-
2
-
-
0029082357
-
Synonymous substitution rate constants in Escherichia coli and Salmonella typhimurium and their relationship to gene expression and selection pressure
-
Berg OG, Martelius M (1995) Synonymous substitution rate constants in Escherichia coli and Salmonella typhimurium and their relationship to gene expression and selection pressure. J Mol Evol 41:449-456
-
(1995)
J Mol Evol
, vol.41
, pp. 449-456
-
-
Berg, O.G.1
Martelius, M.2
-
3
-
-
0030806245
-
Codon bias in Escherichia coli: The influence of codon context on mutation and selection
-
Berg OG, Suva PJN (1997) Codon bias in Escherichia coli: The influence of codon context on mutation and selection. Nucleic Acids Res 25:1397-1404
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 1397-1404
-
-
Berg, O.G.1
Suva, P.J.N.2
-
4
-
-
0031953259
-
The lacl gene as a target for mutation in transgenic rodents and Escherichia coli
-
de Boer JG, Glickman BW (1998) The lacl gene as a target for mutation in transgenic rodents and Escherichia coli. Genetics 148:1441-1451
-
(1998)
Genetics
, vol.148
, pp. 1441-1451
-
-
De Boer, J.G.1
Glickman, B.W.2
-
5
-
-
0029909632
-
The effects of variable mutation rates across sites on the phylogenetic estimation of effective population size and mutation rate of DNA sequences
-
Deng H-W, Fu Y-X (1996) The effects of variable mutation rates across sites on the phylogenetic estimation of effective population size and mutation rate of DNA sequences. Genetics 144:1271-1281
-
(1996)
Genetics
, vol.144
, pp. 1271-1281
-
-
Deng, H.-W.1
Fu, Y.-X.2
-
6
-
-
0025886466
-
A constant rate of spontaneous mutation in DNA-based microbes
-
Drake JW (1991) A constant rate of spontaneous mutation in DNA-based microbes. Proc Natl Acad Sci USA 88:7160-7164
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 7160-7164
-
-
Drake, J.W.1
-
7
-
-
0029878715
-
The close proximity of Escherichia coli genes: Consequences for stop codon and synonymous codon use
-
Eyre-Walker A (1996) The close proximity of Escherichia coli genes: consequences for stop codon and synonymous codon use. J Mol Evol 42:73-78
-
(1996)
J Mol Evol
, vol.42
, pp. 73-78
-
-
Eyre-Walker, A.1
-
8
-
-
0027432923
-
Reduced synonymous substitution rate at the start of enterobacterial genes
-
Eyre-Walker A, Bulmer M (1993) Reduced synonymous substitution rate at the start of enterobacterial genes. Nucleic Acids Res 21: 4599-4603
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 4599-4603
-
-
Eyre-Walker, A.1
Bulmer, M.2
-
9
-
-
0029027991
-
Synonymous substitution rates in enterobacteria
-
Eyre-Walker A, Bulmer M (1995) Synonymous substitution rates in enterobacteria. Genetics 140:1407-1412
-
(1995)
Genetics
, vol.140
, pp. 1407-1412
-
-
Eyre-Walker, A.1
Bulmer, M.2
-
10
-
-
0021003230
-
Estimates of DNA and protein sequence divergence: An examination of some assumptions
-
Golding GB (1983) Estimates of DNA and protein sequence divergence: an examination of some assumptions. Mol Biol Evol 1:125-142
-
(1983)
Mol Biol Evol
, vol.1
, pp. 125-142
-
-
Golding, G.B.1
-
11
-
-
0026300221
-
Spectrum of mutations that occur under selective and non-selective conditions in E. coli
-
Hall BG (1991) Spectrum of mutations that occur under selective and non-selective conditions in E. coli. Genetica 84:73-76
-
(1991)
Genetica
, vol.84
, pp. 73-76
-
-
Hall, B.G.1
-
12
-
-
0019474499
-
Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes
-
Ikemura T (1981) Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes. J Mol Biol 146:1-21
-
(1981)
J Mol Biol
, vol.146
, pp. 1-21
-
-
Ikemura, T.1
-
13
-
-
0031443647
-
Mitochondrial mutational spectra in human cells and tissues
-
Khrapko K, Coller HA, André PC, Li X-C, Hanekamp JS, Thilly WG (1997) Mitochondrial mutational spectra in human cells and tissues. Proc Natl Acad Sci USA 94:13798-13803
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 13798-13803
-
-
Khrapko, K.1
Coller, H.A.2
André, P.C.3
Li, X.-C.4
Hanekamp, J.S.5
Thilly, W.G.6
-
14
-
-
17744413756
-
Model of effectively neutral mutations in which selective constraint is incorporated
-
Kimura M (1979) Model of effectively neutral mutations in which selective constraint is incorporated. Proc Natl Acad Sci USA 76: 3440-3444
-
(1979)
Proc Natl Acad Sci USA
, vol.76
, pp. 3440-3444
-
-
Kimura, M.1
-
15
-
-
0025833762
-
Molecular considerations in the evolution of bacterial genes
-
Lawrence JG, Hartl DL, Ochman H (1991) Molecular considerations in the evolution of bacterial genes. J Mol Evol 33:241-250
-
(1991)
J Mol Evol
, vol.33
, pp. 241-250
-
-
Lawrence, J.G.1
Hartl, D.L.2
Ochman, H.3
-
17
-
-
0029925165
-
Very short patch repair: Reducing the cost of cytosine methylation
-
Lieb M, Bhagwat AS (1996) Very short patch repair: reducing the cost of cytosine methylation. Mol Microbiol 20:467-473
-
(1996)
Mol Microbiol
, vol.20
, pp. 467-473
-
-
Lieb, M.1
Bhagwat, A.S.2
-
18
-
-
0028241445
-
DNA alkylation repair limits spontaneous base substitution mutations in Escherichia coli
-
Mackay WJ, Han S, Samson LD (1994) DNA alkylation repair limits spontaneous base substitution mutations in Escherichia coli. J Bacteriol 176:3224-3230
-
(1994)
J Bacteriol
, vol.176
, pp. 3224-3230
-
-
Mackay, W.J.1
Han, S.2
Samson, L.D.3
-
19
-
-
0029973860
-
Synonymous nucleotide divergence: What is saturation?
-
Maynard Smith J, Smith NH (1996a) Synonymous nucleotide divergence: what is saturation? Genetics 142:1033-1036
-
(1996)
Genetics
, vol.142
, pp. 1033-1036
-
-
Maynard Smith, J.1
Smith, N.H.2
-
20
-
-
15844423271
-
Site-specific codon bias in bacteria
-
Maynard Smith J, Smith NH (1996b) Site-specific codon bias in bacteria. Genetics 142:1037-1043
-
(1996)
Genetics
, vol.142
, pp. 1037-1043
-
-
Maynard Smith, J.1
Smith, N.H.2
-
21
-
-
0020987951
-
Mutational specificity in bacteria
-
Miller JH (1983) Mutational specificity in bacteria. Annu Rev Genet 17:215-238
-
(1983)
Annu Rev Genet
, vol.17
, pp. 215-238
-
-
Miller, J.H.1
-
22
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3:418-426
-
(1986)
Mol Biol Evol
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
24
-
-
0029583490
-
Variation in synonymous substitution rates among mammalian genes and the correlation between synonymous and nonsynonymous divergences
-
Ohta T, Ina Y (1995) Variation in synonymous substitution rates among mammalian genes and the correlation between synonymous and nonsynonymous divergences. J Mol Evol 41:717-720
-
(1995)
J Mol Evol
, vol.41
, pp. 717-720
-
-
Ohta, T.1
Ina, Y.2
-
25
-
-
0027994615
-
Spontaneous mutation in Escherichia coli containing dnaE911 DNA polymerase antimutator allele
-
Oller AR, Schaaper RM (1994) Spontaneous mutation in Escherichia coli containing dnaE911 DNA polymerase antimutator allele. Genetics 138:263-270
-
(1994)
Genetics
, vol.138
, pp. 263-270
-
-
Oller, A.R.1
Schaaper, R.M.2
-
26
-
-
0027482444
-
Base selection, proofreading and mismatch repair during DNA replication in Escherichia coli
-
Schaaper RM (1993) Base selection, proofreading and mismatch repair during DNA replication in Escherichia coli. J Biol Chem 268: 23762-23765
-
(1993)
J Biol Chem
, vol.268
, pp. 23762-23765
-
-
Schaaper, R.M.1
-
27
-
-
0025953766
-
Spontaneous mutation in the Escherichia coli lacl gene
-
Schaaper RM, Dunn RL (1991) Spontaneous mutation in the Escherichia coli lacl gene. Genetics 129:317-326
-
(1991)
Genetics
, vol.129
, pp. 317-326
-
-
Schaaper, R.M.1
Dunn, R.L.2
-
28
-
-
0031046929
-
Evolutionary distances between nucleotide sequences based on the distribution of substitution rates among sites as estimated by parsimony
-
Tourasse NJ, Gouy M (1997) Evolutionary distances between nucleotide sequences based on the distribution of substitution rates among sites as estimated by parsimony. Mol Biol Evol 14:287-298
-
(1997)
Mol Biol Evol
, vol.14
, pp. 287-298
-
-
Tourasse, N.J.1
Gouy, M.2
-
29
-
-
0015219691
-
Fitting discrete probability distributions to evolutionary events
-
Uzzell T, Corbin KW (1971) Fitting discrete probability distributions to evolutionary events. Science 172:1089-1096
-
(1971)
Science
, vol.172
, pp. 1089-1096
-
-
Uzzell, T.1
Corbin, K.W.2
-
30
-
-
0027496790
-
Substitution rate variation among sites in hypervariable region 1 of human mitochondrial DNA
-
Wakeley J (1993) Substitution rate variation among sites in hypervariable region 1 of human mitochondrial DNA. J Mol Evol 37:613-623
-
(1993)
J Mol Evol
, vol.37
, pp. 613-623
-
-
Wakeley, J.1
-
31
-
-
0027422858
-
Mammalian gene evolution: Nucleotide sequence divergence between mouse and rat
-
Wolfe KH, Sharp PM (1993) Mammalian gene evolution: nucleotide sequence divergence between mouse and rat. J Mol Evol 37:441-456
-
(1993)
J Mol Evol
, vol.37
, pp. 441-456
-
-
Wolfe, K.H.1
Sharp, P.M.2
-
32
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
Yang Z (1994) Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol 39:306-314
-
(1994)
J Mol Evol
, vol.39
, pp. 306-314
-
-
Yang, Z.1
-
33
-
-
0029067458
-
Evaluation of several methods for estimating phylogenetic trees when substitution rates differ over nucleotide sites
-
Yang Z (1995) Evaluation of several methods for estimating phylogenetic trees when substitution rates differ over nucleotide sites. J Mol Evol 40:689-697
-
(1995)
J Mol Evol
, vol.40
, pp. 689-697
-
-
Yang, Z.1
-
34
-
-
0029970097
-
Maximum-likelihood models for combined analyses of multiple sequence data
-
Yang Z (1996) Maximum-likelihood models for combined analyses of multiple sequence data. J Mol Evol 42:587-596
-
(1996)
J Mol Evol
, vol.42
, pp. 587-596
-
-
Yang, Z.1
|