompson NL, Burghardt TP, Axelrod D. 1981. Measuring surface dynamics of biomolecules by total internal reflection fluorescence with photobleaching recovery or correlation spectroscopy. Biophys. J. 33:435-54
83. Wang ZF, Shah JV, Berns MW, Cleveland DW. 2006. In vivo quantitative studies of dynamic intracellular processes using fluorescence correlation spectroscopy. Biophys. J. 91:343-51
84. Widengren J, Mets U, Rigler R. 1999. Photodynamic properties of green fluorescent proteins investigated by fluorescence correlation spectroscopy. Chem. Phys. 250:171-86
85. Widengren J, Rigler R. 1998. Fluorescence correlation spectroscopy as a tool to investigate chemical reactions in solutions and on cell surfaces. Cell Mol. Biol. 44:857-79
86. Widengren J, Seidel CA. 2000. Manipulation and characterization of photo-induced transient states of merocyanine 540 by fluorescence correlation spectroscopy. Phys. Chem. Chem. Phys. 2:3435-41
87. Yu LL, Tan MY, Ho B, Ding JL, Wohland T. 2006. Determination of critical micelle concentrations and aggregation numbers by fluorescence correlation spectroscopy: aggregation of a lipopolysaccharide. Anal. Chim. Acta 556:216-25
88. Zhang PD, Li LA, Dong CQ, Qian HF, Ren JC. 2005. Sizes of water-soluble luminescent quantum dots measured by fluorescence correlation spectroscopy. Anal. Chim. Acta 546:46-51