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Volumn 20, Issue 6, 2003, Pages 955-963

Population genetic variation in genome-wide gene expression

Author keywords

CDNA microarrays; Gene expression variation; Population genomics; Regulatory evolution; S. cerevisiae; Wine yeast

Indexed keywords

AMINO ACID METABOLISM; AMINO ACID SYNTHESIS; ARTICLE; BAYES THEOREM; COMPARATIVE GENOMIC HYBRIDIZATION; DNA MICROARRAY; FUNGUS ISOLATION; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENETIC TRAIT; GENETIC VARIABILITY; ION TRANSPORT; NONHUMAN; POPULATION GENETIC STRUCTURE; PROTEIN DEGRADATION; REVERSE TRANSCRIPTION; RNA EXTRACTION; SACCHAROMYCES CEREVISIAE; STATISTICAL ANALYSIS;

EID: 0037572260     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msg106     Document Type: Article
Times cited : (171)

References (39)
  • 1
    • 0029813691 scopus 로고    scopus 로고
    • Multicopy FZF1 (SUL1) suppresses the sulfite sensitivity but not the glucose derepression or aberrant cell morphology of a grr1 mutant of Saccharomyces cerevisiae
    • Avram, D., and A. T. Bakalinsky. 1996. Multicopy FZF1 (SUL1) suppresses the sulfite sensitivity but not the glucose derepression or aberrant cell morphology of a grr1 mutant of Saccharomyces cerevisiae. Genetics 144:511-521.
    • (1996) Genetics , vol.144 , pp. 511-521
    • Avram, D.1    Bakalinsky, A.T.2
  • 2
    • 0030883143 scopus 로고    scopus 로고
    • SSU1 encodes a plasma membrane protein with a central role in a network of proteins conferring sulfite tolerance in Saccharomyces cerevisiae
    • -. 1997, SSU1 encodes a plasma membrane protein with a central role in a network of proteins conferring sulfite tolerance in Saccharomyces cerevisiae. J. Bacteriol. 179:5971-5974.
    • (1997) J. Bacteriol. , vol.179 , pp. 5971-5974
  • 3
    • 0031850605 scopus 로고    scopus 로고
    • A nonameric core sequence is required upstream of the LYS genes of Saccharomyces cerevisiae for Lys14p-mediated activation and apparent repression by lysine
    • Becker, B., A. Feller, M. El Alami, E. Dubois, and A. Pierard. 1998. A nonameric core sequence is required upstream of the LYS genes of Saccharomyces cerevisiae for Lys14p-mediated activation and apparent repression by lysine. Mol. Microbiol. 29:151-163.
    • (1998) Mol. Microbiol. , vol.29 , pp. 151-163
    • Becker, B.1    Feller, A.2    El Alami, M.3    Dubois, E.4    Pierard, A.5
  • 4
    • 0037177625 scopus 로고    scopus 로고
    • Genetic dissection of transcriptional regulation in budding yeast
    • Brem, R. B., G. Yvert, R. Clinton, and L. Kruglyak. 2002. Genetic dissection of transcriptional regulation in budding yeast. Science 296:752-755.
    • (2002) Science , vol.296 , pp. 752-755
    • Brem, R.B.1    Yvert, G.2    Clinton, R.3    Kruglyak, L.4
  • 6
    • 0034710896 scopus 로고    scopus 로고
    • Manifold anomalies in gene expression in a vineyard isolate of Saccharomyces cerevisiae revealed by DNA microarray analysis
    • Cavalieri, D., J. P. Townsend, and D. L. Hartl. 2000. Manifold anomalies in gene expression in a vineyard isolate of Saccharomyces cerevisiae revealed by DNA microarray analysis. Proc. Natl. Acad. Sci. USA 97:12369-12374.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 12369-12374
    • Cavalieri, D.1    Townsend, J.P.2    Hartl, D.L.3
  • 7
    • 0034283844 scopus 로고    scopus 로고
    • Transcription, genomes, function
    • Cho, R. J., and M. J. Campbell. 2000. Transcription, genomes, function. Trends Genet. 16:409-415.
    • (2000) Trends Genet. , vol.16 , pp. 409-415
    • Cho, R.J.1    Campbell, M.J.2
  • 8
    • 0038195330 scopus 로고
    • Gene regulation and evolution
    • L. V. Giddings, K. Y. Kaneshiro, and W. W. Anderson, eds. Oxford University Press, New York
    • Dickinson, W. J. 1987. Gene regulation and evolution. Pp. 181-202 in L. V. Giddings, K. Y. Kaneshiro, and W. W. Anderson, eds. Genetics, speciation, and the founder principle. Oxford University Press, New York.
    • (1987) Genetics, Speciation, and the Founder Principle , pp. 181-202
    • Dickinson, W.J.1
  • 9
    • 0000713679 scopus 로고
    • The evolution of regulatory genes and patterns in Drosophila
    • -. 1991. The evolution of regulatory genes and patterns in Drosophila. Evol. Biol. 25:127-173.
    • (1991) Evol. Biol. , vol.25 , pp. 127-173
  • 10
    • 0033031437 scopus 로고    scopus 로고
    • DNA arrays for analysis of gene expression
    • Eisen, M. B., and P. O. Brown. 1999. DNA arrays for analysis of gene expression. Methods Enzymol. 303:179-205.
    • (1999) Methods Enzymol. , vol.303 , pp. 179-205
    • Eisen, M.B.1    Brown, P.O.2
  • 12
    • 0033578424 scopus 로고    scopus 로고
    • Systematic changes in gene expression patterns following adaptive evolution in yeast
    • Ferea, T. L., D. Botstein, P. O. Brown, and R. F. Rosenzweig. 1999. Systematic changes in gene expression patterns following adaptive evolution in yeast. Proc. Natl. Acad. Sci. USA 96:9721-9726.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 9721-9726
    • Ferea, T.L.1    Botstein, D.2    Brown, P.O.3    Rosenzweig, R.F.4
  • 14
    • 0023136661 scopus 로고
    • Regulatory and structural genes for lysozymes of mice
    • Hammer, M. F., and A. C. Wilson. 1987. Regulatory and structural genes for lysozymes of mice. Genetics 115:521-533.
    • (1987) Genetics , vol.115 , pp. 521-533
    • Hammer, M.F.1    Wilson, A.C.2
  • 15
    • 0033592983 scopus 로고    scopus 로고
    • Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins
    • Hardwick, J. S., F. G. Kuruvilla, J. K. Tong, A. F. Shamji, and S. L. Schreiber. 1999. Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins. Proc. Natl. Acad. Sci. USA 96:14866-14870.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 14866-14870
    • Hardwick, J.S.1    Kuruvilla, F.G.2    Tong, J.K.3    Shamji, A.F.4    Schreiber, S.L.5
  • 16
    • 0022410121 scopus 로고
    • The limits of adaptation: The evolution of selective neutrality
    • Hartl, D. L., D. E. Dykhuisen, and A. M. Dean. 1985. The limits of adaptation: the evolution of selective neutrality. Genetics 111:655-674.
    • (1985) Genetics , vol.111 , pp. 655-674
    • Hartl, D.L.1    Dykhuisen, D.E.2    Dean, A.M.3
  • 17
    • 0034616930 scopus 로고    scopus 로고
    • Functional discovery via a compendium of expression profiles
    • Hughes, T. R., M. J. Marton, A. R. Jones et al. (22 co-authors). 2000. Functional discovery via a compendium of expression profiles. Cell 102:109-126.
    • (2000) Cell , vol.102 , pp. 109-126
    • Hughes, T.R.1    Marton, M.J.2    Jones, A.R.3
  • 19
    • 0025970149 scopus 로고
    • Inferring the evolutionary histories of the Adh and Adh-dup loci in Drosophila melanogaster from patterns of polymorphism and divergence
    • Kreitman, M., and R. R. Hudson. 1991. Inferring the evolutionary histories of the Adh and Adh-dup loci in Drosophila melanogaster from patterns of polymorphism and divergence. Genetics 127:565-582.
    • (1991) Genetics , vol.127 , pp. 565-582
    • Kreitman, M.1    Hudson, R.R.2
  • 20
    • 0021979914 scopus 로고
    • Genetic variation affecting the expression of enzyme coding genes in Drosophila: An evolutionary perspective
    • Laurie-Ahlberg, C. C. 1985. Genetic variation affecting the expression of enzyme coding genes in Drosophila: an evolutionary perspective. Isozymes-Curr. T. Biol. Med. Res. 12:33-88.
    • (1985) Isozymes-Curr. T. Biol. Med. Res. , vol.12 , pp. 33-88
    • Laurie-Ahlberg, C.C.1
  • 21
    • 0020360173 scopus 로고
    • Naturally occurring enzyme activity variation in Drosophila melanogaster. I. Sources of variation for 23 enzymes
    • Laurie-Ahlberg, C. C., A. N. Wilton, J. W. Curtsinger, and T. H. Emigh. 1982. Naturally occurring enzyme activity variation in Drosophila melanogaster. I. Sources of variation for 23 enzymes. Genetics 102:191-206.
    • (1982) Genetics , vol.102 , pp. 191-206
    • Laurie-Ahlberg, C.C.1    Wilton, A.N.2    Curtsinger, J.W.3    Emigh, T.H.4
  • 22
    • 0008869910 scopus 로고
    • Regulatory genes and adaptation - Past, present, and future
    • Plenum Publishing Corporation, New York
    • Macintyre, R. J. 1982. Regulatory genes and adaptation - past, present, and future, Pp. 247-285. Evolutionary biology. Plenum Publishing Corporation, New York.
    • (1982) Evolutionary Biology , pp. 247-285
    • Macintyre, R.J.1
  • 23
    • 0021715393 scopus 로고
    • The significance of responses of the genome to challenge
    • McClintock, B. 1984. The significance of responses of the genome to challenge. Science 226:792-801.
    • (1984) Science , vol.226 , pp. 792-801
    • McClintock, B.1
  • 24
    • 0022504637 scopus 로고
    • Genealogy of principal strains of the yeast genetic stock center
    • Mortimer, R. K., and J. R. Johnston. 1986. Genealogy of principal strains of the yeast genetic stock center. Genetics 113:35-43.
    • (1986) Genetics , vol.113 , pp. 35-43
    • Mortimer, R.K.1    Johnston, J.R.2
  • 25
    • 0018624929 scopus 로고
    • Acid hydrolases as models of genetic control
    • Paigen, K. 1979. Acid hydrolases as models of genetic control. Ann. Rev. Genet. 13:417-466.
    • (1979) Ann. Rev. Genet. , vol.13 , pp. 417-466
    • Paigen, K.1
  • 26
    • 0038534071 scopus 로고
    • Gene regulation and its role in evolutionary processes
    • S. Karlin and E. Nevo, eds. Harcourt Brace Jovanovich, Orlando
    • -. 1986. Gene regulation and its role in evolutionary processes. Pp. 3-23 in S. Karlin and E. Nevo, eds. Evolutionary processes and theory. Harcourt Brace Jovanovich, Orlando.
    • (1986) Evolutionary Processes and Theory , pp. 3-23
  • 27
    • 0038371820 scopus 로고
    • Experimental approaches to the study of regulatory evolution
    • -. 1989. Experimental approaches to the study of regulatory evolution. Am. Nat. 134:440-458.
    • (1989) Am. Nat. , vol.134 , pp. 440-458
  • 29
    • 0032992818 scopus 로고    scopus 로고
    • Multiple Tymediated chromosomal translocations lead to karyotype changes in a wine strain of Saccharomyces cerevisiae
    • Rachidi, N., P. Barre, and B. Blondin. 1999. Multiple Tymediated chromosomal translocations lead to karyotype changes in a wine strain of Saccharomyces cerevisiae. Mol. Gen. Genet. 261:841-850.
    • (1999) Mol. Gen. Genet. , vol.261 , pp. 841-850
    • Rachidi, N.1    Barre, P.2    Blondin, B.3
  • 30
    • 0034251814 scopus 로고    scopus 로고
    • Evolutionary developmental biology and the problem of variation
    • Stern, D. L. 2000. Evolutionary developmental biology and the problem of variation. Evolution 54:1079-1091.
    • (2000) Evolution , vol.54 , pp. 1079-1091
    • Stern, D.L.1
  • 31
    • 0001902562 scopus 로고
    • The use of regulatory patterns in constructing phylogenies
    • Thorpe, P. A., and W. J. Dickinson. 1988. The use of regulatory patterns in constructing phylogenies. Syst. Zool. 37:97-105.
    • (1988) Syst. Zool. , vol.37 , pp. 97-105
    • Thorpe, P.A.1    Dickinson, W.J.2
  • 32
    • 0037975700 scopus 로고    scopus 로고
    • Bayesian analysis of gene expression levels: Statistical quantification of relative mRNA level across multiple treatments or samples
    • research0071.1-0071.16
    • Townsend, J. P., and D. L. Hartl. 2002. Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple treatments or samples. Genome Biol. 3: research0071.1-0071.16.
    • (2002) Genome Biol. , vol.3
    • Townsend, J.P.1    Hartl, D.L.2
  • 33
    • 0029946596 scopus 로고    scopus 로고
    • Evolutionary changes in the expression pattern of a developmentally essential gene in three Drosophila species
    • Wang, D., J. L. Marsh, and F. J. Ayala. 1996. Evolutionary changes in the expression pattern of a developmentally essential gene in three Drosophila species. Proc. Natl. Acad. Sci. USA 93:7103-7107.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 7103-7107
    • Wang, D.1    Marsh, J.L.2    Ayala, F.J.3
  • 34
    • 0022142945 scopus 로고
    • The molecular basis of evolution
    • Wilson, A. C. 1985. The molecular basis of evolution. Sci. Am. 253:164-173.
    • (1985) Sci. Am. , vol.253 , pp. 164-173
    • Wilson, A.C.1
  • 36
    • 0020426513 scopus 로고
    • Naturally occurring enzyme activity variation in Drosophila melanogaster. II. Relationships among enzymes
    • Wilton, A. N., C. C. Laurie-Ahlberg, T. H. Emigh, and J. W. Curtsinger. 1982. Naturally occurring enzyme activity variation in Drosophila melanogaster. II. Relationships among enzymes. Genetics 102:207-221.
    • (1982) Genetics , vol.102 , pp. 207-221
    • Wilton, A.N.1    Laurie-Ahlberg, C.C.2    Emigh, T.H.3    Curtsinger, J.W.4
  • 37
    • 0031460927 scopus 로고    scopus 로고
    • Functional analysis of the yeast genome
    • Winzeler, E. A., and R. W. Davis. 1997. Functional analysis of the yeast genome. Curr. Opin. Genet. Dev. 7:771-776.
    • (1997) Curr. Opin. Genet. Dev. , vol.7 , pp. 771-776
    • Winzeler, E.A.1    Davis, R.W.2
  • 38
    • 0030728763 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae ACR3 gene encodes a putative membrane protein involved in arsenite transport
    • Wysocki, R., P. Bobrowicz, and S. Ulaszewski. 1997. The Saccharomyces cerevisiae ACR3 gene encodes a putative membrane protein involved in arsenite transport. J. Biol. Chem. 272:30061-30066.
    • (1997) J. Biol. Chem. , vol.272 , pp. 30061-30066
    • Wysocki, R.1    Bobrowicz, P.2    Ulaszewski, S.3
  • 39
    • 84925824878 scopus 로고
    • Perspectives in molecular anthropology
    • S. L. Washburn, ed. Wenner-Gren Foundation for Anthropological Research, New York
    • Zuckerkandl, E. 1963. Perspectives in molecular anthropology. Pp. 243-272 in S. L. Washburn, ed. Classification and human evolution. Wenner-Gren Foundation for Anthropological Research, New York.
    • (1963) Classification and Human Evolution , pp. 243-272
    • Zuckerkandl, E.1


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