-
1
-
-
0037313182
-
Evolution of gene expression in the Drosophila melanogaster subgroup
-
Rifkin SA, Kim J, White KP (2003) Evolution of gene expression in the Drosophila melanogaster subgroup. Nat Genet 33:138-144
-
(2003)
Nat Genet
, vol.33
, pp. 138-144
-
-
Rifkin, S.A.1
Kim, J.2
White, K.P.3
-
2
-
-
0016669094
-
Evolution at two levels in humans and chimpanzees
-
King MC, Wilson AC (1975) Evolution at two levels in humans and chimpanzees. Science 188:107-116
-
(1975)
Science
, vol.188
, pp. 107-116
-
-
King, M.C.1
Wilson, A.C.2
-
3
-
-
15044364239
-
Regulatory polymorphisms underlying complex disease traits
-
Knight JC (2005) Regulatory polymorphisms underlying complex disease traits. J Mol Med 83:97-109
-
(2005)
J Mol Med
, vol.83
, pp. 97-109
-
-
Knight, J.C.1
-
4
-
-
2442496511
-
Allelic variations in gene expression
-
Yan H, Zhou W (2004) Allelic variations in gene expression. Curr Opin Oncol 16:39-43
-
(2004)
Curr Opin Oncol
, vol.16
, pp. 39-43
-
-
Yan, H.1
Zhou, W.2
-
5
-
-
0036789519
-
Variation in gene expression within and among natural populations
-
Oleksiak MF, Churchill GA, Crawford DL (2002) Variation in gene expression within and among natural populations. Nat Genet 32:261-266
-
(2002)
Nat Genet
, vol.32
, pp. 261-266
-
-
Oleksiak, M.F.1
Churchill, G.A.2
Crawford, D.L.3
-
7
-
-
0036911353
-
Interrogating a high-density SNP map for signatures of natural selection
-
Akey JM, Zhang G, Zhang K, Jin L, Shriver MD (2002) Interrogating a high-density SNP map for signatures of natural selection. Genome Res 12:1805-1814
-
(2002)
Genome Res
, vol.12
, pp. 1805-1814
-
-
Akey, J.M.1
Zhang, G.2
Zhang, K.3
Jin, L.4
Shriver, M.D.5
-
8
-
-
0037147189
-
Genetic structure of human populations
-
Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MW (2002) Genetic structure of human populations. Science 298:2381-2385
-
(2002)
Science
, vol.298
, pp. 2381-2385
-
-
Rosenberg, N.A.1
Pritchard, J.K.2
Weber, J.L.3
Cann, H.M.4
Kidd, K.K.5
Zhivotovsky, L.A.6
Feldman, M.W.7
-
9
-
-
0038818582
-
Comment on Genetic structure of human populations
-
Excoffler L, Hamilton G (2003) Comment on "Genetic structure of human populations." Science 300:1877
-
(1877)
Science
, vol.300
-
-
Excoffler, L.1
Hamilton, G.2
-
10
-
-
33747059871
-
Global transcriptional response to interferon is a determinant of HCV treatment outcome and is modified by race
-
He XS, Ji X, Hale MB, Cheung R, Ahmed A, Guo Y, Nolan GP, Pfeffer LM, Wright TL, Risch N, et al (2006) Global transcriptional response to interferon is a determinant of HCV treatment outcome and is modified by race. Hepatology 44:352-359
-
(2006)
Hepatology
, vol.44
, pp. 352-359
-
-
He, X.S.1
Ji, X.2
Hale, M.B.3
Cheung, R.4
Ahmed, A.5
Guo, Y.6
Nolan, G.P.7
Pfeffer, L.M.8
Wright, T.L.9
Risch, N.10
-
11
-
-
33644770297
-
Gene expression profiles of head and neck carcinomas from Sudanese and Norwegian patients reveal common biological pathways regardless of race and lifestyle
-
Dysvik B, Vasstrand EN, Lovlie R, Elgindi OA, Kross KW, Aarstad HJ, Johannessen AC, Jonassen I, Ibrahim SO (2006) Gene expression profiles of head and neck carcinomas from Sudanese and Norwegian patients reveal common biological pathways regardless of race and lifestyle. Clin Cancer Res 12:1109-1120
-
(2006)
Clin Cancer Res
, vol.12
, pp. 1109-1120
-
-
Dysvik, B.1
Vasstrand, E.N.2
Lovlie, R.3
Elgindi, O.A.4
Kross, K.W.5
Aarstad, H.J.6
Johannessen, A.C.7
Jonassen, I.8
Ibrahim, S.O.9
-
12
-
-
11244260808
-
Natural variation in cardiac metabolism and gene expression in fundulus heteroclitus
-
Oleksiak MF, Roach JL, Crawford DL (2005) Natural variation in cardiac metabolism and gene expression in fundulus heteroclitus. Nat Genet 37:67-72
-
(2005)
Nat Genet
, vol.37
, pp. 67-72
-
-
Oleksiak, M.F.1
Roach, J.L.2
Crawford, D.L.3
-
13
-
-
0037572260
-
Population genetic variation in genome-wide gene expression
-
Townsend JP, Cavalieri D, Hartl DL (2003) Population genetic variation in genome-wide gene expression. Mol Biol Evol 20:955-963
-
(2003)
Mol Biol Evol
, vol.20
, pp. 955-963
-
-
Townsend, J.P.1
Cavalieri, D.2
Hartl, D.L.3
-
14
-
-
0035733752
-
The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster
-
Jin W, Riley RM, Wolfinger RD, White KP, Passador-Gurgel G, Gibson G (2001) The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Nat Genet 29:389-395
-
(2001)
Nat Genet
, vol.29
, pp. 389-395
-
-
Jin, W.1
Riley, R.M.2
Wolfinger, R.D.3
White, K.P.4
Passador-Gurgel, G.5
Gibson, G.6
-
15
-
-
79959524146
-
A haplotype map of the human genome
-
The International HapMap Consortium
-
The International HapMap Consortium (2005) A haplotype map of the human genome. Nature 437:1299-1320
-
(2005)
Nature
, vol.437
, pp. 1299-1320
-
-
-
16
-
-
8844244726
-
Genetic inheritance of gene expression in human cell lines
-
Monks SA, Leonardson A, Zhu H, Cundiff P, Pietrusiak P, Edwards S, Phillips JW, Sachs A, Schadt EE (2004) Genetic inheritance of gene expression in human cell lines. Am J Hum Genet 75:1094-1105
-
(2004)
Am J Hum Genet
, vol.75
, pp. 1094-1105
-
-
Monks, S.A.1
Leonardson, A.2
Zhu, H.3
Cundiff, P.4
Pietrusiak, P.5
Edwards, S.6
Phillips, J.W.7
Sachs, A.8
Schadt, E.E.9
-
17
-
-
0037370311
-
Natural variation in human gene expression assessed in lymphoblastoid cells
-
Cheung VG, Conlin LK, Weber TM, Arcaro M, Jen KY, Morley M, Spielman RS (2003) Natural variation in human gene expression assessed in lymphoblastoid cells. Nat Genet 33:422-425
-
(2003)
Nat Genet
, vol.33
, pp. 422-425
-
-
Cheung, V.G.1
Conlin, L.K.2
Weber, T.M.3
Arcaro, M.4
Jen, K.Y.5
Morley, M.6
Spielman, R.S.7
-
18
-
-
12344280017
-
Summaries of Affymetrix GeneChip probe level data
-
Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP (2003) Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res 31:e15
-
(2003)
Nucleic Acids Res
, vol.31
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
Speed, T.P.6
-
19
-
-
0036947892
-
Robust estimators for expression analysis
-
Hubbell E, Liu WM, Mei R (2002) Robust estimators for expression analysis. Bioinformatics 18:1585-1592
-
(2002)
Bioinformatics
, vol.18
, pp. 1585-1592
-
-
Hubbell, E.1
Liu, W.M.2
Mei, R.3
-
20
-
-
85030506218
-
-
Storey JD, Dai JY, Leek JT (2006) The optimal discovery procedure for large-scale significance testing, with applications to comparative microarray experiments. Biostatistics (http:// biostatistics.oxfordjournals.org/cgi/ reprint/kxl019v1) (electronically published August 23, 2006; accessed January 10, 2007)
-
Storey JD, Dai JY, Leek JT (2006) The optimal discovery procedure for large-scale significance testing, with applications to comparative microarray experiments. Biostatistics (http:// biostatistics.oxfordjournals.org/cgi/ reprint/kxl019v1) (electronically published August 23, 2006; accessed January 10, 2007)
-
-
-
-
22
-
-
0042424602
-
Statistical significance for genome-wide studies
-
Storey JD, Tibshirani R (2003) Statistical significance for genome-wide studies. Proc Natl Acad Sci USA 100:9440-9445
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
23
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher VG, Tibshirani R, Chu G (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 98:5116-5121
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
24
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, et al (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5:R80
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
-
25
-
-
0036020892
-
A direct approach to false discovery rates
-
Storey JD (2002) A direct approach to false discovery rates. J R Stat Soc Ser B 64:479-498
-
(2002)
J R Stat Soc Ser B
, vol.64
, pp. 479-498
-
-
Storey, J.D.1
-
26
-
-
0037119584
-
Allelic variation in human gene expression
-
Yan H, Yuan W, Velculescu VE, Vogelstein B, Kinzler KW (2002) Allelic variation in human gene expression. Science 297:1143
-
(2002)
Science
, vol.297
, pp. 1143
-
-
Yan, H.1
Yuan, W.2
Velculescu, V.E.3
Vogelstein, B.4
Kinzler, K.W.5
-
27
-
-
0012789869
-
Allelic variation in gene expression is common in the human genome
-
Lo HS, Wang Z, Hu Y, Yang HH, Gere S, Buetow KH, Lee MP (2003) Allelic variation in gene expression is common in the human genome. Genome Res 13:1855-1862
-
(2003)
Genome Res
, vol.13
, pp. 1855-1862
-
-
HS, L.1
Wang, Z.2
Hu, Y.3
Yang, H.H.4
Gere, S.5
Buetow, K.H.6
Lee, M.P.7
-
28
-
-
0037623912
-
Cis-acting variation in the expression of high proportion of genes in human brain
-
Bray NJ, Buckland PR, Owens MJ, O'Donovan MC (2003) Cis-acting variation in the expression of high proportion of genes in human brain. Hum Genet 113:149-153
-
(2003)
Hum Genet
, vol.113
, pp. 149-153
-
-
Bray, N.J.1
Buckland, P.R.2
Owens, M.J.3
O'Donovan, M.C.4
-
29
-
-
0036334007
-
Small changes in expression affect predisposition to tumorigenesis
-
Yan H, Dobbie Z, Gruber SB, Markowitz S, Romans K, Giardiello FM, Kinzler KW, Vogelstein B (2002) Small changes in expression affect predisposition to tumorigenesis. Nat Genet 30:25-26
-
(2002)
Nat Genet
, vol.30
, pp. 25-26
-
-
Yan, H.1
Dobbie, Z.2
Gruber, S.B.3
Markowitz, S.4
Romans, K.5
Giardiello, F.M.6
Kinzler, K.W.7
Vogelstein, B.8
-
30
-
-
0038389841
-
A haplotype implicated in schizophrenia susceptibility is associated with reduced COMT expression in human brain
-
Bray NJ, Buckland PR, Williams NM, Williams HJ, Norton N, Owen MJ, O'Donovan MC (2003) A haplotype implicated in schizophrenia susceptibility is associated with reduced COMT expression in human brain. Am J Hum Genet 73:152-161
-
(2003)
Am J Hum Genet
, vol.73
, pp. 152-161
-
-
Bray, N.J.1
Buckland, P.R.2
Williams, N.M.3
Williams, H.J.4
Norton, N.5
Owen, M.J.6
O'Donovan, M.C.7
-
31
-
-
0037249501
-
PANTHER: A browsable database of gene products organized by biological function, using curated protein family and subfamily classification
-
Thomas PD, Kejariwal A, Campbell MJ, Mi H, Diemer K, Guo N, Ladunga I, Ulitsky-Lazareva B, Muruganujan A, Rabkin S, Vandergriff JA, Doremieux O (2003) PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification. Nucl Acids Res 31:334-341
-
(2003)
Nucl Acids Res
, vol.31
, pp. 334-341
-
-
Thomas, P.D.1
Kejariwal, A.2
Campbell, M.J.3
Mi, H.4
Diemer, K.5
Guo, N.6
Ladunga, I.7
Ulitsky-Lazareva, B.8
Muruganujan, A.9
Rabkin, S.10
Vandergriff, J.A.11
Doremieux, O.12
-
32
-
-
19444387736
-
The -374A allele of the receptor for advanced glycation end products gene is associated with a decreased risk of ischemic heart disease in African-Brazilians with type 2 diabetes
-
dos Santos KG, Canani LH, Gross JL, Tschiedel B, Pires Souto KE, Roisenberg I (2005) The -374A allele of the receptor for advanced glycation end products gene is associated with a decreased risk of ischemic heart disease in African-Brazilians with type 2 diabetes. Mol Genet Metab 85:149-156
-
(2005)
Mol Genet Metab
, vol.85
, pp. 149-156
-
-
dos Santos, K.G.1
Canani, L.H.2
Gross, J.L.3
Tschiedel, B.4
Pires Souto, K.E.5
Roisenberg, I.6
-
33
-
-
33645754224
-
Expression of endoplasmic reticulum aminopeptidases in EBV-B cell lines from healthy donors and in leukemia/lymphoma, carcinoma, and melanoma cell lines
-
Fruci D, Ferracuti S, Limongi MZ, Cunsolo V, Giorda E, Fraioli R, Sibilio L, Carroll O, Hattori A, van Endert PM, et al (2006) Expression of endoplasmic reticulum aminopeptidases in EBV-B cell lines from healthy donors and in leukemia/lymphoma, carcinoma, and melanoma cell lines. J Immunol 176:4869-4879
-
(2006)
J Immunol
, vol.176
, pp. 4869-4879
-
-
Fruci, D.1
Ferracuti, S.2
Limongi, M.Z.3
Cunsolo, V.4
Giorda, E.5
Fraioli, R.6
Sibilio, L.7
Carroll, O.8
Hattori, A.9
van Endert, P.M.10
-
34
-
-
0242273333
-
Chemokine receptor 2 (CCR2) in atherosclerosis, infectious diseases, and regulation of T-cell polarization
-
Charo IF, Peters W (2003) Chemokine receptor 2 (CCR2) in atherosclerosis, infectious diseases, and regulation of T-cell polarization. Microcirculation 10:259-264
-
(2003)
Microcirculation
, vol.10
, pp. 259-264
-
-
Charo, I.F.1
Peters, W.2
-
35
-
-
12144261536
-
RANTES G-401A polymorphism is associated with allergen sensitization and FEV1 in Chinese children
-
Leung TF, Tang NL, Lam CW, Li AM, Fung SL, Chan IH, Wong GW (2005) RANTES G-401A polymorphism is associated with allergen sensitization and FEV1 in Chinese children. Respir Med 99:216-219
-
(2005)
Respir Med
, vol.99
, pp. 216-219
-
-
Leung, T.F.1
Tang, N.L.2
Lam, C.W.3
Li, A.M.4
Fung, S.L.5
Chan, I.H.6
Wong, G.W.7
-
36
-
-
27544501017
-
Measures of human population structure show heterogeneity among genomic regions
-
Weir BS, Cardon LR, Anderson AD, Neilsen DM, Hill WG (2005) Measures of human population structure show heterogeneity among genomic regions. Genome Res 15:1468-1476
-
(2005)
Genome Res
, vol.15
, pp. 1468-1476
-
-
Weir, B.S.1
Cardon, L.R.2
Anderson, A.D.3
Neilsen, D.M.4
Hill, W.G.5
-
37
-
-
33745982917
-
The adaptor molecule Lnk negatively regulates tumor necrosis factor-α-dependent VCAM-1 expression in endothelial cells through inhibition of the ERK1 and -2 pathways
-
Fitau J, Boulday G, Coulon F, Quillard T, Charreau B (2006) The adaptor molecule Lnk negatively regulates tumor necrosis factor-α-dependent VCAM-1 expression in endothelial cells through inhibition of the ERK1 and -2 pathways. J Biol Chem 281:20148-20159
-
(2006)
J Biol Chem
, vol.281
, pp. 20148-20159
-
-
Fitau, J.1
Boulday, G.2
Coulon, F.3
Quillard, T.4
Charreau, B.5
-
39
-
-
8844227502
-
Population history and natural selection shape patterns of genetic variation in 132 genes
-
Akey JM, Eberle MA, Rieder MJ, Carlson CS, Shriver MD, Nickerson DA, Kruglyak L (2004) Population history and natural selection shape patterns of genetic variation in 132 genes. PLoS Biol 2:e286
-
(2004)
PLoS Biol
, vol.2
-
-
Akey, J.M.1
Eberle, M.A.2
Rieder, M.J.3
Carlson, C.S.4
Shriver, M.D.5
Nickerson, D.A.6
Kruglyak, L.7
-
40
-
-
30444460720
-
Global landscape of recent inferred Darwinian selection for Homo sapiens
-
Wang ET, Kodama G, Baldi P, Moyzis RK (2006) Global landscape of recent inferred Darwinian selection for Homo sapiens. Proc Natl Acad Sci USA 103:135-140
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 135-140
-
-
Wang, E.T.1
Kodama, G.2
Baldi, P.3
Moyzis, R.K.4
-
41
-
-
2342653730
-
Measuring and using admixture to study the genetics of complex diseases
-
Halder I, Shriver MD (2003) Measuring and using admixture to study the genetics of complex diseases. Hum Genomics 1:52-62
-
(2003)
Hum Genomics
, vol.1
, pp. 52-62
-
-
Halder, I.1
Shriver, M.D.2
-
42
-
-
19844365733
-
Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles
-
Gilad Y, Rifkin SA, Bertone P, Gerstein M, White KP (2005) Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles. Genome Res 15:674-680
-
(2005)
Genome Res
, vol.15
, pp. 674-680
-
-
Gilad, Y.1
Rifkin, S.A.2
Bertone, P.3
Gerstein, M.4
White, K.P.5
-
43
-
-
55449112185
-
Genome-wide associations of gene expression variation in humans
-
Stranger BE, Forrest MS, Clark AG, Minichiello MJ, Deutsch S, Lyle R, Hunt S, Kahl B, Antonarakis SE, Tavare S, et al (2005) Genome-wide associations of gene expression variation in humans. PLoS Genet 1:e78
-
(2005)
PLoS Genet
, vol.1
-
-
Stranger, B.E.1
Forrest, M.S.2
Clark, A.G.3
Minichiello, M.J.4
Deutsch, S.5
Lyle, R.6
Hunt, S.7
Kahl, B.8
Antonarakis, S.E.9
Tavare, S.10
-
45
-
-
33750200729
-
Cis-regulatory variations: A study of SNPs around genes showing cis-linkage in segregating mouse populations
-
GuhaThakurta D, Xie T, Anand M, Edwards SW, Li G, Wang SS, Schadt EE (2006) Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations. BMC Genomics 7:235
-
(2006)
BMC Genomics
, vol.7
, pp. 235
-
-
GuhaThakurta, D.1
Xie, T.2
Anand, M.3
Edwards, S.W.4
Li, G.5
Wang, S.S.6
Schadt, E.E.7
|