-
1
-
-
0033887479
-
Designed sequence-specific minor groove ligands
-
Wemmer, D. E. (2000) Designed sequence-specific minor groove ligands, Annu. Rev. Biophys. Biomol. Struct. 29, 439-461.
-
(2000)
Annu. Rev. Biophys. Biomol. Struct.
, vol.29
, pp. 439-461
-
-
Wemmer, D.E.1
-
2
-
-
0032170961
-
Sequence-specific DNA minor groove binders. Design and synthesis of netropsin and distamycin analogues
-
Bailly, C., and Chaires, J. B. (1998) Sequence-specific DNA minor groove binders. Design and synthesis of netropsin and distamycin analogues, Bioconjugate Chem. 9, 513-538.
-
(1998)
Bioconjugate Chem.
, vol.9
, pp. 513-538
-
-
Bailly, C.1
Chaires, J.B.2
-
3
-
-
0034830898
-
Molecular recognition of DNA by small molecules
-
Dervan, P. B. (2001) Molecular recognition of DNA by small molecules, Bioorg. Med. Chem. 9, 2215-2235.
-
(2001)
Bioorg. Med. Chem.
, vol.9
, pp. 2215-2235
-
-
Dervan, P.B.1
-
4
-
-
0344874246
-
Therapeutic modulation of endogenous gene function by agents with designed DNA-sequence specificities
-
Uil, T. G., Haisma, H. J., and Rots, M. G. (2003) Therapeutic modulation of endogenous gene function by agents with designed DNA-sequence specificities, Nucleic Acids Res. 31, 6064-6078.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6064-6078
-
-
Uil, T.G.1
Haisma, H.J.2
Rots, M.G.3
-
5
-
-
0037832279
-
Recognition of the DNA minor groove by pyrrole-imidazole polyamides
-
Dervan, P. B., and Edelson, B. S. (2003) Recognition of the DNA minor groove by pyrrole-imidazole polyamides, Curr. Opin. Struct. Biol. 13, 284-299.
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 284-299
-
-
Dervan, P.B.1
Edelson, B.S.2
-
6
-
-
3843142798
-
Regulation of gene expression with pyrrole-imidazole polyamides
-
Melander, C., Burnett, R., and Gottesfeld, J. M. (2004) Regulation of gene expression with pyrrole-imidazole polyamides, J. Biotechnol. 112, 195-220.
-
(2004)
J. Biotechnol.
, vol.112
, pp. 195-220
-
-
Melander, C.1
Burnett, R.2
Gottesfeld, J.M.3
-
7
-
-
14944342616
-
DNA damage effects of a polyamide-CBI conjugate in SV40 virions
-
Philips, B. J., Chang, A. Y., Dervan, P. B., and Beerman, T. A. (2005) DNA damage effects of a polyamide-CBI conjugate in SV40 virions, Mol. Pharmacol. 67, 877-882.
-
(2005)
Mol. Pharmacol.
, vol.67
, pp. 877-882
-
-
Philips, B.J.1
Chang, A.Y.2
Dervan, P.B.3
Beerman, T.A.4
-
8
-
-
28444464493
-
Sequence-specific fluorescence detection of DNA by polyamide-thiazole orange conjugates
-
Fechter, E. J., Olenyuk, B., and Dervan, P. B. (2005) Sequence-specific fluorescence detection of DNA by polyamide-thiazole orange conjugates, J. Am. Chem. Soc. 127, 16685-16691.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 16685-16691
-
-
Fechter, E.J.1
Olenyuk, B.2
Dervan, P.B.3
-
9
-
-
0032824901
-
Structural studies of atom-specific anticancer drugs acting on DNA
-
Yang, X.-L., and Wang, A. H.-J. (1999) Structural studies of atom-specific anticancer drugs acting on DNA, Pharmacol. Ther. 83, 181-215.
-
(1999)
Pharmacol. Ther.
, vol.83
, pp. 181-215
-
-
Yang, X.-L.1
Wang, A.H.-J.2
-
10
-
-
0033230137
-
Imidazole-imidazole pair as a minor groove recognition motif for T:G mismatched base pairs
-
Yang, X.-L., Hubbard, R. B., Lee, M., Tao, Z.-F., Sugiyama, H., and Wang, A. H.-J. (1999) Imidazole-imidazole pair as a minor groove recognition motif for T:G mismatched base pairs, Nucleic Acids Res. 27, 4183-4190.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4183-4190
-
-
Yang, X.-L.1
Hubbard, R.B.2
Lee, M.3
Tao, Z.-F.4
Sugiyama, H.5
Wang, A.H.-J.6
-
11
-
-
2342652808
-
Molecular recognition of the nucleosomal "supergroove"
-
Edayathumangalam, R. S., Weyermann, P., Gottesfeld, J. M., Dervan, P. B., and Luger, K. (2004) Molecular recognition of the nucleosomal "supergroove", Proc. Natl. Acad. Sci. U.S.A. 101, 6864-6869.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 6864-6869
-
-
Edayathumangalam, R.S.1
Weyermann, P.2
Gottesfeld, J.M.3
Dervan, P.B.4
Luger, K.5
-
12
-
-
9644289436
-
Nucleosomes in solution exist as a mixture of twist-defect states
-
Edayathumangalam, R. S., Weyermann, P., Dervan, P. B., Gottesfeld, J. M., and Luger, K. (2005) Nucleosomes in solution exist as a mixture of twist-defect states, J. Mol. Biol. 345, 103-114.
-
(2005)
J. Mol. Biol.
, vol.345
, pp. 103-114
-
-
Edayathumangalam, R.S.1
Weyermann, P.2
Dervan, P.B.3
Gottesfeld, J.M.4
Luger, K.5
-
13
-
-
0001015292
-
Structural characterization of a 2:1 distamycin A·d(CGCAAATTGGC) complex by two-dimensional NMR
-
Pelton, J. G., and Wemmer, D. E. (1989) Structural characterization of a 2:1 distamycin A·d(CGCAAATTGGC) complex by two-dimensional NMR, Proc. Natl Acad. Sci. U.S.A. 86, 5723-5727.
-
(1989)
Proc. Natl Acad. Sci. U.S.A.
, vol.86
, pp. 5723-5727
-
-
Pelton, J.G.1
Wemmer, D.E.2
-
15
-
-
0021959842
-
The molecular origin of DNA-drug specificity in netropsin and distamycin
-
Kopka, M. L., Yoon, C., Goodsell, D., Pjura, P., and Dickerson, R. E. (1985) The molecular origin of DNA-drug specificity in netropsin and distamycin, Proc. Natl. Acad. Sci. U.S.A. 82, 1376-1380.
-
(1985)
Proc. Natl. Acad. Sci. U.S.A.
, vol.82
, pp. 1376-1380
-
-
Kopka, M.L.1
Yoon, C.2
Goodsell, D.3
Pjura, P.4
Dickerson, R.E.5
-
16
-
-
0026661689
-
Antiparallel side-by-side dimeric motif for sequence-specific recognition in the minor groove of DNA by the designed peptide 1-methylimidazole-2- carboxamide netropsin
-
Mrksich, M., Wade, W. S., Dwyer, T. J., Geierstanger, B. H., Wemmer, D. E., and Dervan, P. B. (1992) Antiparallel side-by-side dimeric motif for sequence-specific recognition in the minor groove of DNA by the designed peptide 1-methylimidazole-2-carboxamide netropsin, Proc. Natl. Acad. Sci. U.S.A. 89, 7586-7590.
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 7586-7590
-
-
Mrksich, M.1
Wade, W.S.2
Dwyer, T.J.3
Geierstanger, B.H.4
Wemmer, D.E.5
Dervan, P.B.6
-
17
-
-
0026700019
-
Design and binding of a distamycin A analog to d(CGCAAGTTGGC) ·d(GCCAACTTGCG): Synthesis, NMR studies, and implications for the design of sequence-specific minor groove binding oligopeptides
-
Dwyer, T. J., Geierstanger, B. H., Bathini, Y., Lown, J. W., and Wemmer, D. E. (1992) Design and binding of a distamycin A analog to d(CGCAAGTTGGC) ·d(GCCAACTTGCG): Synthesis, NMR studies, and implications for the design of sequence-specific minor groove binding oligopeptides, J. Am. Chem. Soc. 114, 5911-5919.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 5911-5919
-
-
Dwyer, T.J.1
Geierstanger, B.H.2
Bathini, Y.3
Lown, J.W.4
Wemmer, D.E.5
-
18
-
-
0342987251
-
Design of peptides that bind in the minor groove of DNA at 5′-(A,T)G-(A,T)C(A,T)-3′ sequences by a dimeric side-by-side motif
-
Wade, W. S., Mrksich, M., and Dervan, P. B. (1992) Design of peptides that bind in the minor groove of DNA at 5′-(A,T)G-(A,T)C(A,T)-3′ sequences by a dimeric side-by-side motif, J Am. Chem. Soc. 114, 8783-8794.
-
(1992)
J Am. Chem. Soc.
, vol.114
, pp. 8783-8794
-
-
Wade, W.S.1
Mrksich, M.2
Dervan, P.B.3
-
19
-
-
0022858456
-
Molecular recognition between oligopeptides and nucleic acids: Novel imidazole-containing oligopeptides related to netropsin that exhibit altered DNA sequence specificity
-
Lown, J. W., Krowicki, K., Bhat, U. G., Skorobogaty, A., Ward, B., and Dabrowiak, J. C. (1986) Molecular recognition between oligopeptides and nucleic acids: Novel imidazole-containing oligopeptides related to netropsin that exhibit altered DNA sequence specificity, Biochemistry 25, 7408-7416.
-
(1986)
Biochemistry
, vol.25
, pp. 7408-7416
-
-
Lown, J.W.1
Krowicki, K.2
Bhat, U.G.3
Skorobogaty, A.4
Ward, B.5
Dabrowiak, J.C.6
-
20
-
-
0023648332
-
Molecular recognition between oligopeptides and nucleic acids. Monocationic imidazole lexitropsins that display enhanced GC sequence dependent DNA binding
-
Kissinger, K., Krowicki, K., Dabrowiak, J. C., and Lown, J. W. (1987) Molecular recognition between oligopeptides and nucleic acids. Monocationic imidazole lexitropsins that display enhanced GC sequence dependent DNA binding, Biochemistry 26, 5590-5595.
-
(1987)
Biochemistry
, vol.26
, pp. 5590-5595
-
-
Kissinger, K.1
Krowicki, K.2
Dabrowiak, J.C.3
Lown, J.W.4
-
21
-
-
0032576722
-
Recognition of the four Watson-Crick base pairs in the DNA minor groove by synthetic ligands
-
White, S., Szewczyk, J. W., Turner, J. M., Baird, E. E., and Dervan, P. B. (1998) Recognition of the four Watson-Crick base pairs in the DNA minor groove by synthetic ligands, Nature 391, 468-471.
-
(1998)
Nature
, vol.391
, pp. 468-471
-
-
White, S.1
Szewczyk, J.W.2
Turner, J.M.3
Baird, E.E.4
Dervan, P.B.5
-
22
-
-
4143091493
-
Expanding the repertoire of heterocycle ring pairs for programmable minor groove DNA recognition
-
Marques, M. A., Doss, R. M., Foister, S., and Dervan, P. B. (2004) Expanding the repertoire of heterocycle ring pairs for programmable minor groove DNA recognition, J. Am. Chem. Soc. 126, 10339-10349.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 10339-10349
-
-
Marques, M.A.1
Doss, R.M.2
Foister, S.3
Dervan, P.B.4
-
23
-
-
0037687485
-
Imidazopyridine/pyrrole and hydroxybenzimidazole/pyrrole pairs for DNA minor groove recognition
-
Renneberg, D., and Dervan, P. B. (2003) Imidazopyridine/Pyrrole and Hydroxybenzimidazole/Pyrrole Pairs for DNA Minor Groove Recognition, J Am. Chem. Soc. 125, 5707-5716.
-
(2003)
J Am. Chem. Soc.
, vol.125
, pp. 5707-5716
-
-
Renneberg, D.1
Dervan, P.B.2
-
24
-
-
0037471666
-
Hydration of hydroxypyrrole influences binding of ImHpPyPy-β-Dp polyamide to DNA
-
Wellenzohn, B., Loferer, M. J., Trieb, M., Rauch, C., Winger, R. H., Mayer, E., and Liedl, K. R. (2003) Hydration of hydroxypyrrole influences binding of ImHpPyPy-β-Dp polyamide to DNA, J. Am. Chem. Soc. 125, 1088-1095.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 1088-1095
-
-
Wellenzohn, B.1
Loferer, M.J.2
Trieb, M.3
Rauch, C.4
Winger, R.H.5
Mayer, E.6
Liedl, K.R.7
-
25
-
-
0034671363
-
Discrimination of A/T sequences in the minor groove of DNA within a cyclic polyamide motif
-
Melander, C., Herman, D. M., and Dervan, P. B. (2000) Discrimination of A/T sequences in the minor groove of DNA within a cyclic polyamide motif, Chem.-Eur. J. 6, 4487-4497.
-
(2000)
Chem.-Eur. J.
, vol.6
, pp. 4487-4497
-
-
Melander, C.1
Herman, D.M.2
Dervan, P.B.3
-
26
-
-
0037088987
-
Recognition of T*G mismatched base pairs in DNA by stacked imidazole-containing polyamides: Surface plasmon resonance and circular dichroism studies
-
Lacy, E. R., Cox, K. K., Wilson, W. D., and Lee, M. (2002) Recognition of T*G mismatched base pairs in DNA by stacked imidazole-containing polyamides: Surface plasmon resonance and circular dichroism studies, Nucleic Acids Res. 30, 1834-1841.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1834-1841
-
-
Lacy, E.R.1
Cox, K.K.2
Wilson, W.D.3
Lee, M.4
-
27
-
-
19944432385
-
Extending the language of DNA molecular recognition by polyamides: Unexpected influence of imidazole and pyrrole arrangement on binding affinity and specificity
-
Buchmueller, K. L., Staples, A. M., Howard, C. M., Horick, S. M., Uthe, P. B., Le, N. M., Cox, K. K., Nguyen, B., Pacheco, K. A. O., Wilson, W. D., and Lee, M. (2005) Extending the Language of DNA Molecular Recognition by Polyamides: Unexpected Influence of Imidazole and Pyrrole Arrangement on Binding Affinity and Specificity, J. Am. Chem. Soc. 127, 742-750.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 742-750
-
-
Buchmueller, K.L.1
Staples, A.M.2
Howard, C.M.3
Horick, S.M.4
Uthe, P.B.5
Le, N.M.6
Cox, K.K.7
Nguyen, B.8
Pacheco, K.A.O.9
Wilson, W.D.10
Lee, M.11
-
28
-
-
0037070562
-
Influence of a terminal formamido group on the sequence recognition of DNA by polyamides
-
Lacy, E. R., Le, N. M., Price, C. A., Lee, M., and Wilson, W. D. (2002) Influence of a Terminal Formamido Group on the Sequence Recognition of DNA by Polyamides, J. Am. Chem. Soc. 124, 2153-2163.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 2153-2163
-
-
Lacy, E.R.1
Le, N.M.2
Price, C.A.3
Lee, M.4
Wilson, W.D.5
-
29
-
-
13844315675
-
Molecular recognition of DNA base pairs by the formamido/pyrrole and formamido/imidazole pairings in stacked polyamides
-
Buchmueller, K. L., Staples, A. M., Uthe, P. B., Howard, C. M., Pacheco, K. A. O., Cox, K. K., Henry, J. A., Bailey, S. L., Horick, S. M., Nguyen, B., Wilson, W. D., and Lee, M. (2005) Molecular recognition of DNA base pairs by the formamido/pyrrole and formamido/imidazole pairings in stacked polyamides, Nucleic Acids Res. 35, 912-921.
-
(2005)
Nucleic Acids Res.
, vol.35
, pp. 912-921
-
-
Buchmueller, K.L.1
Staples, A.M.2
Uthe, P.B.3
Howard, C.M.4
Pacheco, K.A.O.5
Cox, K.K.6
Henry, J.A.7
Bailey, S.L.8
Horick, S.M.9
Nguyen, B.10
Wilson, W.D.11
Lee, M.12
-
30
-
-
0032319019
-
Theoretical aspects of isothermal titration calorimetry
-
Indyk, L., and Fisher, H. F. (1998) Theoretical aspects of isothermal titration calorimetry, Methods Enzymol. 295, 350-364.
-
(1998)
Methods Enzymol.
, vol.295
, pp. 350-364
-
-
Indyk, L.1
Fisher, H.F.2
-
31
-
-
48749149745
-
Solvent suppression in Fourier-transform nuclear magnetic-resonance
-
Hore, P. J. (1983) Solvent suppression in Fourier-transform nuclear magnetic-resonance, J. Magn. Reson. 55, 283-300.
-
(1983)
J. Magn. Reson.
, vol.55
, pp. 283-300
-
-
Hore, P.J.1
-
32
-
-
0346957933
-
Nuclear magnetic resonance spectroscopy in biochemistry
-
Cheatham, S. (1989) Nuclear magnetic resonance spectroscopy in biochemistry, J. Chem. Educ. 66, 111-117.
-
(1989)
J. Chem. Educ.
, vol.66
, pp. 111-117
-
-
Cheatham, S.1
-
34
-
-
0020787167
-
Sequence dependence of base-pair stacking in right-handed DNA in solution: Proton nuclear Overhauser effect NMR measurements
-
Patel, D. J., Kozlowski, S. A., and Bhatt, R. (1983) Sequence dependence of base-pair stacking in right-handed DNA in solution: Proton nuclear Overhauser effect NMR measurements, Proc. Natl. Acad. Sci. U.S.A. 80, 3908-3912.
-
(1983)
Proc. Natl. Acad. Sci. U.S.A.
, vol.80
, pp. 3908-3912
-
-
Patel, D.J.1
Kozlowski, S.A.2
Bhatt, R.3
-
35
-
-
23444454552
-
The Amber biomolecular simulation programs
-
Case, D. A., Cheatham, T. E., III, Darden, T., Gohlke, H., Luo, R., Merz, K. M., Jr., Onufriev, A., Simmerling, C., Wang, B., and Woods, R. J. (2005) The Amber biomolecular simulation programs, J. Comput. Chem. 26, 1668-1688.
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham III, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz Jr., K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
36
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W., and Klein, M. L. (1983) Comparison of simple potential functions for simulating liquid water, J. Chem. Phys. 79, 926-935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
37
-
-
0034807859
-
Complex of B-DNA with polyamides freezes DNA backbone flexibility
-
Wellenzohn, B., Flader, W., Winger, R. H., Hallbrucker, A., Mayer, E., and Liedl, K. R. (2001) Complex of B-DNA with Polyamides Freezes DNA Backbone Flexibility, J. Am. Chem. Soc. 123, 5044-5049.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 5044-5049
-
-
Wellenzohn, B.1
Flader, W.2
Winger, R.H.3
Hallbrucker, A.4
Mayer, E.5
Liedl, K.R.6
-
38
-
-
0037134592
-
2 B-DNA decamer and its complex with two polyamides
-
2 B-DNA Decamer and Its Complex with Two Polyamides, J. Phys. Chem. B 105, 3135-3142.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 3135-3142
-
-
Wellenzohn, B.1
Flader, W.2
Winger, R.H.3
Hallbrucker, A.4
Mayer, E.5
Liedl, K.R.6
-
39
-
-
0034802485
-
Influence of the dynamic positions of cations on the structure of the DNA minor groove: Sequence-dependent effects
-
Hamelberg, D., Williams, L. D., and Wilson, W. D. (2001) Influence of the Dynamic Positions of Cations on the Structure of the DNA Minor Groove: Sequence-Dependent Effects, J. Am. Chem. Soc. 123, 7745-7755.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 7745-7755
-
-
Hamelberg, D.1
Williams, L.D.2
Wilson, W.D.3
-
40
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls, A., Sharp, K. A., and Honig, B. (1991) Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons, Proteins 11, 281-296.
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
41
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
Cornell, W. D., Cieplak, P., Bayly, C. I., Gould, I. R., Merz, K. M., Jr., Ferguson, D. M., Spellmeyer, D. C., Fox, T., Caldwell, J. W., and Kollman, P. A. (1995) A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules, J. Am. Chem. Soc. 117, 5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz Jr., K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
42
-
-
33645768556
-
Binding-linked protonation of a DNA minor-groove agent
-
Nguyen, B., Stanek, J., and Wilson, W. D. (2006) Binding-linked protonation of a DNA minor-groove agent, Biophys. J. 90, 1319-1328.
-
(2006)
Biophys. J.
, vol.90
, pp. 1319-1328
-
-
Nguyen, B.1
Stanek, J.2
Wilson, W.D.3
-
43
-
-
0025906146
-
Contribution to the thermodynamics of protein folding from the reduction in water-accessible nonpolar surface area
-
Livingstone, J. R., Spolar, R. S., and Record, M. T., Jr. (1991) Contribution to the thermodynamics of protein folding from the reduction in water-accessible nonpolar surface area, Biochemistry 30, 4237-4244.
-
(1991)
Biochemistry
, vol.30
, pp. 4237-4244
-
-
Livingstone, J.R.1
Spolar, R.S.2
Record Jr., M.T.3
-
44
-
-
0000866128
-
Hydrophobic effect in protein folding and other noncovalent processes involving proteins
-
Spolar, R. S., Ha, J.-H., and Record, M. T., Jr. (1989) Hydrophobic effect in protein folding and other noncovalent processes involving proteins, Proc. Natl. Acad. Sci. U.S.A. 86, 8382-8385.
-
(1989)
Proc. Natl. Acad. Sci. U.S.A.
, vol.86
, pp. 8382-8385
-
-
Spolar, R.S.1
Ha, J.-H.2
Record Jr., M.T.3
-
45
-
-
0026684671
-
Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water
-
Spolar, R. S., Livingstone, J. R., and Record, M. T., Jr. (1992) Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water, Biochemistry 31, 3947-3955.
-
(1992)
Biochemistry
, vol.31
, pp. 3947-3955
-
-
Spolar, R.S.1
Livingstone, J.R.2
Record Jr., M.T.3
-
46
-
-
23444450909
-
Coupling of local folding to site-specific binding of proteins to DNA
-
Spolar, R. S., and Record, M. T., Jr. (1994) Coupling of local folding to site-specific binding of proteins to DNA, Science 263, 777-784.
-
(1994)
Science
, vol.263
, pp. 777-784
-
-
Spolar, R.S.1
Record Jr., M.T.2
-
47
-
-
0029080864
-
Thermodynamic mapping of the inhibitor site of the aspartic protease endothiapepsin
-
Gomez, J., and Freire, E. (1995) Thermodynamic mapping of the inhibitor site of the aspartic protease endothiapepsin, J. Mol. Biol. 252, 337-350.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 337-350
-
-
Gomez, J.1
Freire, E.2
-
48
-
-
0029114703
-
The heat capacity of proteins
-
Gomez, J., Hilser, V. J., Xie, D., and Freire, E. (1995) The heat capacity of proteins, Proteins 22, 404-412.
-
(1995)
Proteins
, vol.22
, pp. 404-412
-
-
Gomez, J.1
Hilser, V.J.2
Xie, D.3
Freire, E.4
-
49
-
-
0026756702
-
Thermodynamics of structural stability and cooperative folding behavior in proteins
-
Murphy, K. P., and Freire, E. (1992) Thermodynamics of structural stability and cooperative folding behavior in proteins, Adv. Protein Chem. 43, 313-361.
-
(1992)
Adv. Protein Chem.
, vol.43
, pp. 313-361
-
-
Murphy, K.P.1
Freire, E.2
-
50
-
-
0029941271
-
Energetics of hydrogen bonding in proteins: A model compound study
-
Habermann, S. M., and Murphy, K. P. (1996) Energetics of hydrogen bonding in proteins: A model compound study, Protein Sci. 5 1229-1239.
-
(1996)
Protein Sci.
, vol.5
, pp. 1229-1239
-
-
Habermann, S.M.1
Murphy, K.P.2
-
51
-
-
0026649261
-
Molecular basis of co-operativity in protein folding. III. Structural identification of cooperative folding units and folding intermediates
-
Murphy, K. P., Bhakuni, V., Xie, D., and Freire, E. (1992) Molecular basis of co-operativity in protein folding. III. Structural identification of cooperative folding units and folding intermediates, J. Mol. Biol. 227, 293-306.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 293-306
-
-
Murphy, K.P.1
Bhakuni, V.2
Xie, D.3
Freire, E.4
-
52
-
-
0034713855
-
Energetics of DNA intercalation reactions
-
Ren, J., Jenkins, T. C., and Chaires, J. B. (2000) Energetics of DNA intercalation reactions, Biochemistry 39, 8439-8447.
-
(2000)
Biochemistry
, vol.39
, pp. 8439-8447
-
-
Ren, J.1
Jenkins, T.C.2
Chaires, J.B.3
-
53
-
-
0034616955
-
A thermodynamic and structural analysis of DNA minor-groove complex formation
-
Mazur, S., Tanious, F. A., Ding, D., Kumar, A., Boykin, D. W., Simpson, I. J., Neidle, S., and Wilson, W. D. (2000) A thermodynamic and structural analysis of DNA minor-groove complex formation, J. Mol. Biol. 300, 321-337.
-
(2000)
J. Mol. Biol.
, vol.300
, pp. 321-337
-
-
Mazur, S.1
Tanious, F.A.2
Ding, D.3
Kumar, A.4
Boykin, D.W.5
Simpson, I.J.6
Neidle, S.7
Wilson, W.D.8
-
54
-
-
0033955735
-
Advances in surface plasmon resonance biosensor analysis
-
Rich, R. L., and Myszka, D. G. (2000) Advances in surface plasmon resonance biosensor analysis, Curr. Opin. Biotechnol. 11, 54-61.
-
(2000)
Curr. Opin. Biotechnol.
, vol.11
, pp. 54-61
-
-
Rich, R.L.1
Myszka, D.G.2
-
55
-
-
0033179346
-
Binding of AR-1-144, a tri-imidazole DNA minor groove binder, to CCGG sequence analyzed by NMR spectroscopy
-
Yang, X.-L., Kaenzig, C., Lee, M., and Wang, A. H.-J. (1999) Binding of AR-1-144, a tri-imidazole DNA minor groove binder, to CCGG sequence analyzed by NMR spectroscopy, Eur. J. Biochem. 263, 646-655.
-
(1999)
Eur. J. Biochem.
, vol.263
, pp. 646-655
-
-
Yang, X.-L.1
Kaenzig, C.2
Lee, M.3
Wang, A.H.-J.4
-
56
-
-
33747802145
-
A thermodynamic signature for drug-DNA binding modes
-
Chaires, J. B. (2006) A thermodynamic signature for drug-DNA binding modes, Arch. Biochem. Biophys. 453, 24-29.
-
(2006)
Arch. Biochem. Biophys.
, vol.453
, pp. 24-29
-
-
Chaires, J.B.1
-
57
-
-
0032508358
-
Circular dichroic and kinetic differentiation of DNA binding modes of distamycin
-
Chen, F.-M., and Sha, F. (1998) Circular Dichroic and Kinetic Differentiation of DNA Binding Modes of Distamycin, Biochemistry 37, 11143-11151.
-
(1998)
Biochemistry
, vol.37
, pp. 11143-11151
-
-
Chen, F.-M.1
Sha, F.2
-
58
-
-
0036647051
-
Thermodynamics of drug-DNA interactions
-
Haq, I. (2002) Thermodynamics of drug-DNA interactions, Arch. Biochem. Biophys. 403, 1-15.
-
(2002)
Arch. Biochem. Biophys.
, vol.403
, pp. 1-15
-
-
Haq, I.1
-
59
-
-
3042566962
-
Energetic basis for selective recognition of T*G mismatched base pairs in DNA by imidazole-rich polyamides
-
Lacy, E. R., Nguyen, B., Le, M., Cox, K. K., O'Hare, C., Hartley, J. A., Lee, M., and Wilson, W. D. (2004) Energetic basis for selective recognition of T*G mismatched base pairs in DNA by imidazole-rich polyamides, Nucleic Acids Res. 32, 2000-2007.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 2000-2007
-
-
Lacy, E.R.1
Nguyen, B.2
Le, M.3
Cox, K.K.4
O'Hare, C.5
Hartley, J.A.6
Lee, M.7
Wilson, W.D.8
-
60
-
-
0023933991
-
Molecular recognition between oligopeptides and nucleic acids: Influence of van der Waals contacts in determining the 3′-terminus of DNA sequences read by monocationic lexitropsins
-
Lee, M., Krowicki, K., Hartley, J. A., Pon, R. T., and Lown, J. W. (1988) Molecular recognition between oligopeptides and nucleic acids: Influence of van der Waals contacts in determining the 3′-terminus of DNA sequences read by monocationic lexitropsins, J. Am. Chem. Soc. 110, 3641-3649.
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 3641-3649
-
-
Lee, M.1
Krowicki, K.2
Hartley, J.A.3
Pon, R.T.4
Lown, J.W.5
-
61
-
-
46549102487
-
Investigation of the solution structures of short nucleic acid fragments by means of nuclear overhauser enhancement measurements
-
Gronenborn, A. M., and Clore, G. M. (1985) Investigation of the solution structures of short nucleic acid fragments by means of nuclear overhauser enhancement measurements, Prog. Nucl. Magn. Reson. Spectrosc. 17, 1-32.
-
(1985)
Prog. Nucl. Magn. Reson. Spectrosc.
, vol.17
, pp. 1-32
-
-
Gronenborn, A.M.1
Clore, G.M.2
|