메뉴 건너뛰기




Volumn 26, Issue 24, 2006, Pages 9256-9267

ATM and ATR pathways signal alternative splicing of Drosophila TAF1 pre-mRNA in response to DNA damage

Author keywords

[No Author keywords available]

Indexed keywords

ATM PROTEIN; ATR PROTEIN; CAMPTOTHECIN; CHECKPOINT KINASE 1; CHECKPOINT KINASE 2; DNA; DNA BINDING PROTEIN; MESSENGER RNA; MESSENGER RNA PRECURSOR; PROTEIN INHIBITOR; RNA POLYMERASE II;

EID: 33845468254     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.01125-06     Document Type: Article
Times cited : (60)

References (59)
  • 1
    • 0035449355 scopus 로고    scopus 로고
    • Cell cycle checkpoint signaling through ATM and ATR kinases
    • Abraham, R. T. 2001. Cell cycle checkpoint signaling through ATM and ATR kinases. Genes Dev. 15:2177-2196.
    • (2001) Genes Dev. , vol.15 , pp. 2177-2196
    • Abraham, R.T.1
  • 2
    • 3242882820 scopus 로고    scopus 로고
    • PI 3-kinase related kinases: 'Big' players in stress-induced signaling pathways
    • Abraham, R. T. 2004. PI 3-kinase related kinases: 'big' players in stress-induced signaling pathways. DNA Repair 3:883-887.
    • (2004) DNA Repair , vol.3 , pp. 883-887
    • Abraham, R.T.1
  • 3
    • 0032190230 scopus 로고    scopus 로고
    • AT-hook motifs identified in a wide variety of DNA-binding proteins
    • Aravind, L., and D. Landsman. 1998. AT-hook motifs identified in a wide variety of DNA-binding proteins. Nucleic Acids Res. 26:4413-4421.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 4413-4421
    • Aravind, L.1    Landsman, D.2
  • 4
    • 0033540266 scopus 로고    scopus 로고
    • Regulation of gene expression by multiple forms of TFIID and other novel TAFII-containing complexes
    • Bell, B., and L. Tora. 1999. Regulation of gene expression by multiple forms of TFIID and other novel TAFII-containing complexes. Exp. Cell Res. 246:11-19.
    • (1999) Exp. Cell Res. , vol.246 , pp. 11-19
    • Bell, B.1    Tora, L.2
  • 5
    • 0034785839 scopus 로고    scopus 로고
    • Identification of hTAF(II)80 delta links apoptotic signaling pathways to transcription factor TFIID function
    • Bell, B., E. Scheer, and L. Tora. 2001. Identification of hTAF(II)80 delta links apoptotic signaling pathways to transcription factor TFIID function. Mol. Cell 8:591-600.
    • (2001) Mol. Cell , vol.8 , pp. 591-600
    • Bell, B.1    Scheer, E.2    Tora, L.3
  • 7
    • 0034721644 scopus 로고    scopus 로고
    • Protein diversity from alternative splicing: A challenge for bioinformatics and post-genome biology
    • Black, D. L. 2000. Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology. Cell 103:367-370.
    • (2000) Cell , vol.103 , pp. 367-370
    • Black, D.L.1
  • 8
    • 0013394889 scopus 로고    scopus 로고
    • Mechanisms of alternative pre-messenger RNA splicing
    • Black, D. L. 2003. Mechanisms of alternative pre-messenger RNA splicing. Annu. Rev. Biochem. 72:291-336.
    • (2003) Annu. Rev. Biochem. , vol.72 , pp. 291-336
    • Black, D.L.1
  • 11
    • 1642540218 scopus 로고    scopus 로고
    • Drosophila melanogaster MNK/Chk2 and p53 regulate multiple DNA repair and apoptotic pathways following DNA damage
    • Brodsky, M. H., B. T. Weinert, G. Tsang, Y. S. Rong, N. M. McGinnis, K. G. Golic, D. C. Rio, and G. M. Rubin. 2004. Drosophila melanogaster MNK/Chk2 and p53 regulate multiple DNA repair and apoptotic pathways following DNA damage. Mol. Cell. Biol. 24:1219-1231.
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 1219-1231
    • Brodsky, M.H.1    Weinert, B.T.2    Tsang, G.3    Rong, Y.S.4    McGinnis, N.M.5    Golic, K.G.6    Rio, D.C.7    Rubin, G.M.8
  • 13
    • 0024284041 scopus 로고
    • Characterization and use of the Drosophila metallothionein promoter in cultured Drosophila melanogaster cells
    • Bunch, T. A., Y. Grinblat, and L. S. Goldstein. 1988. Characterization and use of the Drosophila metallothionein promoter in cultured Drosophila melanogaster cells. Nucleic Acids Res. 16:1043-1061.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 1043-1061
    • Bunch, T.A.1    Grinblat, Y.2    Goldstein, L.S.3
  • 14
    • 0028174984 scopus 로고
    • DNA topoisomerases: Essential enzymes and lethal targets
    • Chen, A. Y., and L. F. Liu. 1994. DNA topoisomerases: essential enzymes and lethal targets. Annu. Rev. Pharmacol. Toxicol. 34:191-218.
    • (1994) Annu. Rev. Pharmacol. Toxicol. , vol.34 , pp. 191-218
    • Chen, A.Y.1    Liu, L.F.2
  • 15
    • 0037125913 scopus 로고    scopus 로고
    • Transcription activation: Unveiling the essential nature of TFIID
    • Chen, B. S., and M. Hampsey. 2002. Transcription activation: unveiling the essential nature of TFIID. Curr. Biol. 12:R620-R622.
    • (2002) Curr. Biol. , vol.12
    • Chen, B.S.1    Hampsey, M.2
  • 16
    • 0021100690 scopus 로고
    • Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
    • Dignam, J. D., R. M. Lebovitz, and R. G. Roeder. 1983. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 11:1475-1489.
    • (1983) Nucleic Acids Res. , vol.11 , pp. 1475-1489
    • Dignam, J.D.1    Lebovitz, R.M.2    Roeder, R.G.3
  • 17
    • 0035252410 scopus 로고    scopus 로고
    • Alternative splicing: Increasing diversity in the proteomic world
    • Graveley, B. R. 2001. Alternative splicing: increasing diversity in the proteomic world. Trends Genet. 17:100-107.
    • (2001) Trends Genet. , vol.17 , pp. 100-107
    • Graveley, B.R.1
  • 18
    • 0024324205 scopus 로고
    • On the mechanism of topoisomerase I inhibition by camptothecin: Evidence for binding to an enzyme-DNA complex
    • Hertzberg, R. P., M. J. Caranfa, and S. M. Hecht. 1989. On the mechanism of topoisomerase I inhibition by camptothecin: evidence for binding to an enzyme-DNA complex. Biochemistry 28:4629-4638.
    • (1989) Biochemistry , vol.28 , pp. 4629-4638
    • Hertzberg, R.P.1    Caranfa, M.J.2    Hecht, S.M.3
  • 20
    • 0035871354 scopus 로고    scopus 로고
    • Developmental regulation of transcription by a tissue-specific TAF homolog
    • Hiller, M. A., T. Y. Lin, C. Wood, and M. T. Fuller. 2001. Developmental regulation of transcription by a tissue-specific TAF homolog. Genes Dev. 15:1021-1030.
    • (2001) Genes Dev. , vol.15 , pp. 1021-1030
    • Hiller, M.A.1    Lin, T.Y.2    Wood, C.3    Fuller, M.T.4
  • 21
    • 1542285166 scopus 로고    scopus 로고
    • A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae
    • Huisinga, K. L., and B. F. Pugh. 2004. A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae. Mol. Cell 13:573-585.
    • (2004) Mol. Cell , vol.13 , pp. 573-585
    • Huisinga, K.L.1    Pugh, B.F.2
  • 23
    • 18744390284 scopus 로고    scopus 로고
    • Selecting for functional alternative splices in ESTs
    • Kan, Z., D. States, and W. Gish. 2002. Selecting for functional alternative splices in ESTs. Genome Res. 12:1837-1845.
    • (2002) Genome Res. , vol.12 , pp. 1837-1845
    • Kan, Z.1    States, D.2    Gish, W.3
  • 24
    • 0034576494 scopus 로고    scopus 로고
    • The many substrates and functions of ATM
    • Kastan, M. B., and D. S. Lim. 2000. The many substrates and functions of ATM. Nat. Rev. Mol. Cell. Biol. 1:179-186.
    • (2000) Nat. Rev. Mol. Cell. Biol. , vol.1 , pp. 179-186
    • Kastan, M.B.1    Lim, D.S.2
  • 26
    • 4143115768 scopus 로고    scopus 로고
    • Characterization of the splice sites in GT-AG and GC-AG introns in higher eukaryotes using full-length cDNAs
    • Kitamura-Abe, S., H. Itoh, T. Washio, A. Tsutsumi, and M. Tomita. 2004. Characterization of the splice sites in GT-AG and GC-AG introns in higher eukaryotes using full-length cDNAs. J. Bioinform. Comput. Biol. 2:309-331.
    • (2004) J. Bioinform. Comput. Biol. , vol.2 , pp. 309-331
    • Kitamura-Abe, S.1    Itoh, H.2    Washio, T.3    Tsutsumi, A.4    Tomita, M.5
  • 27
    • 0027193609 scopus 로고
    • Drosophila 230-kD TFIID subunit, a functional homolog of the human cell cycle gene product, negatively regulates DNA binding of the TATA box-binding subunit of TFIID
    • Kokubo, T., D. W. Gong, S. Yamashita, M. Horikoshi, R. G. Roeder, and Y. Nakatani. 1993. Drosophila 230-kD TFIID subunit, a functional homolog of the human cell cycle gene product, negatively regulates DNA binding of the TATA box-binding subunit of TFIID. Genes Dev. 7:1033-1046.
    • (1993) Genes Dev. , vol.7 , pp. 1033-1046
    • Kokubo, T.1    Gong, D.W.2    Yamashita, S.3    Horikoshi, M.4    Roeder, R.G.5    Nakatani, Y.6
  • 28
    • 0038931747 scopus 로고    scopus 로고
    • Coupling of signal transduction to alternative pre-mRNA splicing by a composite splicing regulator
    • Konig, H., H. Ponta, and P. Herrlich. 1998. Coupling of signal transduction to alternative pre-mRNA splicing by a composite splicing regulator. EMBO J. 17:2904-2913.
    • (1998) EMBO J. , vol.17 , pp. 2904-2913
    • Konig, H.1    Ponta, H.2    Herrlich, P.3
  • 29
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander, E. S., et al. 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1
  • 30
    • 2342506598 scopus 로고    scopus 로고
    • TAF1 activates transcription by phosphorylation of serine 33 in histone H2B
    • Maile, T., S. Kwoczynski, R. J. Katzenberger, D. A. Wassarman, and F. Sauer. 2004. TAF1 activates transcription by phosphorylation of serine 33 in histone H2B. Science 304:1010-1014.
    • (2004) Science , vol.304 , pp. 1010-1014
    • Maile, T.1    Kwoczynski, S.2    Katzenberger, R.J.3    Wassarman, D.A.4    Sauer, F.5
  • 32
    • 0037069651 scopus 로고    scopus 로고
    • Signal-dependent regulation of splicing via phosphorylation of Sam68
    • Matter, N., P. Herrlich, and H. Konig. 2002. Signal-dependent regulation of splicing via phosphorylation of Sam68. Nature 420:691-695.
    • (2002) Nature , vol.420 , pp. 691-695
    • Matter, N.1    Herrlich, P.2    Konig, H.3
  • 33
    • 33749580447 scopus 로고    scopus 로고
    • DNA-binding properties of TAF1 isoforms with two AT-hooks
    • Metcalf, C. E., and D. A. Wassarman. 2006. DNA-binding properties of TAF1 isoforms with two AT-hooks. J. Biol. Chem. 281:30015-30023.
    • (2006) J. Biol. Chem. , vol.281 , pp. 30015-30023
    • Metcalf, C.E.1    Wassarman, D.A.2
  • 34
    • 0342723790 scopus 로고    scopus 로고
    • Frequent alternative splicing of human genes
    • Mironov, A. A., J. W. Fickett, and M. S. Gelfand. 1999. Frequent alternative splicing of human genes. Genome Res. 9:1288-1293.
    • (1999) Genome Res. , vol.9 , pp. 1288-1293
    • Mironov, A.A.1    Fickett, J.W.2    Gelfand, M.S.3
  • 35
    • 0842263778 scopus 로고    scopus 로고
    • The multicoloured world of promoter recognition complexes
    • Muller, F., and L. Tora. 2004. The multicoloured world of promoter recognition complexes. EMBO J. 23:2-8.
    • (2004) EMBO J. , vol.23 , pp. 2-8
    • Muller, F.1    Tora, L.2
  • 36
    • 33749471110 scopus 로고    scopus 로고
    • RNAi knockdown of hU2AF35 impairs cell cycle progression and modulates alternative splicing of Cdc25 transcripts
    • Pacheco, T. R., L. F. Moita, A. O. Gomes, N. Hacohen, and M. Carmo-Fonseca. 2006. RNAi knockdown of hU2AF35 impairs cell cycle progression and modulates alternative splicing of Cdc25 transcripts. Mol. Biol. Cell. 17:4187-4199.
    • (2006) Mol. Biol. Cell. , vol.17 , pp. 4187-4199
    • Pacheco, T.R.1    Moita, L.F.2    Gomes, A.O.3    Hacohen, N.4    Carmo-Fonseca, M.5
  • 37
  • 38
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl, M. W. 2001. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29:e45.
    • (2001) Nucleic Acids Res. , vol.29
    • Pfaffl, M.W.1
  • 39
    • 0032189683 scopus 로고    scopus 로고
    • Mechanism of action of eukaryotic DNA topoisomerase I and drugs targeted to the enzyme
    • Pommier, Y., P. Pourquier, Y. Fan, and D. Strumberg. 1998. Mechanism of action of eukaryotic DNA topoisomerase I and drugs targeted to the enzyme. Biochim. Biophys. Acta 1400:83-105.
    • (1998) Biochim. Biophys. Acta , vol.1400 , pp. 83-105
    • Pommier, Y.1    Pourquier, P.2    Fan, Y.3    Strumberg, D.4
  • 40
    • 0035904395 scopus 로고    scopus 로고
    • Molecular biology of HMGA proteins: Hubs of nuclear function
    • Reeves, R. 2001. Molecular biology of HMGA proteins: hubs of nuclear function. Gene 277:63-81.
    • (2001) Gene , vol.277 , pp. 63-81
    • Reeves, R.1
  • 41
    • 0031806533 scopus 로고    scopus 로고
    • RNA binding activity of heterodimeric splicing factor U2AF: At least one RS domain is required for high-affinity binding
    • Rudner, D. Z., K. S. Breger, R. Kanaar, M. D. Adams, and D. C. Rio. 1998. RNA binding activity of heterodimeric splicing factor U2AF: at least one RS domain is required for high-affinity binding. Mol. Cell. Biol. 18:4004-4011.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 4004-4011
    • Rudner, D.Z.1    Breger, K.S.2    Kanaar, R.3    Adams, M.D.4    Rio, D.C.5
  • 43
    • 0032189483 scopus 로고    scopus 로고
    • Inhibition of phosphoinositide 3-kinase related kinases by the radiosensitizing agent wortmannin
    • Sarkaria, J. N., R. S. Tibbetts, E. C. Busby, A. P. Kennedy, D. E. Hill, and R. T. Abraham. 1998. Inhibition of phosphoinositide 3-kinase related kinases by the radiosensitizing agent wortmannin. Cancer Res. 58:4375-4382.
    • (1998) Cancer Res. , vol.58 , pp. 4375-4382
    • Sarkaria, J.N.1    Tibbetts, R.S.2    Busby, E.C.3    Kennedy, A.P.4    Hill, D.E.5    Abraham, R.T.6
  • 44
    • 21244439380 scopus 로고    scopus 로고
    • Regulation of apoptosis by alternative pre-mRNA splicing
    • Schwerk, C., and K. Osthoff. 2005. Regulation of apoptosis by alternative pre-mRNA splicing. Mol. Cell 19:1-13.
    • (2005) Mol. Cell , vol.19 , pp. 1-13
    • Schwerk, C.1    Osthoff, K.2
  • 45
    • 0034710295 scopus 로고    scopus 로고
    • DNA repair in Drosophila: Insights from the Drosophila genome sequence
    • Sekelsky, J. J., M. H. Brodsky, and K. C. Burtis. 2000. DNA repair in Drosophila: insights from the Drosophila genome sequence. J. Cell Biol. 150:F31-F36.
    • (2000) J. Cell Biol. , vol.150
    • Sekelsky, J.J.1    Brodsky, M.H.2    Burtis, K.C.3
  • 46
    • 0035253615 scopus 로고    scopus 로고
    • ATM and ATR: Networking cellular responses to DNA damage
    • Shiloh, Y. 2001. ATM and ATR: networking cellular responses to DNA damage. Curr. Opin. Genet. Dev. 11:71-77.
    • (2001) Curr. Opin. Genet. Dev. , vol.11 , pp. 71-77
    • Shiloh, Y.1
  • 47
    • 4444272979 scopus 로고    scopus 로고
    • Cell signaling and the control of pre-mRNA splicing
    • Shin, C., and J. L. Manley. 2004. Cell signaling and the control of pre-mRNA splicing. Nat. Rev. Mol. Cell. Biol. 5:727-738.
    • (2004) Nat. Rev. Mol. Cell. Biol. , vol.5 , pp. 727-738
    • Shin, C.1    Manley, J.L.2
  • 48
    • 33646537438 scopus 로고    scopus 로고
    • Pre-messenger RNA processing and its regulation: A genomic perspective
    • Soller, M. 2006. Pre-messenger RNA processing and its regulation: a genomic perspective. Cell Mol. Life Sci. 63:796-819.
    • (2006) Cell Mol. Life Sci. , vol.63 , pp. 796-819
    • Soller, M.1
  • 49
    • 0036798006 scopus 로고    scopus 로고
    • Signals and their transduction pathways regulating alternative splicing: A new dimension of the human genome
    • Stamm, S. 2002. Signals and their transduction pathways regulating alternative splicing: a new dimension of the human genome. Hum. Mol. Genet. 11:2409-2416.
    • (2002) Hum. Mol. Genet. , vol.11 , pp. 2409-2416
    • Stamm, S.1
  • 51
    • 16644382782 scopus 로고    scopus 로고
    • Developmental control of growth and cell cycle progression in Drosophila
    • Swanhart, L., J. Kupsco, and R. J. Duronio. 2005. Developmental control of growth and cell cycle progression in Drosophila. Methods Mol. Biol. 296:69-94.
    • (2005) Methods Mol. Biol. , vol.296 , pp. 69-94
    • Swanhart, L.1    Kupsco, J.2    Duronio, R.J.3
  • 52
    • 0033584394 scopus 로고    scopus 로고
    • Repression of a TAF(II)32 isoform as part of a program of genes regulated during mpl ligand-induced megakaryocyte differentiation
    • Thompson, A., and K. Ravid. 1999. Repression of a TAF(II)32 isoform as part of a program of genes regulated during mpl ligand-induced megakaryocyte differentiation. Biochem. Biophys. Res. Commun. 262:55-59.
    • (1999) Biochem. Biophys. Res. Commun. , vol.262 , pp. 55-59
    • Thompson, A.1    Ravid, K.2
  • 53
    • 0037087628 scopus 로고    scopus 로고
    • A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription
    • Tora, L. 2002. A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription. Genes Dev. 16:673-675.
    • (2002) Genes Dev. , vol.16 , pp. 673-675
    • Tora, L.1
  • 56
    • 0034839274 scopus 로고    scopus 로고
    • TAF(II)250: A transcription toolbox
    • Wassarman, D. A., and F. Sauer. 2001. TAF(II)250: a transcription toolbox. J. Cell Sci. 114:2895-2902.
    • (2001) J. Cell Sci. , vol.114 , pp. 2895-2902
    • Wassarman, D.A.1    Sauer, F.2
  • 57
    • 0035421277 scopus 로고    scopus 로고
    • Regulation of alternative pre-mRNA splicing by the ERK MAP-kinase pathway
    • Weg-Remers, S., H. Ponta, P. Herrlich, and H. Konig. 2001. Regulation of alternative pre-mRNA splicing by the ERK MAP-kinase pathway. EMBO J. 20:4194-4203.
    • (2001) EMBO J. , vol.20 , pp. 4194-4203
    • Weg-Remers, S.1    Ponta, H.2    Herrlich, P.3    Konig, H.4
  • 58
    • 0027402317 scopus 로고
    • Largest subunit of Drosophila transcription factor IID directs assembly of a complex containing TBP and a coactivator
    • Weinzierl, R. O., B. D. Dynlacht, and R. Tjian. 1993. Largest subunit of Drosophila transcription factor IID directs assembly of a complex containing TBP and a coactivator. Nature 362:511-517.
    • (1993) Nature , vol.362 , pp. 511-517
    • Weinzierl, R.O.1    Dynlacht, B.D.2    Tjian, R.3
  • 59
    • 27644471534 scopus 로고    scopus 로고
    • Cyclic AMP-dependent modification of gonad-selective TAF(II)105 in a human ovarian granulosa cell line
    • Wu, Y., Y. Lu, Y. Hu, and R. Li. 2005. Cyclic AMP-dependent modification of gonad-selective TAF(II)105 in a human ovarian granulosa cell line. J. Cell. Biochem. 96:751-759.
    • (2005) J. Cell. Biochem. , vol.96 , pp. 751-759
    • Wu, Y.1    Lu, Y.2    Hu, Y.3    Li, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.