-
1
-
-
0034094425
-
The RAG proteins and V(D)J recombination: complexes, ends, and transposition
-
Fugmann S.D., Lee A.I., Shockett P.E., Villey I.J., and Schatz D.G. The RAG proteins and V(D)J recombination: complexes, ends, and transposition. Annu. Rev. Immunol. 18 (2000) 495-527
-
(2000)
Annu. Rev. Immunol.
, vol.18
, pp. 495-527
-
-
Fugmann, S.D.1
Lee, A.I.2
Shockett, P.E.3
Villey, I.J.4
Schatz, D.G.5
-
2
-
-
0035997348
-
V(D)J recombination: RAG proteins, repair factors, and regulation
-
Gellert M. V(D)J recombination: RAG proteins, repair factors, and regulation. Annu. Rev. Biochem. 71 (2002) 101-132
-
(2002)
Annu. Rev. Biochem.
, vol.71
, pp. 101-132
-
-
Gellert, M.1
-
3
-
-
3242892354
-
The bounty of RAGs: recombination signal complexes and reaction outcomes
-
Swanson P.C. The bounty of RAGs: recombination signal complexes and reaction outcomes. Immunol. Rev. 200 (2004) 90-114
-
(2004)
Immunol. Rev.
, vol.200
, pp. 90-114
-
-
Swanson, P.C.1
-
4
-
-
3242886494
-
Recombination-activating gene proteins: more regulation, please
-
Sadofsky M.J. Recombination-activating gene proteins: more regulation, please. Immunol. Rev. 200 (2004) 83-89
-
(2004)
Immunol. Rev.
, vol.200
, pp. 83-89
-
-
Sadofsky, M.J.1
-
5
-
-
0032084698
-
Assembly of a 12/23 paired signal complex: a critical control point in V(D)J recombination
-
Hiom K., and Gellert M. Assembly of a 12/23 paired signal complex: a critical control point in V(D)J recombination. Mol. Cell 1 (1998) 1011-1019
-
(1998)
Mol. Cell
, vol.1
, pp. 1011-1019
-
-
Hiom, K.1
Gellert, M.2
-
6
-
-
0035818603
-
Intermediates in V(D)J recombination: a stable RAG1/2 complex sequesters cleaved RSS ends
-
Jones J.M., and Gellert M. Intermediates in V(D)J recombination: a stable RAG1/2 complex sequesters cleaved RSS ends. Proc. Natl. Acad. Sci. 98 (2001) 12926-12931
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 12926-12931
-
-
Jones, J.M.1
Gellert, M.2
-
7
-
-
0030887862
-
RAG1 and RAG2 form a stable postcleavage synaptic complex with DNA containing signal ends in V(D)J recombination
-
Agrawal A., and Schatz D.G. RAG1 and RAG2 form a stable postcleavage synaptic complex with DNA containing signal ends in V(D)J recombination. Cell 89 (1997) 43-53
-
(1997)
Cell
, vol.89
, pp. 43-53
-
-
Agrawal, A.1
Schatz, D.G.2
-
8
-
-
0036682980
-
Evidence of critical architectural function for the RAG proteins in end processing, protection, and joining in V(D)J recombination
-
Tsai C.L., Drejer A.H., and Schatz D.G. Evidence of critical architectural function for the RAG proteins in end processing, protection, and joining in V(D)J recombination. Genes Dev. 16 (2002) 1934-1949
-
(2002)
Genes Dev.
, vol.16
, pp. 1934-1949
-
-
Tsai, C.L.1
Drejer, A.H.2
Schatz, D.G.3
-
9
-
-
0035018257
-
A C-terminal region of RAG1 contacts the coding DNA during V(D)J reocmbination
-
Mo X., Bailin T., and Sadofsky M.J. A C-terminal region of RAG1 contacts the coding DNA during V(D)J reocmbination. Mol. Cell. Biol. 21 (2001) 2038-2047
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 2038-2047
-
-
Mo, X.1
Bailin, T.2
Sadofsky, M.J.3
-
10
-
-
9744241712
-
A biochemically defined system for mammalian nonhomologous DNA end joining
-
Ma Y., Lu H., Tippin B., Goodman M.F., Shimazaki N., Koiwai O., Hsieh C.-L., Schwarz K., and Lieber M.R. A biochemically defined system for mammalian nonhomologous DNA end joining. Mol. Cell 16 (2004) 701-713
-
(2004)
Mol. Cell
, vol.16
, pp. 701-713
-
-
Ma, Y.1
Lu, H.2
Tippin, B.3
Goodman, M.F.4
Shimazaki, N.5
Koiwai, O.6
Hsieh, C.-L.7
Schwarz, K.8
Lieber, M.R.9
-
11
-
-
25444475799
-
Repair of double-strand DNA breaks by the human nonhomologous DNA end joining pathway: the iterative processing model
-
Ma Y., Lu H., Schwarz K., and Lieber M.R. Repair of double-strand DNA breaks by the human nonhomologous DNA end joining pathway: the iterative processing model. Cell Cycle 4 (2005) 1193-2000
-
(2005)
Cell Cycle
, vol.4
, pp. 1193-2000
-
-
Ma, Y.1
Lu, H.2
Schwarz, K.3
Lieber, M.R.4
-
12
-
-
0030743386
-
Activity of DNA ligase IV stimulated by complex formation with XRCC4 protein in mammalian cells
-
Grawunder U., Wilm M., Wu X., Kulesza P., Wilson T.E., Mann M., and Lieber M.R. Activity of DNA ligase IV stimulated by complex formation with XRCC4 protein in mammalian cells. Nature 388 (1997) 492-495
-
(1997)
Nature
, vol.388
, pp. 492-495
-
-
Grawunder, U.1
Wilm, M.2
Wu, X.3
Kulesza, P.4
Wilson, T.E.5
Mann, M.6
Lieber, M.R.7
-
13
-
-
0029585872
-
The XRCC4 gene encodes a novel protein involved in DNA double-strand break repair and V(D)J recombination
-
Li Z., Otevrel T., Gao Y., Cheng H.-L., Seed B., Stamato T.D., Taccioli G.E., and Alt F.W. The XRCC4 gene encodes a novel protein involved in DNA double-strand break repair and V(D)J recombination. Cell 83 (1995) 1079-1089
-
(1995)
Cell
, vol.83
, pp. 1079-1089
-
-
Li, Z.1
Otevrel, T.2
Gao, Y.3
Cheng, H.-L.4
Seed, B.5
Stamato, T.D.6
Taccioli, G.E.7
Alt, F.W.8
-
14
-
-
0032511976
-
Late embryonic lethality and impaired V(D)J recombination in mice lacking DNA ligase IV
-
Frank K.M., Sekiguchi J.M., Seidl K.J., Swat W., Rathbun G.A., Cheng H.-L., Davidson L., Kangaloo L., and Alt F.W. Late embryonic lethality and impaired V(D)J recombination in mice lacking DNA ligase IV. Nature 396 (1998) 173-177
-
(1998)
Nature
, vol.396
, pp. 173-177
-
-
Frank, K.M.1
Sekiguchi, J.M.2
Seidl, K.J.3
Swat, W.4
Rathbun, G.A.5
Cheng, H.-L.6
Davidson, L.7
Kangaloo, L.8
Alt, F.W.9
-
15
-
-
0034612308
-
The nonhomologous end-joining pathway of DNA repair is required for genomic stability and the suppression of translocations
-
Ferguson D.O., Sekiguchi J.M., Chang S., Frank K.M., Gao Y., DePinho R.A., and Alt F.W. The nonhomologous end-joining pathway of DNA repair is required for genomic stability and the suppression of translocations. Proc. Natl. Acad. Sci. 97 (2000) 6630-6633
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 6630-6633
-
-
Ferguson, D.O.1
Sekiguchi, J.M.2
Chang, S.3
Frank, K.M.4
Gao, Y.5
DePinho, R.A.6
Alt, F.W.7
-
16
-
-
0842303307
-
Unraveling V(D)J recombination; insights into gene regulation
-
Jung D., and Alt F.W. Unraveling V(D)J recombination; insights into gene regulation. Cell 116 (2004) 299-311
-
(2004)
Cell
, vol.116
, pp. 299-311
-
-
Jung, D.1
Alt, F.W.2
-
17
-
-
0033387958
-
The RAG1/RAG2 complex constitutes a 3′ flap endonuclease: implications for junctional diversity in V(D)J and transpositional recombination
-
Santagata S., Besmer E., Villa A., Bozzi F., Allingham J.S., Sobacchi C., Haniford D.B., Vezzoni P., Nussenzweig M.C., Pan Z.Q., and Cortes P. The RAG1/RAG2 complex constitutes a 3′ flap endonuclease: implications for junctional diversity in V(D)J and transpositional recombination. Mol. Cell 4 (1999) 935-947
-
(1999)
Mol. Cell
, vol.4
, pp. 935-947
-
-
Santagata, S.1
Besmer, E.2
Villa, A.3
Bozzi, F.4
Allingham, J.S.5
Sobacchi, C.6
Haniford, D.B.7
Vezzoni, P.8
Nussenzweig, M.C.9
Pan, Z.Q.10
Cortes, P.11
-
18
-
-
0030795764
-
A complex of RAG-1 and RAG-2 persists on the DNA after single-strand cleavae at V(D)J recombination signal sequences
-
Grawunder U., and Lieber M.R. A complex of RAG-1 and RAG-2 persists on the DNA after single-strand cleavae at V(D)J recombination signal sequences. Nucl. Acids Res. 25 (1997) 1375-1382
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 1375-1382
-
-
Grawunder, U.1
Lieber, M.R.2
-
19
-
-
21744455557
-
Double-strand break formation by the RAG complex at the bcl-2 Mbr and at other non-B DNA structures in vitro
-
Raghavan S.C., Swanson P.C., Ma Y., and Lieber M.R. Double-strand break formation by the RAG complex at the bcl-2 Mbr and at other non-B DNA structures in vitro. Mol. Cell. Biol. 25 (2005) 5904-5919
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 5904-5919
-
-
Raghavan, S.C.1
Swanson, P.C.2
Ma, Y.3
Lieber, M.R.4
-
20
-
-
0032247578
-
Hairpin coding end opening is mediated by the recombination activating genes RAG1 and RAG2
-
Besmer E., Mansilla-Soto J., Cassard S., Sawchuk D.J., Brown G., Sadofsky M., Lewis S.M., Nussenzweig M.C., and Cortes P. Hairpin coding end opening is mediated by the recombination activating genes RAG1 and RAG2. Mol. Cell 2 (1998) 817-828
-
(1998)
Mol. Cell
, vol.2
, pp. 817-828
-
-
Besmer, E.1
Mansilla-Soto, J.2
Cassard, S.3
Sawchuk, D.J.4
Brown, G.5
Sadofsky, M.6
Lewis, S.M.7
Nussenzweig, M.C.8
Cortes, P.9
-
21
-
-
0032973315
-
DNA hairpin opening mediated by the RAG1 and RAG2 proteins
-
Shockett P.E., and Schatz D.G. DNA hairpin opening mediated by the RAG1 and RAG2 proteins. Mol. Cell. Biol. 19 (1999) 4159-4166
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 4159-4166
-
-
Shockett, P.E.1
Schatz, D.G.2
-
22
-
-
1542287213
-
A non-B-DNA structure at the bcl-2 major break point region is cleaved by the RAG complex
-
Raghavan S.C., Swanson P.C., Wu X., Hsieh C.-L., and Lieber M.R. A non-B-DNA structure at the bcl-2 major break point region is cleaved by the RAG complex. Nature 428 (2004) 88-93
-
(2004)
Nature
, vol.428
, pp. 88-93
-
-
Raghavan, S.C.1
Swanson, P.C.2
Wu, X.3
Hsieh, C.-L.4
Lieber, M.R.5
-
23
-
-
0035168323
-
The DDE motif in RAG-1 is contributed in trans to a single active site that catalyzes the nicking and transesterification steps of V(D) J recombination
-
Swanson P.C. The DDE motif in RAG-1 is contributed in trans to a single active site that catalyzes the nicking and transesterification steps of V(D) J recombination. Mol. Cell. Biol. 21 (2001) 449-458
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 449-458
-
-
Swanson, P.C.1
-
24
-
-
1042301422
-
Full-length RAG-2, and not full-length RAG1, specifically suppress RAG-mediated transposition but not hybrid joint formation or disintegration
-
Swanson P.C., Volkmer D., and Wang L. Full-length RAG-2, and not full-length RAG1, specifically suppress RAG-mediated transposition but not hybrid joint formation or disintegration. J. Biol. Chem. 279 (2004) 4034-4044
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 4034-4044
-
-
Swanson, P.C.1
Volkmer, D.2
Wang, L.3
-
25
-
-
0033512850
-
The mechanistic basis for coding end sequence effects in the initiation of V(D)J recombination
-
Yu K., and Lieber M.R. The mechanistic basis for coding end sequence effects in the initiation of V(D)J recombination. Mol. Cell. Biol. 19 (1999) 8094-8102
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 8094-8102
-
-
Yu, K.1
Lieber, M.R.2
-
26
-
-
0033782185
-
The nicking step of V(D)J recombination is independent of synapsis: implications for the immune repertoire
-
Yu K., and Lieber M.R. The nicking step of V(D)J recombination is independent of synapsis: implications for the immune repertoire. Mol. Cell. Biol. 20 (2000) 7914-7921
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 7914-7921
-
-
Yu, K.1
Lieber, M.R.2
-
27
-
-
0029891597
-
Distinct DNA sequence and structure requirements for the two steps of V(D)J recombination signal cleavage
-
Ramsden D.A., McBlane J.F., van Gent D.C., and Gellert M. Distinct DNA sequence and structure requirements for the two steps of V(D)J recombination signal cleavage. EMBO J. 15 (1996) 3197-3206
-
(1996)
EMBO J.
, vol.15
, pp. 3197-3206
-
-
Ramsden, D.A.1
McBlane, J.F.2
van Gent, D.C.3
Gellert, M.4
-
28
-
-
0029814965
-
DNA sequence and structure requirements for cleavage of V(D)J recombination signal sequences
-
Cuomo C.A., Mundy C.L., and Oettinger M.A. DNA sequence and structure requirements for cleavage of V(D)J recombination signal sequences. Mol. Cell. Biol. 16 (1996) 5683-5690
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 5683-5690
-
-
Cuomo, C.A.1
Mundy, C.L.2
Oettinger, M.A.3
-
29
-
-
0344874233
-
DNA mismatches and GC-rich motifs target transposition by the RAG1/RAG2 transposase
-
Tsai C.L., Chatterji M., and Schatz D.G. DNA mismatches and GC-rich motifs target transposition by the RAG1/RAG2 transposase. Nucl. Acids Res. 31 (2003) 6180-6190
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 6180-6190
-
-
Tsai, C.L.1
Chatterji, M.2
Schatz, D.G.3
-
30
-
-
0030962091
-
Cryptic signals and the fidelity of V(D)J joining
-
Lewis S.M., Agard E., Suh S., and Czyzyk L. Cryptic signals and the fidelity of V(D)J joining. Mol. Cell. Biol. 17 (1997) 3125-3136
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 3125-3136
-
-
Lewis, S.M.1
Agard, E.2
Suh, S.3
Czyzyk, L.4
-
31
-
-
0035800747
-
Analysis of the V(D)J recombination efficiency at lymphoid chromosomal translocation breakpoints
-
Raghavan S.C., Kirsch I.R., and Lieber M.R. Analysis of the V(D)J recombination efficiency at lymphoid chromosomal translocation breakpoints. J. Biol. Chem. 276 (2001) 29126-29133
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 29126-29133
-
-
Raghavan, S.C.1
Kirsch, I.R.2
Lieber, M.R.3
-
32
-
-
0037033440
-
V(D)J-mediated translocations in lymphoid neoplasms: a functional assessment of genomic instability by cryptic sites
-
Marculescu R., Le T., Simon P., Jaeger U., and Nadel B. V(D)J-mediated translocations in lymphoid neoplasms: a functional assessment of genomic instability by cryptic sites. J. Exp. Med. 195 (2002) 85-98
-
(2002)
J. Exp. Med.
, vol.195
, pp. 85-98
-
-
Marculescu, R.1
Le, T.2
Simon, P.3
Jaeger, U.4
Nadel, B.5
-
33
-
-
0026588937
-
BCL2 oncogene translocation is mediated by a c-like consensus
-
Wyatt R.T., Rudders R.A., Zelenetz A., Delellis R.A., and Krontiris T.G. BCL2 oncogene translocation is mediated by a c-like consensus. J. Exp. Med. 175 (1992) 1575-1588
-
(1992)
J. Exp. Med.
, vol.175
, pp. 1575-1588
-
-
Wyatt, R.T.1
Rudders, R.A.2
Zelenetz, A.3
Delellis, R.A.4
Krontiris, T.G.5
-
34
-
-
0343953047
-
Follicular lymphomas BCL-2/IgH junctions contain templated nucleotide insertions: novel insights into the mechanism of t(14;18) translocation
-
Jager U., Bocskor S., Le T., Mitterbauer G., Bolz I., Chott A., Kneba A., Mannhalter C., and Nadel B. Follicular lymphomas BCL-2/IgH junctions contain templated nucleotide insertions: novel insights into the mechanism of t(14;18) translocation. Blood 95 (2000) 3520-3529
-
(2000)
Blood
, vol.95
, pp. 3520-3529
-
-
Jager, U.1
Bocskor, S.2
Le, T.3
Mitterbauer, G.4
Bolz, I.5
Chott, A.6
Kneba, A.7
Mannhalter, C.8
Nadel, B.9
-
35
-
-
20744431751
-
Evidence for a triplex DNA conformation at the bcl-2 major breakpoint region of the t(14;18) translocation
-
Raghavan S.C., Chastain P., Lee J.S., Hegde B.G., Houston S., Langen R., Hsieh C.-L., Haworth I., and Lieber M.R. Evidence for a triplex DNA conformation at the bcl-2 major breakpoint region of the t(14;18) translocation. J. Biol. Chem. 280 (2005) 22749-22760
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 22749-22760
-
-
Raghavan, S.C.1
Chastain, P.2
Lee, J.S.3
Hegde, B.G.4
Houston, S.5
Langen, R.6
Hsieh, C.-L.7
Haworth, I.8
Lieber, M.R.9
-
36
-
-
0027296517
-
Regulation of V(D)J recombination activator protein RAG-2 by phosphorylation
-
Lin W.-C., and Desiderio S. Regulation of V(D)J recombination activator protein RAG-2 by phosphorylation. Science 260 (1993) 953-959
-
(1993)
Science
, vol.260
, pp. 953-959
-
-
Lin, W.-C.1
Desiderio, S.2
-
37
-
-
0028223271
-
Cell cycle regulation of RAG-2 V(D)J recombinase
-
Lin W.-C., and Desiderio S. Cell cycle regulation of RAG-2 V(D)J recombinase. Proc. Natl. Acad. Sci. U.S.A. 91 (1994) 2733-2737
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 2733-2737
-
-
Lin, W.-C.1
Desiderio, S.2
|