메뉴 건너뛰기




Volumn 246, Issue 2, 2007, Pages 290-308

An interval approach for dealing with flux distributions and elementary modes activity patterns

Author keywords

spectrum; Elementary modes; Extreme pathways; Metabolic flux analysis

Indexed keywords

ACTIVITY PATTERN; FLUX MEASUREMENT; MEASUREMENT METHOD;

EID: 34247094270     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2006.12.029     Document Type: Article
Times cited : (53)

References (29)
  • 1
    • 0030570128 scopus 로고    scopus 로고
    • Bonarius, H.P.J., Hatzimanikatis, V., Meesters, K.P.H., de Gooijer, C.D., Schmid, G., Tramper, J., 1996. Biotechnol. Bioeng. 50(3), 299-318.
  • 2
    • 0030804853 scopus 로고    scopus 로고
    • Flux analysis of underdetermined metabolic networks: the quest for the missing constraints
    • Bonarius H.P.J., Schmid G., and Tramper J. Flux analysis of underdetermined metabolic networks: the quest for the missing constraints. Tibtech 15 (1997) 308-314
    • (1997) Tibtech , vol.15 , pp. 308-314
    • Bonarius, H.P.J.1    Schmid, G.2    Tramper, J.3
  • 3
    • 0034114133 scopus 로고    scopus 로고
    • From genome to cellular phenotype-a role for metabolic flux analysis?
    • Cornish-Bowden A., and Cárdenas M.L. From genome to cellular phenotype-a role for metabolic flux analysis?. Nature Biotechnology 18 3 (2000) 267-268
    • (2000) Nature Biotechnology , vol.18 , Issue.3 , pp. 267-268
    • Cornish-Bowden, A.1    Cárdenas, M.L.2
  • 4
    • 0038367650 scopus 로고    scopus 로고
    • Analysis of cellular metabolism of hybridoma cells at distinct physiological states
    • 10.1263/jbb.95.317
    • Gambhir A., Korke R., Lee J., Fu P.C., Europa A., and Hu W.S. Analysis of cellular metabolism of hybridoma cells at distinct physiological states. J. Biosci. Bioeng. 95 4 (2003) 317-327 10.1263/jbb.95.317
    • (2003) J. Biosci. Bioeng. , vol.95 , Issue.4 , pp. 317-327
    • Gambhir, A.1    Korke, R.2    Lee, J.3    Fu, P.C.4    Europa, A.5    Hu, W.S.6
  • 5
    • 0037079054 scopus 로고    scopus 로고
    • Computational systems biology
    • Kitano H. Computational systems biology. Nature 420 6912 (2002) 206-210
    • (2002) Nature , vol.420 , Issue.6912 , pp. 206-210
    • Kitano, H.1
  • 6
    • 0037197159 scopus 로고    scopus 로고
    • Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria
    • Klamt S., Schuster S., and Gilles E.D. Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria. Biotechnol. Bioeng. 77 7 (2002) 734-751
    • (2002) Biotechnol. Bioeng. , vol.77 , Issue.7 , pp. 734-751
    • Klamt, S.1    Schuster, S.2    Gilles, E.D.3
  • 7
    • 0033585824 scopus 로고    scopus 로고
    • Metabolite and isotopomer balancing in the analysis of metabolic cycles: I. theory
    • 10.1002/(SICI)1097-0290(19990220)62:4&{music sharp sign}60;375::AID-BIT1&{music sharp sign}62;3.0.CO;2-O
    • Klapa M.I., Park S.M., Sinskey A.J., and Stephanopoulos G. Metabolite and isotopomer balancing in the analysis of metabolic cycles: I. theory. Biotechnol. Bioeng. 62 4 (1999) 375-391 10.1002/(SICI)1097-0290(19990220)62:4&{music sharp sign}60;375::AID-BIT1&{music sharp sign}62;3.0.CO;2-O
    • (1999) Biotechnol. Bioeng. , vol.62 , Issue.4 , pp. 375-391
    • Klapa, M.I.1    Park, S.M.2    Sinskey, A.J.3    Stephanopoulos, G.4
  • 8
    • 0033764285 scopus 로고    scopus 로고
    • The challenges of in silico biology
    • Palsson B. The challenges of in silico biology. Nat. Biotechnol. 18 11 (2000) 1147-1150
    • (2000) Nat. Biotechnol. , vol.18 , Issue.11 , pp. 1147-1150
    • Palsson, B.1
  • 12
    • 10644275010 scopus 로고    scopus 로고
    • A method for the determination of flux in elementary modes, and its application to lactobacillus rhamnosus
    • Poolman M.G., Venkatesh K.V., Pidcock M.K., and Fell D.A. A method for the determination of flux in elementary modes, and its application to lactobacillus rhamnosus. Biotechnol. Bioeng. 88 5 (2004) 601-612
    • (2004) Biotechnol. Bioeng. , vol.88 , Issue.5 , pp. 601-612
    • Poolman, M.G.1    Venkatesh, K.V.2    Pidcock, M.K.3    Fell, D.A.4
  • 13
    • 0037385718 scopus 로고    scopus 로고
    • Genome-scale microbial in silico models: the constraints-based approach
    • 10.1016/S0167-7799(03)00030-1
    • Price N.D., Papin J.A., Schilling C.H., and Palsson B.O. Genome-scale microbial in silico models: the constraints-based approach. Trends Biotechnol. 21 4 (2003) 162-169 10.1016/S0167-7799(03)00030-1
    • (2003) Trends Biotechnol. , vol.21 , Issue.4 , pp. 162-169
    • Price, N.D.1    Papin, J.A.2    Schilling, C.H.3    Palsson, B.O.4
  • 14
    • 33847207161 scopus 로고    scopus 로고
    • Provost, A., Bastin, G., Agathos, S.N., Schneider, Y.J., 2005. Metabolic design of macroscopic models: application to CHO cells. Decision and Control, 2005 and 2005 European Control Conference.CDC-ECC'05.44th IEEE Conference on: pp. 2982-2989.
  • 15
    • 2342452470 scopus 로고    scopus 로고
    • Dynamic metabolic modelling under the balanced growth condition
    • 10.1016/j.jprocont.2003.12.004
    • Provost A., and Bastin G. Dynamic metabolic modelling under the balanced growth condition. J. Process Control 14 7 (2004) 717-728 10.1016/j.jprocont.2003.12.004
    • (2004) J. Process Control , vol.14 , Issue.7 , pp. 717-728
    • Provost, A.1    Bastin, G.2
  • 16
    • 1242306261 scopus 로고    scopus 로고
    • High-throughput phenomics: experimental methods for mapping fluxomes
    • 10.1016/j.copbio.2003.11.001
    • Sauer U. High-throughput phenomics: experimental methods for mapping fluxomes. Curr. Opin. Biotechnol. 15 1 (2004) 58-63 10.1016/j.copbio.2003.11.001
    • (2004) Curr. Opin. Biotechnol. , vol.15 , Issue.1 , pp. 58-63
    • Sauer, U.1
  • 17
    • 0034615791 scopus 로고    scopus 로고
    • Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective
    • 10.1006/jtbi.2000.1073
    • Schilling C.H., Letscher D., and Palsson B.O. Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective. J. Theor. Biol. 203 3 (2000) 229-248 10.1006/jtbi.2000.1073
    • (2000) J. Theor. Biol. , vol.203 , Issue.3 , pp. 229-248
    • Schilling, C.H.1    Letscher, D.2    Palsson, B.O.3
  • 18
    • 0033136109 scopus 로고    scopus 로고
    • Metabolic pathway analysis: basic concepts and scientific applications in the post-genomic era
    • Schilling C.H., Schuster S., Palsson B.O., and Heinrich R. Metabolic pathway analysis: basic concepts and scientific applications in the post-genomic era. Biotechnol. Progr. 15 3 (1999) 296-303
    • (1999) Biotechnol. Progr. , vol.15 , Issue.3 , pp. 296-303
    • Schilling, C.H.1    Schuster, S.2    Palsson, B.O.3    Heinrich, R.4
  • 19
    • 0032838693 scopus 로고    scopus 로고
    • Quantitative analysis of metabolic fluxes in Escherichia coli, using two-dimensional NMR spectroscopy and complete isotopomer models
    • Schmidt K., Nielsen J., and Villadsen J. Quantitative analysis of metabolic fluxes in Escherichia coli, using two-dimensional NMR spectroscopy and complete isotopomer models. J. Biotechnol. 71 1-3 (1999) 175-189
    • (1999) J. Biotechnol. , vol.71 , Issue.1-3 , pp. 175-189
    • Schmidt, K.1    Nielsen, J.2    Villadsen, J.3
  • 20
    • 0033080396 scopus 로고    scopus 로고
    • Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering
    • 10.1016/S0167-7799(98)01290-6
    • Schuster S., Dandekar T., and Fell D.A. Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering. Trends Biotechnol. 17 2 (1999) 53-60 10.1016/S0167-7799(98)01290-6
    • (1999) Trends Biotechnol. , vol.17 , Issue.2 , pp. 53-60
    • Schuster, S.1    Dandekar, T.2    Fell, D.A.3
  • 21
    • 0034064689 scopus 로고    scopus 로고
    • A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
    • Schuster S., Fell D.A., and Dandekar T. A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks. Nat. Biotechnol. 18 3 (2000) 326-332
    • (2000) Nat. Biotechnol. , vol.18 , Issue.3 , pp. 326-332
    • Schuster, S.1    Fell, D.A.2    Dandekar, T.3
  • 22
    • 33746083686 scopus 로고    scopus 로고
    • Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis
    • 10.1186/1471-2105-7-186
    • Schwartz J.M., and Kanehisa M. Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis. BMC Bioinformat. 7 (2006) 186 10.1186/1471-2105-7-186
    • (2006) BMC Bioinformat. , vol.7 , pp. 186
    • Schwartz, J.M.1    Kanehisa, M.2
  • 24
    • 0037079050 scopus 로고    scopus 로고
    • Metabolic network structure determines key aspects of functionality and regulation
    • Stelling J., Klamt S., Bettenbrock K., Schuster S., and Gilles E.D. Metabolic network structure determines key aspects of functionality and regulation. Nature 420 6912 (2002) 190-193
    • (2002) Nature , vol.420 , Issue.6912 , pp. 190-193
    • Stelling, J.1    Klamt, S.2    Bettenbrock, K.3    Schuster, S.4    Gilles, E.D.5
  • 26
    • 0035823264 scopus 로고    scopus 로고
    • The small world inside large metabolic networks
    • Wagner A., and Fell D.A. The small world inside large metabolic networks. Biological Sciences 268 1478 (2001) 1803-1810
    • (2001) Biological Sciences , vol.268 , Issue.1478 , pp. 1803-1810
    • Wagner, A.1    Fell, D.A.2
  • 27
    • 0142092727 scopus 로고    scopus 로고
    • Reconstructing metabolic flux vectors from extreme pathways: defining the alpha-spectrum
    • 10.1016/S0022-5193(03)00168-1
    • Wiback S.J., Mahadevan R., and Palsson B.O. Reconstructing metabolic flux vectors from extreme pathways: defining the alpha-spectrum. J. Theor. Biol. 224 3 (2003) 313-324 10.1016/S0022-5193(03)00168-1
    • (2003) J. Theor. Biol. , vol.224 , Issue.3 , pp. 313-324
    • Wiback, S.J.1    Mahadevan, R.2    Palsson, B.O.3
  • 28
    • 0034741985 scopus 로고    scopus 로고
    • A universal framework for 13C metabolic flux analysis
    • Wiechert W., Mollney M., Petersen S., and de Graaf A.A. A universal framework for 13C metabolic flux analysis. Metab. Eng. 3 3 (2001) 265-283
    • (2001) Metab. Eng. , vol.3 , Issue.3 , pp. 265-283
    • Wiechert, W.1    Mollney, M.2    Petersen, S.3    de Graaf, A.A.4
  • 29
    • 0029239589 scopus 로고
    • Intracellular flux analysis in hybridomas using mass balances and in vitro 13C NMR
    • 10.1002/bit.260450403
    • Zupke C., and Stephanopoulos G. Intracellular flux analysis in hybridomas using mass balances and in vitro 13C NMR. Biotechnol. Bioeng. 45 4 (1995) 292-303 10.1002/bit.260450403
    • (1995) Biotechnol. Bioeng. , vol.45 , Issue.4 , pp. 292-303
    • Zupke, C.1    Stephanopoulos, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.