Advances in surface plasmon resonance biosensor analysis

Current Opinion in Biotechnology

Volumn 11, Issue 1, 2000, Pages 54-61

  Rich, Rebecca L ^a   Myszka, David G ^a  

^a UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOSENSOR; BIOTECHNOLOGY; COMPUTER PROGRAM; DATA ANALYSIS; DRUG RESEARCH; METHODOLOGY; PRIORITY JOURNAL; REVIEW; SURFACE PLASMON RESONANCE;

EID: 0033955735     PISSN: 09581669     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0958-1669(99)00054-3     Document Type: Review

References (49)

1. Markey F. What is SPR anyway? BIA J. 6:1999;14-17.
2. Lackmann M., Bucci T., Mann R.J., Kravets L.A., Viney E., Smith F., Moritz R.L., Carter W., Simpson R.J., Nicola N.A.et al. Purification of a ligand for the EPH-like receptor HEK using a biosensor-based affinity detection approach. Proc Natl Acad Sci USA. 93:1996;2523-2527.
3. Markgren P-O., Hämäläinen M., Danielson U. Screening of compounds interacting with HIV-1 proteinase using optical biosensor technology. Anal Biochem. 265:1999;340-350. This paper demonstrates the potential to use BIACORE technology to monitor the interactions of small compounds with macromolecules and experimental procedures are presented that describe the analysis of compounds in dimethylsulfoxide. In addition, the authors illustrate how to present data obtained from screens.
4. Zeder-Lutz G., Neurath A.R., Van Regenmortel M.H. Kinetics of interaction between 3-hydroxyphthaloyl-beta-lactoglobulin and CD4 molecules. Biologicals. 27:1999;29-34.
5. -1.
6. Myszka D.G., Jonsen M.D., Graves B.J. Equilibrium analysis of high affinity interactions using BIACORE. Anal Biochem. 26:1998;326-330.
7. Roos H., Karlsson R., Nilshans H., Persson A. Thermodynamic analysis of protein interactions with biosensor technology. J Mol Recognit. 11:1998;204-210.
8. Jönsson U., Fägerstam L., Ivarsson B., Johnsson B., Karlsson R., Lundh K., Löfås S., Persson B., Roos H., Rönnberg I.et al. Real-time biospecific interaction analysis using surface plasmon resonance and a sensor chip technology. BioTechniques. 11:1991;620-627.
9. Myszka D.G. Survey of the 1998 optical biosensor literature. J Mol Recognit. 12:1999;. in press. This paper reviews the entire 1998 surface plasmon resonance literature and suggests experimental parameters to include in future publications.
10. Lowe P.A., Clark T.J., Davies R.J., Edwards P.R., Kinning T., Yeung D. New approaches for the analysis of molecular recognition using the IAsys evanescent wave biosensor. J Mol Recognit. 11:1998;194-199.
11. Wink T., de Beer J., Hennink W.E., Bult A., van Bennekom W.P. Interaction between plasmid DNA and cationic polymers studied by surface plasmon resonance spectroscopy. Anal Chem. 71:1999;801-805. This paper describes the use of an IBIS cuvette-based biosensor, emphasizing novel immobilization of synthetic polymers on the sensor surface and the polymers' interactions with plasmid DNA.
12. Kondoh M., Usui T., Nishikiori T., Osada H. Apoptosis induction via microtubule disassembly by an antitumor compound, pironetin. Biochem J. 340:1999;411-416. This paper reports using the Nippon SPR 670 biosensor to examine drug binding to immobilized tubulin.
13. Kukanskis K., Elkind J., Melendez J., Murphy T., Garner H. Detection of DNA hybridization using the Texas Instruments, Inc. TISPR-1 surface plasmon resonance biosensor. Anal Biochem. 274:1999;7-17. This paper provides a detailed description of the Texas Instruments' integrated detector, surface preparation chemistry, and optimization of experimental parameters.
14. Nelson R.W., Jarvik J.W., Taillon B.E., Tubbs K.A. BIA/MS of epitope-tagged peptides directly from E. coli lysate: multiplex detection and protein identification at low-femtomole to subfemtomole levels. Anal Chem. 71:1999;2858-2865.
15. Nelson R.W., Krone J.R. Advances in surface plasmon resonance biomolecular interaction analysis mass spectrometry (BIA/MS). J Mol Recognit. 12:1999;77-93.
16. Sönksen C., Nordhoff E., Jansson O., Malmqvist M., Roepstorff P. Combining MALDI mass spectrometry and biomolecular interaction analysis using a biomolecular interaction analysis instrument. Anal Chem. 70:1998;2731-2736. This paper describes new BIA/MS techniques, including improved washing steps and eluting concentrated, small-volume samples from the sensor chip.
17. Myszka D.G. Kinetic analysis of macromolecular interactions using surface plasmon resonance biosensors. Curr Opin Biotechnol. 8:1997;50-57.
18. Myszka D.G. Improving biosensor analysis. J Mol Recognit. 12:1999;279-284. This paper details the common approaches to improving experimental design. Double referencing procedures make it possible to collect reliable data on BIACORE 2000 below 2 RU.
19. Andersson K., Hämäläinen M., Malmqvist M. Identification and optimization of regeneration conditions for affinity-based biosensor assays. A multivariate cocktail approach. Anal Chem. 71:1999;2475-2481. This paper outlines a cocktail approach to removing the guesswork involved in sensor chip regeneration and describes a series of stock solutions, which in various combinations should disrupt the forces between immobilized ligand and bound species.
20. Myszka D.G., Morton T.A. CLAMP: a biosensor kinetic data analysis program. Trends Biochem Sci. 23:1998;149-150.
21. Cunningham S.A., Tran T.M., Arrate M.P., Brock T.A. Characterization of vascular endothelial cell growth factor interactions with the kinase insert domain-containing receptor tyrosine kinase. A real time kinetic study. J Biol Chem. 274:1999;18421-18427.
22. MacKenzie C.R., Hirama T., Buckley J.T. Analysis of receptor binding by the channel-forming toxin aerolysin using surface plasmon resonance. J Biol Chem. 274:1999;22604-22609.
23. Martin W.L., Bjorkman P.J. Characterization of the 2:1 complex between the class I MHC-related Fc receptor and its Fc ligand in solution. Biochemistry. 38:1999;12639-12647.
24. Zou W., Mackenzie R., Thérien L., Hirama T., Yang Q., Gidney M.A., Jennings H.J. Conformational epitope of the type III group B Streptococcus capsular polysaccharide. J Immunol. 163:1999;820-825.
25. Myszka D., Morton T., Doyle M., Chaiken I. Kinetic analysis of a protein antigen-anitbody interaction limited by mass transport on an optical biosensor. Biophys Chem. 64:1997;127-137.
26. Myszka D., Arulanantham P., Sana T., Wu Z., Morton T., Ciardelli T.L. Kinetic analysis of ligand binding to interleukin-2 receptor complexes created on an optical biosensor surface. Protein Sci. 5:1996;2468-2478.
27. Stuart J.K., Myszka D.G., Joss L., Mitchell R.S., McDonald S.M., Xie Z., Takayama S., Reed J.C., Ely K.R. Characterization of interactions between the anti-apoptotic protein BAG-1 and Hsc70 molecular chaperones. J Biol Chem. 273:1998;22506-22514.
28. Goldstein B., Coombs D., He X., Pineda A.R., Wofsy C. The influence of transport on the kinetics of binding to surface receptors: applications to cells and BIACORE. J Mol Recognit. 12:1999;293-299. These authors model the concentration gradients that occur in the flow cell under mass transport-limited conditions and discuss why the simple two-compartment model adequately describes these data.
29. o ⇌ A+B ⇌ AB) can accurately describe mass-transport-limited data and returns correct rate constants for the binding reaction.
30. Witz J. Kinetic analysis of analyte binding by optical biosensors: hydrodynamic penetration of the analyte flow into the polymer matrix reduces the influence of mass transport. Anal Biochem. 270:1999;201-206.
31. Mason T., Pineda A.R., Wofsy C., Goldstein B. Effective rate models for the analysis of transport-dependent biosensor data. Math Biosci. 159:1999;123-144.
32. Christensen L.L.H. Theoretical analysis of protein concentration determination using biosensor technology under conditions of partial mass transport limitation. Anal Biochem. 249:1997;153-164.
33. Richalet-Secordel P.M., Rauffer-Bruyere N., Christensen L.L., Ofenloch-Haehnle B., Seidel C., van Regenmortel M.H. Concentration measurement of unpurified proteins using biosensor technology under conditions of partial mass transport limitations. Anal Biochem. 249:1997;165-173.
34. Boger D.L., Saionz K.W. DNA binding properties of key sandramycin analogues: systematic examination of the intercalation chromophore. Bioorg Med Chem. 7:1999;315-321.
35. Kampranis S.C., Gormley N.A., Tranter R., Orphanides G., Maxwell A. Probing the binding of coumarins and cyclothialidines to DNA gyrase. Biochemistry. 38:1999;1967-1976.
36. Malmqvist M. BIACORE: an affinity biosensor system for characterization of biomolecular interactions. Biochem Soc Trans. 27:1999;335-340.
37. Strandh M., Persson B., Roos H., Ohlson S. Studies of interactions with weak affinities and low-molecular-weight compounds using surface plasmon resonance technology. J Mol Recognit. 11:1998;188-190.
38. Evans S.V., MacKenzie C.R. Characterization of protein-glycolipid recognition at the membrane bilayer. J Mol Recognit. 12:1999;155-168. This review of glycolipid-protein interactions described different methods of constructing monolayers and bilayers on the sensor chip, as well as some of the recent applications of this technology.
39. Ariga T., Yu R.K. GM1 inhibits amyloid beta-protein-induced cytokine release. Neurochem Res. 24:1999;219-226.
40. Currie R.A., Walker K.S., Gray A., Deak M., Casamayor A., Downes C.P., Cohen P., Alessi D.R., Lucocq J. Role of phosphatidylinositol 3,4,5-trisphosphate in regulating the activity and localization of 3-phosphoinositide-dependent protein kinase-1. Biochem J. 337:1999;575-583.
41. Dowler S., Currie R.A., Downes C.P., Alessi D.R. DAPP1: a dual adaptor for phosphotyrosine and 3-phosphoinositides. Biochem J. 342:1999;7-12.
42. Surdo P.L., Bottomley M.J., Arcaro A., Siegal G., Panayotou G., Sankar A., Gaffney P.R., Riley A.M., Potter B.V., Waterfield M.D., Driscoll P.C. Structural and biochemical evaluation of the interaction of the phosphatidylinositol 3-kinase p85alpha Src homology 2 domains with phosphoinositides and inositol polyphosphates. J Biol Chem. 274:1999;15678-15685.
43. Sui S.F., Sun Y.T., Mi L.Z. Calcium-dependent binding of rabbit C-reactive protein to supported lipid monolayers containing exposed phosphorylcholine group. Biophys J. 76:1999;333-341.
44. Schelhaas M., Nagele E., Kuder N., Bader B., Kuhlmann J., Wittinghofer A., Waldmann H. Chemoenzymatic synthesis of biotinylated Ras peptides and their use in membrane binding studies of lipidated model proteins by surface plasmon resonance. Chem Eur J. 5:1999;1239-1252.
45. Celia H., Wilson-Kubalek E., Milligan R.A., Teyton L. Structure and function of a membrane-bound murine MHC class I molecule. Proc Natl Acad Sci USA. 96:1999;5634-5639.
46. Dorn I.T., Eschrich R., Seemuller E., Guckenberger R., Tampé R. High-resolution AFM-imaging and mechanistic analysis of the 20 S proteasome. J Mol Biol. 288:1999;1027-1036.
47. Yoo S., Myszka D., Yeh C-Y., McMurray M., Hill C., Sundquist W. Molecular recognition in the HIV-1 capsid/cyclophilin A complex. J Mol Biol. 269:1997;780-795.
48. Joss L., Morton T., Doyle M., Myszka D. Interpreting kinetic rate constants from optical biosensor data recorded on a decaying surface. Anal Biochem. 261:1998;203-210.
49. Leder L., Llera A., Lavoie P., Lebedeva M., Li H., Sékaly R-P., Bohach G., Gahr P., Schlievert P., Karjalainen K., Mariuzza R. A mutational analysis of the binding in staphylococcal enterotoxins B and C3 to the T cell receptor β chain and major histocompatibility complex class II. J Exp Med. 187:1999;823-833.