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Volumn 16, Issue 12, 2000, Pages 1131-1145

Relationship of codon bias to mRNA and concentration protein length in Saccharomyces cerevisiae

Author keywords

Codon adaptation index; Codon bias index; Effective number of codons; Frequency of optimal codons; Oligonucleotide arrays; Saccharomyces cerevisiae; Serial analysis of gene expression; Synonymous codon bias

Indexed keywords

MESSENGER RNA; OLIGONUCLEOTIDE;

EID: 0034666040     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/1097-0061(20000915)16:12<1131::AID-YEA609>3.0.CO;2-F     Document Type: Article
Times cited : (229)

References (48)
  • 1
    • 0029985179 scopus 로고    scopus 로고
    • Molecular evolution between Drosophila melanogaster and D. simulans: Reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster
    • (1996) Genetics , vol.144 , pp. 1297-1307
    • Akashi, H.1
  • 2
    • 0032011437 scopus 로고    scopus 로고
    • Getting hip to the chip
    • Anonymous
    • (1998) Nature Genet , vol.18 , pp. 195-197
  • 3
    • 0008067217 scopus 로고
    • Statistical Methods in Biology, 3rd edn. Cambridge University Press: Cambridge
    • (1995)
    • Bailey, N.T.J.1
  • 7
    • 0025286203 scopus 로고
    • The effect of context on synonymous codon usage in genes with low codon usage bias
    • (1990) Nucleic Acids Res , vol.18 , pp. 2869-2873
    • Bulmer, M.1
  • 8
    • 0008151271 scopus 로고
    • Flaws and Fallacies in Statistical Thinking, chapter 13. Prentice-Hall: Englewood Cliffs, NJ
    • (1974)
    • Campbell, S.K.1
  • 14
    • 0008023306 scopus 로고
    • The Logic of Causal Order. Sage: Beverly Hills, CA
    • (1985)
    • Davis, J.A.1
  • 16
    • 0029931535 scopus 로고    scopus 로고
    • Synonymous codor, bias is related to gene length in Escherichia coli: Selection for translational accuracy?
    • (1996) Mol Biol Evol , vol.13 , pp. 864-872
    • Eyre-Walker, A.1
  • 23
    • 0019949369 scopus 로고
    • Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs
    • (1982) J Mol Biol , vol.158 , pp. 573-597
    • Ikemura, T.1
  • 24
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • (1985) Mol Biol Evol , vol.2 , pp. 13-34
    • Ikemura, T.1
  • 25
    • 0001676366 scopus 로고
    • Strategies for efficiency and accuracy in gene expression 1. The major codon preference: A growth optimization strategy
    • (1987) Trends Biochem Sci , vol.12 , pp. 126-128
    • Kurland, C.G.1
  • 28
    • 0026709809 scopus 로고
    • Evolution of codon usage patterns: The extent and nature of divergence between Candida albicans and Saccharomyces cerevisiae
    • (1992) Nucleic Acids Res , vol.20 , pp. 5289-5295
    • Lloyd, A.T.1    Sharp, P.M.2
  • 29
    • 0020490759 scopus 로고
    • Targeted deletion of a yeast enolase structural gene. Identification and isolation of yeast enolase isozymes
    • (1982) J Biol Chem , vol.257 , pp. 7181-7188
    • McAlister, L.1    Holland, M.J.2
  • 31
    • 0032955585 scopus 로고    scopus 로고
    • Relationships between transcriptional and translational control of gene expression in Saccharomyces cerevisiae: A multiple regression analysis
    • (1999) J Mol Evol , vol.48 , pp. 133-141
    • Pavesi, A.1
  • 36
  • 37
    • 0023650543 scopus 로고
    • The codon Adaptation Index - A measure of directional synonymous codon usage bias, and its potential applications
    • (1987) Nucleic Acids Res , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 45
    • 0025318864 scopus 로고
    • The 'effective number of codons' used in a gene
    • (1990) Gene , vol.87 , pp. 23-29
    • Wright, F.1
  • 46
    • 0029970817 scopus 로고    scopus 로고
    • Maximizing transcription efficiency causes codon usage bias
    • (1996) Genetics , vol.144 , pp. 1309-1320
    • Xia, X.1
  • 47
    • 0031805147 scopus 로고    scopus 로고
    • How optimized is the translational machinery in Escherichia coli, Salmonella typhimurium and Saccharomyces cerevisiae?
    • (1998) Genetics , vol.149 , pp. 37-44
    • Xia, X.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.