-
1
-
-
0035668779
-
A choice of death - The signal-transduction of immune-mediated beta-cell apoptosis
-
10.1007/s001250100021 11793013
-
Eizirik DL Mandrup-Poulsen T A choice of death - the signal-transduction of immune-mediated beta-cell apoptosis Diabetologia 2001 44 2115-2133 10.1007/s001250100021 11793013
-
(2001)
Diabetologia
, vol.44
, pp. 2115-2133
-
-
Eizirik, D.L.1
Mandrup-Poulsen, T.2
-
2
-
-
33644749322
-
Mechanisms of pancreatic beta-cell death in type 1 and type 2 diabetes: Many differences, few similarities
-
16306347
-
Cnop M Welsh N Jonas JC Jorns A Lenzen S Eizirik DL Mechanisms of pancreatic beta-cell death in type 1 and type 2 diabetes: Many differences, few similarities Diabetes 2005 54 Suppl 2 S97-S107 16306347
-
(2005)
Diabetes
, vol.54
, Issue.SUPPL. 2
-
-
Cnop, M.1
Welsh, N.2
Jonas, J.C.3
Jorns, A.4
Lenzen, S.5
Eizirik, D.L.6
-
3
-
-
0035029867
-
Identification of novel cytokine-induced genes in pancreatic β-cells by high-density oligonucleotide arrays
-
11334433
-
Cardozo AK Kruhoffer M Leeman R Orntoft T Eizirik DL Identification of novel cytokine-induced genes in pancreatic β-cells by high-density oligonucleotide arrays Diabetes 2001 50 909-920 11334433
-
(2001)
Diabetes
, vol.50
, pp. 909-920
-
-
Cardozo, A.K.1
Kruhoffer, M.2
Leeman, R.3
Orntoft, T.4
Eizirik, D.L.5
-
4
-
-
0035966006
-
A comprehensive analysis of cytokine-induced and nuclear factor-κB-dependent genes in primary rat pancreatic β-cells
-
10.1074/jbc.M108658200 11687580
-
Cardozo AK Heimberg H Heremans Y Leeman R Kutlu B Kruhoffer M Orntoft T Eizirik DL A comprehensive analysis of cytokine-induced and nuclear factor-κB-dependent genes in primary rat pancreatic β-cells J Biol Chem 2001 276 48879-48886 10.1074/jbc.M108658200 11687580
-
(2001)
J Biol Chem
, vol.276
, pp. 48879-48886
-
-
Cardozo, A.K.1
Heimberg, H.2
Heremans, Y.3
Leeman, R.4
Kutlu, B.5
Kruhoffer, M.6
Orntoft, T.7
Eizirik, D.L.8
-
5
-
-
0346846765
-
Global profiling of double stranded RNA- and IFN-γ-induced genes in rat pancreatic beta cells
-
10.1007/s00125-003-1245-y 14600816
-
Rasschaert J Liu D Kutlu B Cardozo AK Kruhoffer M ORntoft TF Eizirik DL Global profiling of double stranded RNA- and IFN-γ-induced genes in rat pancreatic beta cells Diabetologia 2003 46 1641-1657 10.1007/ s00125-003-1245-y 14600816
-
(2003)
Diabetologia
, vol.46
, pp. 1641-1657
-
-
Rasschaert, J.1
Liu, D.2
Kutlu, B.3
Cardozo, A.K.4
Kruhoffer, M.5
ORntoft, T.F.6
Eizirik, D.L.7
-
7
-
-
23844550325
-
Global profiling of coxsackievirus- and cytokine-induced gene expression in human pancreatic islets
-
10.1007/s00125-005-1839-7 15991020
-
Ylipaasto P Kutlu B Rasilainen S Rasschaert J Salmela K Teerijoki H Korsgren O Lahesmaa R Hovi T Eizirik DL Otonkoski T Roivainen M Global profiling of coxsackievirus- and cytokine-induced gene expression in human pancreatic islets Diabetologia 2005 48 1510-1522 10.1007/ s00125-005-1839-7 15991020
-
(2005)
Diabetologia
, vol.48
, pp. 1510-1522
-
-
Ylipaasto, P.1
Kutlu, B.2
Rasilainen, S.3
Rasschaert, J.4
Salmela, K.5
Teerijoki, H.6
Korsgren, O.7
Lahesmaa, R.8
Hovi, T.9
Eizirik, D.L.10
Otonkoski, T.11
Roivainen, M.12
-
8
-
-
4444376712
-
Signaling to NF-κB
-
10.1101/gad.1228704 15371334
-
Hayden MS Ghosh S Signaling to NF-κB Genes Dev 2004 18 2195-2224 10.1101/gad.1228704 15371334
-
(2004)
Genes Dev
, vol.18
, pp. 2195-2224
-
-
Hayden, M.S.1
Ghosh, S.2
-
9
-
-
33746594835
-
Cytokine-induced proapoptotic gene expression in insulin-producing cells is related to rapid, sustained, and nonoscillatory nuclear factor-κB activation
-
10.1210/me.2005-0268 16556731
-
Ortis F Cardozo AK Crispim D Storling J Mandrup-Poulsen T Eizirik DL Cytokine-induced proapoptotic gene expression in insulin-producing cells is related to rapid, sustained, and nonoscillatory nuclear factor-κB activation Mol Endocrinol 2006 20 1867-1879 10.1210/ me.2005-0268 16556731
-
(2006)
Mol Endocrinol
, vol.20
, pp. 1867-1879
-
-
Ortis, F.1
Cardozo, A.K.2
Crispim, D.3
Storling, J.4
Mandrup-Poulsen, T.5
Eizirik, D.L.6
-
10
-
-
0035488777
-
Inhibition of cytokine-induced NF-κB activation by adenovirus-mediated expression of a NF-κB super-repressor prevents β-cell apoptosis
-
11574401
-
Heimberg H Heremans Y Jobin C Leemans R Cardozo AK Darville M Eizirik DL Inhibition of cytokine-induced NF-κB activation by adenovirus-mediated expression of a NF-κB super-repressor prevents β-cell apoptosis Diabetes 2001 50 2219-2224 11574401
-
(2001)
Diabetes
, vol.50
, pp. 2219-2224
-
-
Heimberg, H.1
Heremans, Y.2
Jobin, C.3
Leemans, R.4
Cardozo, A.K.5
Darville, M.6
Eizirik, D.L.7
-
11
-
-
33645518035
-
Conditional and specific NF-κB blockade protects pancreatic beta cells from diabetogenic agents
-
1458796 16551748 10.1073/pnas.0508166103
-
Eldor R Yeffet A Baum K Doviner V Amar D Ben-Neriah Y Christofori G Peled A Carel JC Boitard C Klein T Serup P Eizirik DL Melloul D Conditional and specific NF-κB blockade protects pancreatic beta cells from diabetogenic agents Proc Natl Acad Sci USA 2006 103 5072-5077 1458796 16551748 10.1073/pnas.0508166103
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 5072-5077
-
-
Eldor, R.1
Yeffet, A.2
Baum, K.3
Doviner, V.4
Amar, D.5
Ben-Neriah, Y.6
Christofori, G.7
Peled, A.8
Carel, J.C.9
Boitard, C.10
Klein, T.11
Serup, P.12
Eizirik, D.L.13
Melloul, D.14
-
12
-
-
0035432603
-
Cytokine induction of Fas gene expression in insulin-producing cells requires the transcription factors NF-κB and C/EBP
-
11473033
-
Darville MI Eizirik DL Cytokine induction of Fas gene expression in insulin-producing cells requires the transcription factors NF-κB and C/EBP Diabetes 2001 50 1741-1748 11473033
-
(2001)
Diabetes
, vol.50
, pp. 1741-1748
-
-
Darville, M.I.1
Eizirik, D.L.2
-
13
-
-
0031827241
-
Regulation by cytokines of the inducible nitric oxide synthase promoter in insulin-producing cells
-
10.1007/s001250051036 9754830
-
Darville MI Eizirik DL Regulation by cytokines of the inducible nitric oxide synthase promoter in insulin-producing cells Diabetologia 1998 41 1101-1108 10.1007/s001250051036 9754830
-
(1998)
Diabetologia
, vol.41
, pp. 1101-1108
-
-
Darville, M.I.1
Eizirik, D.L.2
-
14
-
-
85047685938
-
NF-κB is required for cytokine-induced manganese superoxide dismutase expression in insulin-producing cells
-
10.1210/en.141.1.153 10614634
-
Darville MI Ho YS Eizirik DL NF-κB is required for cytokine-induced manganese superoxide dismutase expression in insulin-producing cells Endocrinology 2000 141 153-162 10.1210/ en.141.1.153 10614634
-
(2000)
Endocrinology
, vol.141
, pp. 153-162
-
-
Darville, M.I.1
Ho, Y.S.2
Eizirik, D.L.3
-
15
-
-
0037317269
-
Molecular regulation of monocyte chemoattractant protein-1 expression in pancreatic β-cells
-
12540607
-
Kutlu B Darville MI Cardozo AK Eizirik DL Molecular regulation of monocyte chemoattractant protein-1 expression in pancreatic β-cells Diabetes 2003 52 348-355 12540607
-
(2003)
Diabetes
, vol.52
, pp. 348-355
-
-
Kutlu, B.1
Darville, M.I.2
Cardozo, A.K.3
Eizirik, D.L.4
-
16
-
-
0037452576
-
Regulatory gene networks and the properties of the developmental process
-
149855 12578984 10.1073/pnas.0437746100
-
Davidson EH McClay DR Hood L Regulatory gene networks and the properties of the developmental process Proc Natl Acad Sci USA 2003 100 1475-1480 149855 12578984 10.1073/pnas.0437746100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 1475-1480
-
-
Davidson, E.H.1
McClay, D.R.2
Hood, L.3
-
17
-
-
24144475053
-
Discrimination of yeast genes involved in methionine and phosphate metabolism on the basis of upstream motifs
-
10.1093/bioinformatics/bti558 15998664
-
Gonze D Pinloche S Gascuel O van Helden J Discrimination of yeast genes involved in methionine and phosphate metabolism on the basis of upstream motifs Bioinformatics 2005 21 3490-3500 10.1093/bioinformatics/bti558 15998664
-
(2005)
Bioinformatics
, vol.21
, pp. 3490-3500
-
-
Gonze, D.1
Pinloche, S.2
Gascuel, O.3
van Helden, J.4
-
18
-
-
22344449669
-
Constructing transcriptional regulatory networks
-
10.1101/gad.1325605 15998805
-
Blais A Dynlacht BD Constructing transcriptional regulatory networks Genes Dev 2005 19 1499-1511 10.1101/gad.1325605 15998805
-
(2005)
Genes Dev
, vol.19
, pp. 1499-1511
-
-
Blais, A.1
Dynlacht, B.D.2
-
20
-
-
21144439147
-
Assessing computational tools for the discovery of transcription factor binding sites
-
10.1038/nbt1053 15637633
-
Tompa M Li N Bailey TL Church GM De Moor B Eskin E Favorov AV Frith MC Fu Y Kent WJ Makeev VJ Mironov AA Noble WS Pavesi G Pesole G Regnier M Simonis N Sinha S Thijs G van Helden J Vandenbogaert M Weng Z Workman C Ye C Zhu Z Assessing computational tools for the discovery of transcription factor binding sites Nat Biotechnol 2005 23 137-144 10.1038/nbt1053 15637633
-
(2005)
Nat Biotechnol
, vol.23
, pp. 137-144
-
-
Tompa, M.1
Li, N.2
Bailey, T.L.3
Church, G.M.4
De Moor, B.5
Eskin, E.6
Favorov, A.V.7
Frith, M.C.8
Fu, Y.9
Kent, W.J.10
Makeev, V.J.11
Mironov, A.A.12
Noble, W.S.13
Pavesi, G.14
Pesole, G.15
Regnier, M.16
Simonis, N.17
Sinha, S.18
Thijs, G.19
van Helden, J.20
Vandenbogaert, M.21
Weng, Z.22
Workman, C.23
Ye, C.24
Zhu, Z.25
more..
-
21
-
-
1842584947
-
Applied bioinformatics for the identification of regulatory elements
-
10.1038/nrg1315 15131651
-
Wasserman WW Sandelin A Applied bioinformatics for the identification of regulatory elements Nat Rev Genet 2004 5 276-287 10.1038/nrg1315 15131651
-
(2004)
Nat Rev Genet
, vol.5
, pp. 276-287
-
-
Wasserman, W.W.1
Sandelin, A.2
-
22
-
-
33644789724
-
Integrating genomic data to predict transcription factor binding
-
16362910
-
Holloway DT Kon M DeLisi C Integrating genomic data to predict transcription factor binding Genome Inform 2005 16 83-94 16362910
-
(2005)
Genome Inform
, vol.16
, pp. 83-94
-
-
Holloway, D.T.1
Kon, M.2
DeLisi, C.3
-
23
-
-
0035986888
-
Evolution of transcription factor binding sites in Mammalian gene regulatory regions: Conservation and turnover
-
12082130
-
Dermitzakis ET Clark AG Evolution of transcription factor binding sites in Mammalian gene regulatory regions: Conservation and turnover Mol Biol Evol 2002 19 1114-1121 12082130
-
(2002)
Mol Biol Evol
, vol.19
, pp. 1114-1121
-
-
Dermitzakis, E.T.1
Clark, A.G.2
-
24
-
-
0030044940
-
Implementation of linear and quadratic discriminant analysis incorporating costs of misclassification
-
10.1016/0169-2607(95)01705-4 8646839
-
Grouven U Bergel F Schultz A Implementation of linear and quadratic discriminant analysis incorporating costs of misclassification Comput Methods Programs Biomed 1996 49 55-60 10.1016/0169-2607(95)01705-4 8646839
-
(1996)
Comput Methods Programs Biomed
, vol.49
, pp. 55-60
-
-
Grouven, U.1
Bergel, F.2
Schultz, A.3
-
25
-
-
0034329372
-
Discriminant analysis and its application in DNA sequence motif recognition
-
10.1093/bib/1.4.331 11465051
-
Zhang MQ Discriminant analysis and its application in DNA sequence motif recognition Brief Bioinform 2000 1 331-342 10.1093/bib/1.4.331 11465051
-
(2000)
Brief Bioinform
, vol.1
, pp. 331-342
-
-
Zhang, M.Q.1
-
26
-
-
33748805219
-
Predicting transcription factor binding sites using local over-representation and comparative genomics
-
1570149 16945132 10.1186/1471-2105-7-396
-
Defrance M Touzet H Predicting transcription factor binding sites using local over-representation and comparative genomics BMC Bioinformatics 2006 7 396 1570149 16945132 10.1186/1471-2105-7-396
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 396
-
-
Defrance, M.1
Touzet, H.2
-
27
-
-
0034072450
-
DNA binding sites: Representation and discovery
-
10.1093/bioinformatics/16.1.16 10812473
-
Stormo GD DNA binding sites: Representation and discovery Bioinformatics 2000 16 16-23 10.1093/bioinformatics/16.1.16 10812473
-
(2000)
Bioinformatics
, vol.16
, pp. 16-23
-
-
Stormo, G.D.1
-
28
-
-
0742306815
-
Computational prediction of transcription-factor binding site locations
-
395725 14709165 10.1186/gb-2003-5-1-201
-
Bulyk ML Computational prediction of transcription-factor binding site locations Genome Biol 2003 5 201 395725 14709165 10.1186/gb-2003-5-1-201
-
(2003)
Genome Biol
, vol.5
, pp. 201
-
-
Bulyk, M.L.1
-
29
-
-
0033976586
-
TRANSFAC: An integrated system for gene expression regulation
-
102445 10592259 10.1093/nar/28.1.316
-
Wingender E Chen X Hehl R Karas H Liebich I Matys V Meinhardt T Pruss M Reuter I Schacherer F TRANSFAC: An integrated system for gene expression regulation Nucleic Acids Res 2000 28 316-319 102445 10592259 10.1093/nar/ 28.1.316
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 316-319
-
-
Wingender, E.1
Chen, X.2
Hehl, R.3
Karas, H.4
Liebich, I.5
Matys, V.6
Meinhardt, T.7
Pruss, M.8
Reuter, I.9
Schacherer, F.10
-
30
-
-
0030895289
-
Evolution of the primate lineage leading to modern humans: Phylogenetic and demographic inferences from DNA sequences
-
20807 9114074 10.1073/pnas.94.9.4811
-
Takahata N Satta Y Evolution of the primate lineage leading to modern humans: Phylogenetic and demographic inferences from DNA sequences Proc Natl Acad Sci USA 1997 94 4811-4815 20807 9114074 10.1073/pnas.94.9.4811
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 4811-4815
-
-
Takahata, N.1
Zatta, Y.2
-
31
-
-
0037417891
-
Placental mammal diversification and the Cretaceous-Tertiary boundary
-
298725 12552136 10.1073/pnas.0334222100
-
Springer MS Murphy WJ Eizirik E O'Brien SJ Placental mammal diversification and the Cretaceous-Tertiary boundary Proc Natl Acad Sci USA 2003 100 1056-1061 298725 12552136 10.1073/pnas.0334222100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 1056-1061
-
-
Springer, M.S.1
Murphy, W.J.2
Eizirik, E.3
O'Brien, S.J.4
-
32
-
-
0036300823
-
Computational identification of transcription factor binding sites via a transcription-factor-centric clustering (TFCC) algorithm
-
10.1016/S0022-2836(02)00026-8 12054769
-
Zhu Z Pilpel Y Church GM Computational identification of transcription factor binding sites via a transcription-factor-centric clustering (TFCC) algorithm J Mol Biol 2002 318 71-81 10.1016/S0022-2836(02)00026-8 12054769
-
(2002)
J Mol Biol
, vol.318
, pp. 71-81
-
-
Zhu, Z.1
Pilpel, Y.2
Church, G.M.3
-
33
-
-
30344440870
-
Transcription factor target practice
-
10.1016/j.cell.2005.12.026 16413477
-
Holstege FC Clevers H Transcription factor target practice Cell 2006 124 21-23 10.1016/j.cell.2005.12.026 16413477
-
(2006)
Cell
, vol.124
, pp. 21-23
-
-
Holstege, F.C.1
Clevers, H.2
-
34
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
10.1038/nature01262 12466850
-
Waterston RH Lindblad-Toh K Birney E Rogers J Abril JF Agarwal P Agarwala R Ainscough R Alexandersson M An P Antonarakis SE Attwood J Baertsch R Bailey J Barlow K Beck S Berry E Birren B Bloom T Bork P Botcherby M Bray N Brent MR Brown DG Brown SD Bult C Burton J Butler J Campbell RD Carninci P Initial sequencing and comparative analysis of the mouse genome Nature 2002 420 520-562 10.1038/nature01262 12466850
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
Agarwala, R.7
Ainscough, R.8
Alexandersson, M.9
An, P.10
Antonarakis, S.E.11
Attwood, J.12
Baertsch, R.13
Bailey, J.14
Barlow, K.15
Beck, S.16
Berry, E.17
Birren, B.18
Bloom, T.19
Bork, P.20
Botcherby, M.21
Bray, N.22
Brent, M.R.23
Brown, D.G.24
Brown, S.D.25
Bult, C.26
Burton, J.27
Butler, J.28
Campbell, R.D.29
Carninci, P.30
more..
-
35
-
-
0038444122
-
Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells
-
430898 12727897 10.1101/gr.947203
-
Elkon R Linhart C Sharan R Shamir R Shiloh Y Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells Genome Res 2003 13 773-780 430898 12727897 10.1101/ gr.947203
-
(2003)
Genome Res
, vol.13
, pp. 773-780
-
-
Elkon, R.1
Linhart, C.2
Sharan, R.3
Shamir, R.4
Shiloh, Y.5
-
36
-
-
14544285567
-
New approaches for in silico identification of cytokine-modified beta cell gene networks
-
10.1196/annals.1337.007 15699492
-
Kutlu B Naamane N Berthou L Eizirik DL New approaches for in silico identification of cytokine-modified beta cell gene networks Ann N Y Acad Sci 2004 1037 41-58 10.1196/annals.1337.007 15699492
-
(2004)
Ann N Y Acad Sci
, vol.1037
, pp. 41-58
-
-
Kutlu, B.1
Naamane, N.2
Berthou, L.3
Eizirik, D.L.4
-
37
-
-
0027331583
-
The role of NF-κB and NF-IL6 transactivating factors in the synergistic activation of human serum amyloid A gene expression by interleukin-1 and interleukin-6
-
8244997
-
Betts JC Cheshire JK Akira S Kishimoto T Woo P The role of NF-κB and NF-IL6 transactivating factors in the synergistic activation of human serum amyloid A gene expression by interleukin-1 and interleukin-6 J Biol Chem 1993 268 25624-25631 8244997
-
(1993)
J Biol Chem
, vol.268
, pp. 25624-25631
-
-
Betts, J.C.1
Cheshire, J.K.2
Akira, S.3
Kishimoto, T.4
Woo, P.5
-
38
-
-
0027453552
-
Transcription factors NF-IL6 and NF-κB synergistically activate transcription of the inflammatory cytokines, interleukin 6 and interleukin 8
-
47740 8234276 10.1073/pnas.90.21.10193
-
Matsusaka T Fujikawa K Nishio Y Mukaida N Matsushima K Kishimoto T Akira S Transcription factors NF-IL6 and NF-κB synergistically activate transcription of the inflammatory cytokines, interleukin 6 and interleukin 8 Proc Natl Acad Sci USA 1993 90 10193-10197 47740 8234276 10.1073/pnas.90.21.10193
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 10193-10197
-
-
Matsusaka, T.1
Fujikawa, K.2
Nishio, Y.3
Mukaida, N.4
Matsushima, K.5
Kishimoto, T.6
Akira, S.7
-
39
-
-
0041386167
-
Prediction of potential C/EBP/NF-κB composite elements using matrix-based search methods
-
12762847
-
Shelest E Kel AE Goessling E Wingender E Prediction of potential C/EBP/ NF-κB composite elements using matrix-based search methods In Silico Biol 2003 3 71-79 12762847
-
(2003)
In Silico Biol
, vol.3
, pp. 71-79
-
-
Shelest, E.1
Kel, A.E.2
Goessling, E.3
Wingender, E.4
-
40
-
-
0041829442
-
Recent advances in computational promoter analysis in understanding the transcriptional regulatory network
-
10.1016/j.bbrc.2003.08.052 12963016
-
Qiu P Recent advances in computational promoter analysis in understanding the transcriptional regulatory network Biochem Biophys Res Commun 2003 309 495-501 10.1016/j.bbrc.2003.08.052 12963016
-
(2003)
Biochem Biophys Res Commun
, vol.309
, pp. 495-501
-
-
Qiu, P.1
-
41
-
-
0033596121
-
Activators and target genes of Rel/NF-κB transcription factors
-
10.1038/sj.onc.1203239 10602461
-
Pahl HL Activators and target genes of Rel/NF-κB transcription factors Oncogene 1999 18 6853-6866 10.1038/sj.onc.1203239 10602461
-
(1999)
Oncogene
, vol.18
, pp. 6853-6866
-
-
Pahl, H.L.1
-
42
-
-
79955378748
-
Rel/NF-κB Transcription Factors
-
Rel/NF-κB Transcription Factors http://people.bu.edu/gilmore/nf-kb/ target/
-
-
-
-
43
-
-
0025302552
-
Interaction of an NF-κB-like factor with a site upstream of the c-myc promoter
-
54190 2191300 10.1073/pnas.87.12.4727
-
Duyao MP Buckler AJ Sonenshein GE Interaction of an NF-κB-like factor with a site upstream of the c-myc promoter Proc Natl Acad Sci USA 1990 87 4727-4731 54190 2191300 10.1073/pnas.87.12.4727
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 4727-4731
-
-
Duyao, M.P.1
Buckler, A.J.2
Sonenshein, G.E.3
-
44
-
-
0038631908
-
In silico identification of metazoan transcriptional regulatory regions
-
12712249
-
Wasserman WW Krivan W In silico identification of metazoan transcriptional regulatory regions Naturwissenschaften 2003 90 156-166 12712249
-
(2003)
Naturwissenschaften
, vol.90
, pp. 156-166
-
-
Wasserman, W.W.1
Krivan, W.2
-
45
-
-
33746829168
-
Pro-apoptotic role of NF-κB: Implications for cancer therapy
-
16563635
-
Radhakrishnan SK Kamalakaran S Pro-apoptotic role of NF-κB: Implications for cancer therapy Biochim Biophys Acta 2006 1766 53-62 16563635
-
(2006)
Biochim Biophys Acta
, vol.1766
, pp. 53-62
-
-
Radhakrishnan, S.K.1
Kamalakaran, S.2
-
46
-
-
84874658760
-
NF-κB target genes
-
NF-κB target genes http://bioinfo.lifl.fr/NF-KB/
-
-
-
-
47
-
-
13244265694
-
Sp1-associated activation of macrophage inflammatory protein-2 promoter by CpG-oligodeoxynucleotide and lipopolysaccharide
-
10.1007/s00018-004-4399-y 15666090
-
Lee KW Lee Y Kwon HJ Kim DS Sp1-associated activation of macrophage inflammatory protein-2 promoter by CpG-oligodeoxynucleotide and lipopolysaccharide Cell Mol Life Sci 2005 62 188-198 10.1007/ s00018-004-4399-y 15666090
-
(2005)
Cell Mol Life Sci
, vol.62
, pp. 188-198
-
-
Lee, K.W.1
Lee, Y.2
Kwon, H.J.3
Kim, D.S.4
-
48
-
-
0027523467
-
Cooperative interaction between interferon (IFN) stimulus response element and κB sequence motifs controls IFN γ- and lipopolysaccharide-stimulated transcription from the murine IP-10 promoter
-
8454640
-
Ohmori Y Hamilton TA Cooperative interaction between interferon (IFN) stimulus response element and κB sequence motifs controls IFN γ- and lipopolysaccharide-stimulated transcription from the murine IP-10 promoter J Biol Chem 1993 268 6677-6688 8454640
-
(1993)
J Biol Chem
, vol.268
, pp. 6677-6688
-
-
Ohmori, Y.1
Hamilton, T.A.2
-
49
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
10.1038/35057062 11237011
-
Lander ES Linton LM Birren B Nusbaum C Zody MC Baldwin J Devon K Dewar K Doyle M FitzHugh W Funke R Gage D Harris K Heaford A Howland J Kann L Lehoczky J LeVine R McEwan P McKernan K Meldrim J Mesirov JP Miranda C Morris W Naylor J Raymond C Rosetti M Santos R Sheridan A Sougnez C Initial sequencing and analysis of the human genome Nature 2001 409 860-921 10.1038/35057062 11237011
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
Funke, R.11
Gage, D.12
Harris, K.13
Heaford, A.14
Howland, J.15
Kann, L.16
Lehoczky, J.17
LeVine, R.18
McEwan, P.19
McKernan, K.20
Meldrim, J.21
Mesirov, J.P.22
Miranda, C.23
Morris, W.24
Naylor, J.25
Raymond, C.26
Rosetti, M.27
Santos, R.28
Sheridan, A.29
Sougnez, C.30
more..
-
50
-
-
0035895505
-
The sequence of the human genome
-
10.1126/science.1058040 11181995
-
Venter JC Adams MD Myers EW Li PW Mural RJ Sutton GG Smith HO Yandell M Evans CA Holt RA Gocayne JD Amanatides P Ballew RM Huson DH Wortman JR Zhang Q Kodira CD Zheng XH Chen L Skupski M Subramanian G Thomas PD Zhang J Gabor Miklos GL Nelson C Broder S Clark AG Nadeau J McKusick VA Zinder N The sequence of the human genome Science 2001 291 1304-1351 10.1126/science.1058040 11181995
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
Smith, H.O.7
Yandell, M.8
Evans, C.A.9
Holt, R.A.10
Gocayne, J.D.11
Amanatides, P.12
Ballew, R.M.13
Huson, D.H.14
Wortman, J.R.15
Zhang, Q.16
Kodira, C.D.17
Zheng, X.H.18
Chen, L.19
Skupski, M.20
Subramanian, G.21
Thomas, P.D.22
Zhang, J.23
Gabor Miklos, G.L.24
Nelson, C.25
Broder, S.26
Clark, A.G.27
Nadeau, J.28
McKusick, V.A.29
Zinder, N.30
more..
-
51
-
-
1842684068
-
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
-
10.1038/nature02426 15057822
-
Gibbs RA Weinstock GM Metzker ML Muzny DM Sodergren EJ Scherer S Scott G Steffen D Worley KC Burch PE Okwuonu G Hines S Lewis L DeRamo C Delgado O Dugan-Rocha S Miner G Morgan M Hawes A Gill R Celera Holt RA Adams MD Amanatides PG Baden-Tillson H Barnstead M Chin S Evans CA Ferriera S Fosler C Genome sequence of the Brown Norway rat yields insights into mammalian evolution Nature 2004 428 493 521 10.1038/nature02426 15057822
-
(2004)
Nature
, vol.428
, pp. 493-521
-
-
Gibbs, R.A.1
Weinstock, G.M.2
Metzker, M.L.3
Muzny, D.M.4
Sodergren, E.J.5
Scherer, S.6
Scott, G.7
Steffen, D.8
Worley, K.C.9
Burch, P.E.10
Okwuonu, G.11
Hines, S.12
Lewis, L.13
DeRamo, C.14
Delgado, O.15
Dugan-Rocha, S.16
Miner, G.17
Morgan, M.18
Hawes, A.19
Gill, R.20
Celera21
Holt, R.A.22
Adams, M.D.23
Amanatides, P.G.24
Baden-Tillson, H.25
Barnstead, M.26
Chin, S.27
Evans, C.A.28
Ferriera, S.29
Fosler, C.30
more..
-
52
-
-
23644437526
-
Disruption of the γ-interferon signaling pathway at the level of signal transducer and activator of transcription-1 prevents immune destruction of beta-cells
-
16046307
-
Gysemans CA Ladriere L Callewaert H Rasschaert J Flamez D Levy DE Matthys P Eizirik DL Mathieu C Disruption of the γ-interferon signaling pathway at the level of signal transducer and activator of transcription-1 prevents immune destruction of beta-cells Diabetes 2005 54 2396-2403 16046307
-
(2005)
Diabetes
, vol.54
, pp. 2396-2403
-
-
Gysemans, C.A.1
Ladriere, L.2
Callewaert, H.3
Rasschaert, J.4
Flamez, D.5
Levy, D.E.6
Matthys, P.7
Eizirik, D.L.8
Mathieu, C.9
-
53
-
-
84886764936
-
ENSEMBL
-
ENSEMBL http://www.ensembl.org
-
-
-
-
54
-
-
0032826179
-
Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
-
10.1093/bioinformatics/15.7.563 10487864
-
Hertz GZ Stormo GD Identifying DNA and protein patterns with statistically significant alignments of multiple sequences Bioinformatics 1999 15 563-577 10.1093/bioinformatics/15.7.563 10487864
-
(1999)
Bioinformatics
, vol.15
, pp. 563-577
-
-
Hertz, G.Z.1
Stormo, G.D.2
-
56
-
-
25444463295
-
Feature selection and nearest centroid classification for protein mass spectrometry
-
1274262 15788095 10.1186/1471-2105-6-68
-
Levner I Feature selection and nearest centroid classification for protein mass spectrometry BMC Bioinformatics 2005 6 68 1274262 15788095 10.1186/1471-2105-6-68
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 68
-
-
Levner, I.1
-
57
-
-
11344280625
-
Evaluation of noise reduction techniques in the splice junction recognition problem
-
10.1590/S1415-47572004000400031
-
Lorena AC de Carvalho AC Evaluation of noise reduction techniques in the splice junction recognition problem Genetics and Molecular Biology 2004 27 665-672 10.1590/S1415-47572004000400031
-
(2004)
Genetics and Molecular Biology
, vol.27
, pp. 665-672
-
-
Lorena, A.C.1
de Carvalho, A.C.2
-
58
-
-
0041620271
-
Regulatory sequence analysis tools
-
168973 12824373 10.1093/nar/gkg567
-
van Helden J Regulatory sequence analysis tools Nucleic Acids Res 2003 31 3593-3596 168973 12824373 10.1093/nar/gkg567
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3593-3596
-
-
van Helden, J.1
-
59
-
-
84886767148
-
Beta-Cell Gene Expression Bank
-
Beta-Cell Gene Expression Bank http://t1dbase.org/cgi-bin/enter_bcgb.cgi
-
-
-
-
60
-
-
45449107946
-
Statistical package R
-
Statistical package R http://cran.r-project.org
-
-
-
-
61
-
-
1542399989
-
FatiGO: A web tool for finding significant associations of Gene Ontology terms with groups of genes
-
10.1093/bioinformatics/btg455 14990455
-
Al-Shahrour F Diaz-Uriarte R Dopazo J FatiGO: A web tool for finding significant associations of Gene Ontology terms with groups of genes Bioinformatics 2004 20 578-580 10.1093/bioinformatics/btg455 14990455
-
(2004)
Bioinformatics
, vol.20
, pp. 578-580
-
-
Al-Shahrour, F.1
Diaz-Uriarte, R.2
Dopazo, J.3
-
62
-
-
84886763064
-
-
FatiGO http://fatigo.bioinfo.cipf.es
-
-
-
-
63
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y Hochberg Y Controlling the false discovery rate: A practical and powerful approach to multiple testing J Roy Stat Soc B 1995 57 289-300
-
(1995)
J Roy Stat Soc B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
|