Robust estimators for expression analysis

Bioinformatics

Volumn 18, Issue 12, 2002, Pages 1585-1592

  Hubbell, Earl ^a   Liu, Wei Min ^a   Mei, Rui ^a  

^a Thermo Fisher Scientific   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANALYTICAL ERROR; ARTICLE; CONCENTRATION RESPONSE; CORRELATION ANALYSIS; CROSS HYBRIDIZATION; DNA MICROARRAY; GENE EXPRESSION; HUMAN; LINEAR SYSTEM; MATHEMATICAL COMPUTING; NONHUMAN; PRIORITY JOURNAL; STANDARD; STATISTICAL ANALYSIS; VALIDATION PROCESS;

EID: 0036947892     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/18.12.1585     Document Type: Article

References (13)

1. Box,G.P.E., Hunter,J.S. and Hunter,W.G. (1978) Statistics for Experimenters: An Introduction to Design, Data Analysis, and Model Building. Wiley, New York.
2. Cho,R.J., Campbell,M.J., Winzeler,E.A., Steinmetz,L., Conway, A., Wodicka,L., Wolfsberg,T.G., Gabrielian,A.E., Landsman,D., Lockhart,D.J. and Davis,R.W. (1998) A genome-wide transcriptional analysis of the mitotic cell cycle. Molecular Cell, 2, 65-73.
3. Hoaglin,D.C., Mosteller,F. and Tukey,J.W. (2000) Understanding Robust and Exploratory Data Analysis. Wiley, New York.
4. Hollander,M. and Wolfe,D.A. (1999) Nonparametric Statistical Methods, 2nd edition, Wiley, New York.
5. Hubbell,E., Mei,R. and Liu,W.-M. Supplemental data: Robust estimators for expression analysis. http://www.affymetrix.com/.
6. Irizarry,R.A., Hobbs,B. and Speed,T. (2001) Exploration, normalization, and summaries of high density array probe level data. Preprint.
7. Lee,M.T., Kuo,F.C. and Sklar,J. (2000) Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cdna hybridizations. Proc. Natl Acad. Sci. USA, 97, 9834-9839.
8. Li,C. and Wong,W.H. (2001) Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proc. Natl Acad. Sci. USA, 98, 31-36.
9. Little,R. and Rubin,D. (1987) Statistical Analysis with Missing Data. Wiley, New York.
10. Liu,W.M., Mei,R., Di,X., Ryder,T.B., Hubbell,E., Dee,S., Webster,T.A., Harrington,C.A., Ho,M.-h., Baid,J. and Smeekens,S. (2002) Analysis of high-density expression microarrays with signed-rank call algorithms. Bioinformatics, this issue.
11. Lockhart,D.J., Dong,H., Byrne,M.C., Follettie,M.T., Gallo,M.V., Chee,M.S., Mittmann,M., Wang,C., Kobayashi,M., Horton,H. and Brown,E.L. (1996) Expression monitoring by hybridization to high-density oligonucleotide arrays. Nature Biotechnol., 14, 1675-1680.
12. Naef,F., Lim,D.A., Patil,N. and Magnasco,M.O. (2001) From features to expression: high density oligonucleotide array analysis revisited. Preprint.
13. Wodicka,L., Dong,H., Mittmann,M., Ho,M.H. and Lockhart,D.J. (1997) Genome-wide expression monitoring in Saccharomyces cerevisiae. Nature Biotechnol., 15, 1539-1367.