메뉴 건너뛰기




Volumn 142, Issue 3, 1996, Pages 1037-1043

Site-specific codon bias in bacteria

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM; CODON; GENE MUTATION; GENE SEQUENCE; GENETIC SELECTION; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

EID: 15844423271     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (25)

References (27)
  • 1
    • 0019141646 scopus 로고
    • Nucleotide sequence of the gene ompA coding for the outer membrane protein II of Escherichia coli
    • BECK E., and E. BREMER, 1980 Nucleotide sequence of the gene ompA coding for the outer membrane protein II of Escherichia coli Nucleic Acids Res 8: 3011-3027.
    • (1980) Nucleic Acids Res , vol.8 , pp. 3011-3027
    • Beck, E.1    Bremer, E.2
  • 2
    • 0026552754 scopus 로고
    • DNA mismatch correction by Very Short Patch repair may have altered the abundance of oligonucleotides in the E. coli genome
    • BHAGWAT, A. S., and M. MCCLELLAND, 1992 DNA mismatch correction by Very Short Patch repair may have altered the abundance of oligonucleotides in the E. coli genome. Nucleic Acids Res. 20: 1663-1668.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1663-1668
    • Bhagwat, A.S.1    Mcclelland, M.2
  • 3
    • 0021873417 scopus 로고
    • Nucleotide sequence of the Escherichia coli gap gene. Different evolutionary behaviour of the NAD+ binding domain and of the catalytic domain of D-glyceraldehyde-3-phosphate dehydrogenase
    • BRANLANT, G., and C. BRANLANT, 1985 Nucleotide sequence of the Escherichia coli gap gene. Different evolutionary behaviour of the NAD+ binding domain and of the catalytic domain of D-glyceraldehyde-3-phosphate dehydrogenase. Eur. J. Biochem. 150: 61-66.
    • (1985) Eur. J. Biochem. , vol.150 , pp. 61-66
    • Branlant, G.1    Branlant, C.2
  • 4
    • 0001714012 scopus 로고
    • Multilocus structure of natural isolates of Hordeum spontaneum
    • BROWN, A. H. D., M. W. FELDMAN and E. NEVO, 1980 Multilocus structure of natural isolates of Hordeum spontaneum. Genetics 96: 523-536.
    • (1980) Genetics , vol.96 , pp. 523-536
    • Brown, A.H.D.1    Feldman, M.W.2    Nevo, E.3
  • 5
    • 84993842127 scopus 로고
    • Are codon usage patterns in unicellular organisms determined by selection-mutation balance?
    • BULMER, M., 1988 Are codon usage patterns in unicellular organisms determined by selection-mutation balance? J. Evol. Biol. 1: 15-26
    • (1988) J. Evol. Biol. , vol.1 , pp. 15-26
    • Bulmer, M.1
  • 6
    • 0025286203 scopus 로고
    • The effect of context on synonymous codon usage in genes with low codon usage bias
    • BULMER, M., 1990 The effect of context on synonymous codon usage in genes with low codon usage bias. Nucleic Acids Res. 18: 2869-2873.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 2869-2873
    • Bulmer, M.1
  • 7
    • 0025941139 scopus 로고
    • The selection-drift theory of synonymous codon usage
    • BULMER, M., 1991 The selection-drift theory of synonymous codon usage. Genetics 129: 897-907.
    • (1991) Genetics , vol.129 , pp. 897-907
    • Bulmer, M.1
  • 8
    • 0027161418 scopus 로고
    • Growth-rate-dependant accumulation of twelve tRNA species in Escherichia coli
    • EMILSSON, V., A. K. NASLUND and C. G. KURLAND, 1993 Growth-rate-dependant accumulation of twelve tRNA species in Escherichia coli. J. Mol. Biol. 230: 483-491.
    • (1993) J. Mol. Biol. , vol.230 , pp. 483-491
    • Emilsson, V.1    Naslund, A.K.2    Kurland, C.G.3
  • 9
    • 0027432923 scopus 로고
    • Reduced synonymous substitutions at the start of enterobacterial genes
    • EYRE-WALKER, A., and M. BULMER, 1993 Reduced synonymous substitutions at the start of enterobacterial genes. Nucleic Acids Res. 21: 4599-4603.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 4599-4603
    • Eyre-Walker, A.1    Bulmer, M.2
  • 10
    • 0021104781 scopus 로고
    • Cloning and molecular characterization of the ompA gene from Salmonella typhimurium
    • FREUDL, R., and S. T. COLE, 1983 Cloning and molecular characterization of the ompA gene from Salmonella typhimurium. Eur J. Biochem. 134: 497-502.
    • (1983) Eur J. Biochem. , vol.134 , pp. 497-502
    • Freudl, R.1    Cole, S.T.2
  • 11
    • 0019188794 scopus 로고
    • Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type
    • GRANTHAM, R., C. GAUTIER and M. GOUY, 1980 Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type. Nucleic Acids Res. 8: 1893-1912.
    • (1980) Nucleic Acids Res. , vol.8 , pp. 1893-1912
    • Grantham, R.1    Gautier, C.2    Gouy, M.3
  • 12
    • 0027978722 scopus 로고
    • Selection intensity for codon bias
    • HARTL, D. L., E. N. MORIYAMA and S. A. SAWYER, 1994 Selection intensity for codon bias. Genetics 138: 227-234.
    • (1994) Genetics , vol.138 , pp. 227-234
    • Hartl, D.L.1    Moriyama, E.N.2    Sawyer, S.A.3
  • 13
    • 0019824131 scopus 로고
    • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system
    • IKEMURA, T., 1981 Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translational system. J. Mol. Biol. 151: 389-409.
    • (1981) J. Mol. Biol. , vol.151 , pp. 389-409
    • Ikemura, T.1
  • 14
    • 8544282882 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • IKEMURA, T., 1985 Codon usage and tRNA content in unicellular and multicellular organisms. Mol. Biol. Evol 203: 1-13.
    • (1985) Mol. Biol. Evol , vol.203 , pp. 1-13
    • Ikemura, T.1
  • 16
    • 0025269273 scopus 로고
    • Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12
    • KOMINE, Y., T. ADACHI, H. INOKUCHI and H OZEKI, 1990 Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12. J. Mol. Biol. 212: 579-598.
    • (1990) J. Mol. Biol. , vol.212 , pp. 579-598
    • Komine, Y.1    Adachi, T.2    Inokuchi, H.3    Ozeki, H.4
  • 17
    • 0025763551 scopus 로고
    • Codon bias and gene expression
    • KURLAND, C. G., 1991 Codon bias and gene expression. FEBS Lett. 2: 165-169.
    • (1991) FEBS Lett. , vol.2 , pp. 165-169
    • Kurland, C.G.1
  • 18
    • 0025777130 scopus 로고
    • Molecular and evolutionary relationships among enteric bacteria
    • LAWRENCE, J. G., H. OCHMAN and D. L. HARTL, 1991 Molecular and evolutionary relationships among enteric bacteria. J. Gen. Microbiol. 137: 1911-1921.
    • (1991) J. Gen. Microbiol. , vol.137 , pp. 1911-1921
    • Lawrence, J.G.1    Ochman, H.2    Hartl, D.L.3
  • 19
    • 0029973860 scopus 로고    scopus 로고
    • Synonymous nucleotide divergence: What is "saturation"?
    • MAYNARD SMITH, J., and N. H SMITH, 1996 Synonymous nucleotide divergence: what is "saturation"? Genetics 142: 000-000.
    • (1996) Genetics , vol.142
    • Maynard Smith, J.1    Smith, N.H.2
  • 21
    • 0026522792 scopus 로고
    • Selection of laboratory wild-type phenotype from natural isolates of Escherichia coli in chemostats
    • MIKKOLA, R., and C. G. KURLAND, 1992 Selection of laboratory wild-type phenotype from natural isolates of Escherichia coli in chemostats. Mol. Biol. Evol. 9: 394-402.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 394-402
    • Mikkola, R.1    Kurland, C.G.2
  • 22
    • 0028051326 scopus 로고
    • Intergeneric transfer and recombination of the 6-phosphogluconate dehydrogenase gene (gnd) in enteric bacteria
    • NELSON, K., and R. K. SELANDER, 1994 Intergeneric transfer and recombination of the 6-phosphogluconate dehydrogenase gene (gnd) in enteric bacteria. Proc. Natl. Acad. Sci. USA 91: 10227-10231
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 10227-10231
    • Nelson, K.1    Selander, R.K.2
  • 23
    • 0023664163 scopus 로고
    • The effect of codon usage on the oligonucleotide composition of the E. coli genome and identification of over- and underrepresented sequences by Markov chain analysis
    • PHILLIPS, G. J., J. ARNOLD and R. IVARIE, 1987 The effect of codon usage on the oligonucleotide composition of the E. coli genome and identification of over- and underrepresented sequences by Markov chain analysis. Nucleic Acids Res 15: 2627-2638.
    • (1987) Nucleic Acids Res , vol.15 , pp. 2627-2638
    • Phillips, G.J.1    Arnold, J.2    Ivarie, R.3
  • 24
    • 0025176720 scopus 로고
    • Processes of genome evolution reflected by base frequency differences among Serratia marcescens genes
    • SHARP, P. M., 1990 Processes of genome evolution reflected by base frequency differences among Serratia marcescens genes. Mol. Microbiol. 4: 119-122.
    • (1990) Mol. Microbiol. , vol.4 , pp. 119-122
    • Sharp, P.M.1
  • 25
    • 0023650543 scopus 로고
    • The codon adaptation index-a measure of directional synonymous codon bias, and its potential applications
    • SHARP, P. M , and W. H. LI, 1987 The codon adaptation index-a measure of directional synonymous codon bias, and its potential applications. Nucleic Acids Res. 15: 1281-1295.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 27
    • 0027974102 scopus 로고
    • Molecular evolution in the gnd locus of Salmonella enterica
    • THAMPAPILLAI, G., R. LAN and P. R. REEVES, 1994 Molecular evolution in the gnd locus of Salmonella enterica. Mol. Biol. Evol. 11: 813-828.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 813-828
    • Thampapillai, G.1    Lan, R.2    Reeves, P.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.