SCOPUS 정보 검색 플랫폼

Journal of the American Chemical Society

Volumn 123, Issue 21, 2001, Pages 5044-5049

Complex of B-DNA with polyamides freezes DNA backbone flexibility

(6) Wellenzohn, B a Flader, W a Winger, R H a Hallbrucker, A a Mayer, E a Liedl, K R a

a UNIVERSITY OF INNSBRUCK (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

LIGANDS; TRANSCRIPTION-CONTROLLING DRUGS;

COMPLEXATION; COMPUTER SIMULATION; DRUG DOSAGE; MOLECULAR DYNAMICS; POLYAMIDES; SUBSTRATES; X RAY CRYSTALLOGRAPHY;

DNA;

ANTIINFECTIVE AGENT; ANTINEOPLASTIC AGENT; ANTIVIRUS AGENT; DNA; POLYAMIDE;

ARTICLE; CONFORMATIONAL TRANSITION; CRYSTAL STRUCTURE; DNA DRUG COMPLEX; DRUG CONFORMATION; GENE TARGETING; HYDROGEN BOND; LIGAND BINDING; MOLECULAR DYNAMICS; X RAY CRYSTALLOGRAPHY;

BASE SEQUENCE; DNA; HYDROGEN BONDING; NUCLEIC ACID CONFORMATION; NYLONS;

EID: 0034807859 PISSN: 00027863 EISSN: None Source Type: Journal
DOI: 10.1021/ja003639b Document Type: Article

Times cited : (43)

References (97)

1
- 0033596292
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 11621-11629
- Urbach, A.R.¹ Szewczyk, J.W.² White, S.³ Turner, J.M.⁴ Baird, E.E.⁵ Dervan, P.B.⁶

2
- 0032475994
- (1998) Science , vol.282 , pp. 111-115
- Kielkopf, C.L.¹ White, S.² Szewczyk, J.W.³ Turner, J.M.⁴ Baird, E.E.⁵ Dervan, P.B.⁶ Rees, D.C.⁷

3
- 0031933884
- (1998) Nature Struct. Biol. , vol.5 , pp. 104-108
- Kielkopf, C.L.¹ Baird, E.E.² Dervan, P.B.³ Rees, D.C.⁴

4
- 0033550509
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 260-261
- White, S.¹ Turner, J.M.² Szewczyk, J.W.³ Baird, E.E.⁴ Dervan, P.B.⁵

5
- 0029938421
- (1996) Curr. Opin. Struct. Biol. , vol.6 , pp. 299-304
- Turner, D.¹

6
- 0031782431
- (1998) Chem. Eur. J. , vol.4 , pp. 796-805
- Greenberg, W.A.¹ Baird, E.E.² Dervan, P.B.³

7
- 0033576975
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 1121-1129
- Herman, D.M.¹ Turner, J.M.² Baird, E.E.³ Dervan, P.B.⁴

8
- 0032986773
- (1999) Chem. Eur. J. , vol.5 , Issue.3 , pp. 975-983
- Herman, D.M.¹ Baird, E.E.² Dervan, P.B.³

9
- 0030745572
- (1997) J. Am. Chem. Soc. , vol.119 , pp. 6953-6961
- Swalley, S.E.¹ Baird, E.E.² Dervan, P.B.³

10
- 0030758956
- (1997) J. Am. Chem. Soc. , vol.119 , pp. 7909-7916
- De Clairac, R.P.L.¹ Geierstanger, B.H.² Mrksich, M.³ Dervan, P.B.⁴ Wemmer, D.E.⁵

11
- 0342987251
- (1992) J. Am. Chem. Soc. , vol.114 , pp. 8783-8794
- Wade, W.S.¹ Mrksich, M.² Dervan, P.B.³

12
- 0026661689
- (1992) Proc. Natl. Acad. Sci. , vol.89 , pp. 7586-7590
- Mrksich, M.¹ Wade, W.S.² Dwyer, T.J.³ Geierstanger, B.H.⁴ Wemmer, D.E.⁵ Dervan, P.B.⁶

13
- 0343527980
- (2000) J. Am. Chem. Soc. , vol.122 , pp. 5235-5243
- Hawkins, C.A.¹ De Clairac, R.P.² Raymond, R.N.³ Dominey, N.⁴ Baird, E.E.⁵ White, S.⁶ Dervan, P.B.⁷ Wemmer, D.E.⁸

14
- 0030951207
- (1997) Nature , vol.387 , pp. 202-205
- Gottesfeld, J.M.¹ Neely, L.² Trauger, J.W.³ Baird, E.E.⁴ Dervan, P.B.⁵

15
- 0032573224
- (1998) Proc. Natl. Acad. Sci. , vol.95 , pp. 12890-12895
- Dickinson, L.A.¹ Gulizia, R.J.² Trauger, J.W.³ Baird, E.E.⁴ Mosier, D.E.⁵ Gottesfeld, J.M.⁶ Dervan, P.B.⁷

16
- 0032584571
- (1998) Science , vol.281 , pp. 657-658
- Wittung-Stafshede, P.¹

17
- 0028670569
- (1994) Nature , vol.372 , pp. 642-645
- Choo, Y.¹ Sanchez, I.² Klug, A.³

18
- 0034652141
- (2000) Proc. Natl. Acad. Sci. , vol.97 , Issue.4 , pp. 1495-1500
- Beerly, R.R.¹ Dreier, B.² Barbas III, C.F.³

19
- 0033617408
- (1999) J. Biol. Chem. , vol.30 , Issue.18 , pp. 12765-12773
- Dickinson, L.A.¹ Trauger, J.W.² Baird, E.E.³ Dervan, P.B.⁴ Graves, B.J.⁵ Gottesfeld, J.M.⁶

20
- 0028284375
- (1994) Curr. Opin. Struct. Biol. , vol.4 , pp. 351-364
- Krugh, T.R.¹

21
- 0031424230
- (1997) Biopolymers (Nucleic Acid Sci.) , vol.44 , pp. 105-121
- Neidle, S.¹

22
- 0032481320
- (1998) J. Am. Chem. Soc. , vol.120 , pp. 619-631
- Sen, S.¹ Nilsson, L.²

23
- 0025762608
- (1991) Biochemistry , vol.30 , pp. 1372-1385
- Lane, A.N.¹ Jenkins, T.C.² Brown, T.³ Neidle, S.⁴

24
- 0030769851
- (1997) J. Biomol. Struct. Dyn. , vol.15 , pp. 63-67
- Monaco, R.R.¹ Polkosnik, W.² Dwarakanath, S.³

25
- 0032578169
- (1998) J. Am. Chem. Soc. , vol.120 , pp. 7183-7191
- Bifulco, G.¹ Galeone, A.² Nicolaou, K.³ Chazin, W.J.⁴ Gomez-Paloma, L.⁵

26
- 0021109028
- (1983) Nucleic Acids Res. , vol.11 , pp. 8825-8839
- Zakrzewska, K.¹ Lavery, R.² Pullman, B.³

27
- 0028136464
- (1994) Proc. Natl. Acad. Sci. , vol.91 , pp. 9203-9207
- Ho, S.N.¹ Boyer, S.H.² Schreiber, S.L.³ Danishefsky, S.J.⁴ Crabtree, G.R.⁵

28
- 0000877322
- (1982) Biochemstry , vol.21 , pp. 6424-6428
- Patel, D.J.¹

29
- 0028047910
- (1994) J. Biomol. Struct. Dyn. , vol.11 , pp. 1203-1224
- Perree-Fauvet, M.¹ Gresh, N.²

30
- 0028925164
- (1994) Biopolymers , vol.35 , pp. 543-553
- Walker, W.L.¹ Kopka, M.L.² Filipowski, M.E.³ Dickerson, R.E.⁴ Goodsell, D.S.⁵

31
- 0031919484
- (1998) J. Biomol. Struct. Dyn. , vol.15 , pp. 779-791
- Steinmetzer, K.¹ Reinert, K.E.²

32
- 0030927763
- (1997) Curr. Opin. Struct. Biol. , vol.7 , pp. 355-361
- Wemmer, D.E.¹ Dervan, P.B.²

33
- 0022693818
- (1986) Science , vol.238 , pp. 464-471
- Dervan, P.B.¹

34
- 0034141784
- (2000) Nucleic Acids Res. , vol.28 , pp. 728-735
- Gavathiotis, E.¹ Sharman, G.J.² Searle, M.S.³

35
- 0033977496
- (2000) J. Am. Chem. Soc. , vol.122 , pp. 300-307
- Wan, K.X.¹ Shibue, T.² Gross, M.L.³

36
- 0033404871
- (1999) J. Mass Spectrom. , vol.34 , pp. 1328-1337
- Gabelica, V.¹ Pauw, E.D.² Rosu, F.³

37
- 2542609960
- (1998) Biopolymers (Nucleic Acid Sci.) , vol.44 , pp. 361-403
- Dickerson, R.E.¹ Chiu, T.K.²

38
- 0032522139
- (1998) Nucleic Acids Res. , vol.26 , pp. 1906-1926
- Dickerson, R.E.¹

39
- 0030717552
- (1997) Proc. Natl. Acad. Sci. , vol.94 , pp. 12845-12850
- Giese, K.¹ Page, J.² Grosschedl, R.³

40
- 0029962943
- (1996) J. Mol. Biol. , vol.258 , pp. 457-479
- Chen, H.¹ Liu, X.² Patel, D.J.³

41
- 0029930225
- (1996) Biochemstry , vol.35 , pp. 3845-3848
- Shi, Y.¹ Berg, J.M.²

42
- 0028210087
- (1994) Science , vol.263 , pp. 769-770
- Von Hippel, P.H.¹

43
- 0029792999
- (1996) Proc. Natl. Acad. Sci. , vol.93 , pp. 9515-9529
- Strauss, J.K.¹ Roberts, C.² Nelson, M.G.³ Switzer, C.⁴ Maher III, L.J.⁵

44
- 0032540302
- (1998) J. Mol. Biol. , vol.277 , pp. 1071-1080
- Bareket-Samish, A.¹ Cohen, I.² Haran, T.E.³

45
- 0029975922
- (1996) J. Biol. Chem. , vol.271 , Issue.10 , pp. 5565-5573
- Wenz, C.¹ Jeltsch, A.² Pingoud, A.³

46
- 0003436941
- Cambridge University Press: Cambridge U.K.
- (1993) Structural studies of protein-nucleic acid interaction
- Steitz, T.A.¹

47
- 0003776015
- Oxford University Press: Oxford U.K.
- (1995) DNA-Protein Structural Interactions
- Lilley, D.M.J.¹

48
- 0004237837
- Chapman & Hall: London U.K.
- (1993) DNA-Protein Interactions
- Travers, A.¹

49
- 0031830815
- (1998) Annu. Rev. Biophys. Biophys. Chem. , vol.27 , pp. 105-131
- Bewley, C.A.¹ Grinenborn, A.M.² Clore, G.M.³

50
- 0031964687
- (1998) Nature Struct. Biol. , vol.5 , pp. 67-73
- Chen, Y.-Q.¹ Gosh, S.² Gosh, G.³

51
- 0028118685
- (1994) Curr. Opin. Struct. Biol. , vol.4 , pp. 12-21
- Ellenberger, T.¹

52
- 0028103855
- (1994) Cell , vol.78 , pp. 211-223
- Gehring, W.J.¹ Qian, Y.Q.² Furukubo-Tokunaga, M.K.³ Schlier, F.⁴ Resendez-Perez, D.⁵ Affolter, M.⁶ Otting, G.⁷ Wüthrich, K.⁸

53
- 0025310356
- (1990) Annu. Rev. Biochem. , vol.59 , pp. 933-969
- Harrison, S.C.¹ Aggarwal, A.K.²

54
- 0003803289
- Oxford University Press: Oxford U.K.
- (1999) Oxford Handbook of Nucleic Acid Structure
- Neidle, S.¹

55
- 0026682657
- (1992) Annu. Rev. Biochem. , vol.61 , pp. 1053-1095
- Pabo, C.O.¹ Sauer, R.T.²

56
- 0031195002
- (1997) Biopolymers , vol.42 , pp. 113-124
- Schneider, B.¹ Neidle, S.² Berman, H.M.³

57
- 0031423949
- (1997) Biopolymers , vol.44 , pp. 23-44
- Berman, H.M.¹

58
- 0030426643
- (1996) Rev. Biophys. , vol.29 , pp. 309-368
- Hartmann, B.¹ Lavery, R.Q.²

59
- 0020359857
- (1982) J. Biol. Chem. , vol.257 , pp. 14686-14707
- Fratini, A.V.¹ Kopka, M.L.² Drew, H.R.³ Dickerson, R.E.⁴

60
- 0019088033
- (1980) Proc. Natl. Acad. Sci. , vol.77 , pp. 6486-6490
- Gupta, G.¹ Bansal, M.² Sasiskharan, V.³

61
- 0023628497
- (1987) Science , vol.238 , pp. 498-504
- Privé, G.G.¹ Heinemann, U.² Chandrasegaran, S.³ Kan, L.-S.⁴ Kopka, M.L.⁵ Dickerson, R.E.⁶

62
- 0023054147
- (1986) J. Mol. Biol. , vol.192 , pp. 891-905
- Cruse, W.B.T.¹ Salisbury, S.A.² Brown, T.³ Cosstick, R.⁴ Eckstein, F.⁵ Kennard, O.⁶

63
- 0021770423
- (1984) J. Mol. Biol. , vol.174 , pp. 221-229
- Shindo, H.¹ Fujiwara, T.² Akutsu, H.³ Masumoto, U.⁴ Shimidzu, M.⁵

64
- 0023617180
- (1987) J. Am. Chem. Soc. , vol.109 , pp. 7525-7526
- Sklenar, V.¹ Bax, A.²

65
- 0000826192
- (1994) Chem. Rev. , vol.94 , pp. 1315-1338
- Gorenstein, D.G.¹

66
- 0343312127
- (1997) J. Am. Chem. Soc. , vol.119 , pp. 12251-12256
- Rüdisser, S.¹ Hallbrucker, A.² Mayer, E.³

67
- 0032029586
- (1998) Nucleic Acids Res. , vol.26 , pp. 1261-1267
- Bertrand, H.O.¹ Ha-Duong, T.² Fermandjian, S.³ Hartmann, B.⁴

68
- 0001523608
- (1998) J. Phys. Chem. B. , vol.102 , pp. 8934-8940
- Winger, R.H.¹ Liedl, K.R.² Rüdisser, S.³ Pichler, A.⁴ Hallbrucker, A.⁵ Mayer, E.⁶

69
- 0030862276
- (1997) Biophys. J. , vol.73 , pp. 2313-2336
- Young, M.A.¹ Ravishanker, G.² Beveridge, D.L.³

70
- 0030953141
- (1997) J. Am. Chem. Soc. , vol.119 , pp. 4805-4825
- Cheatham III, T.E.¹ Kollman, P.A.²

71
- 0032587032
- (1999) Biophys. J. , vol.77 , pp. 398-409
- Pichler, A.¹ Rüdisser, S.² Mitterbock, M.³ Winger, R.H.⁴ Liedl, K.R.⁵ Hallbrucker, A.⁶ Mayer, E.⁷

72
- 0034711942
- (2000) J. Mol. Biol. , vol.296 , pp. 787-801
- Kielkopf, C.L.¹ Ding, S.² Kuhn, P.³ Rees, D.C.⁴

73
- 0026742978
- (1992) Biophys. J. , vol.63 , pp. 751-759
- Berman, H.M.¹ Olson, W.K.² Beveridge, D.L.³ Westbrook, J.⁴ Gelbin, A.⁵ Demeny, T.⁶ Hsieh, S.-H.⁷ Srinivasan, A.R.⁸ Schneider, B.⁹

74
- 0026713204
- (1992) Methods Enzymol. , vol.211 , pp. 449-467
- Von Kitzing, E.¹

75
- 0028222740
- (1994) Curr. Opin. Struct. Biol. , vol.4 , pp. 246-255
- Beveridge, D.L.¹ Ravishanker, G.²

76
- 0002593973
- Molecular dynamics simulations on the hydration structure and motions of DNA oligomers
- Westhof, E.,Ed.; The Macmillan Press Ltd.: London
- (1993) Water and Biological Macromolecules , pp. 165-225
- Beveridge, D.L.¹ Swaminathan, S.² Ravishanker, G.³ Withka, J.M.⁴ Srinivasan, J.⁵ Prevost, C.⁶ Louise-May, S.⁷ Langley, D.R.⁸ DiCapua, F.M.⁹ Bolton, P.H.¹⁰

77
- 0030005364
- (1996) Curr. Opin. Struct. Biol. , vol.6 , pp. 289-298
- Louise-May, S.¹ Auffinger, P.² Westhof, E.³

78
- 0030759587
- (1997) J. Am. Chem. Soc. , vol.119 , pp. 6722-6730
- Cieplak, P.¹ Cheatham III, T.E.² Kollman, P.A.³

79
- 0001552411
- Analysis of helix bending in crystal structures and molecular dynamics simulations of DNA oligo-nucleotides
- Adenine Press: Albany, NY
- (1994) Structural Biology: The State of the Art , pp. 197-214
- Young, M.A.¹ Nirmala, R.² Srinivasan, J.³ McConnell, K.J.⁴ Ravishanker, G.⁵ Beveridge, D.L.⁶ Berman, H.M.⁷

80
- 0029941154
- (1996) J. Mol. Biol. , vol.259 , pp. 434-444
- Cheatham III, T.E.¹ Kollman, P.A.²

81
- 0031047279
- (1997) J. Am. Chem. Soc. , vol.119 , pp. 59-69
- Young, M.A.¹ Jayaram, B.² Beveridge, D.L.³

82
- 0030889250
- (1997) J. Biomol. Struct. Dyn. , vol.14 , pp. 607-611
- De Souza, O.N.¹ Ornstein, R.L.²

83
- 0000952715
- (1997) Biophys. J. , vol.72 , pp. 2395-2397
- De Souza, O.N.¹ Ornstein, R.L.²

84
- 0003982649
- University of California, San Francisco
- (1997) AMBER 5
- Case, D.A.¹ Pearlman, D.A.² Caldwell, J.W.³ Cheatham III, T.E.⁴ Ross, W.S.⁵ Simmerling, C.L.⁶ Darden, T.A.⁷ Merz, K.M.⁸ Stanton, R.V.⁹ Cheng, A.L.¹⁰ Vincent, J.J.¹¹ Crowley, M.¹² Ferguson, D.M.¹³ Radmer, R.J.¹⁴ Seibel, G.L.¹⁵ Singh, U.C.¹⁶ Weiner, P.K.¹⁷ Kollman, P.A.¹⁸

85
- 0029011701
- (1995) J. Am. Chem. Soc. , vol.117 , pp. 5179-5197
- Cornell, W.D.¹ Cieplak, P.² Bayly, C.I.³ Gould, I.R.⁴ Merz K.M., Jr.⁵ Ferguson, D.M.⁶ Spellmeyer, D.C.⁷ Fox, T.⁸ Caldwell, J.W.⁹ Kollman, P.A.¹⁰

86
- 0032922174
- (1999) J. Biomol. Struct. Dyn. , vol.16 , pp. 845-862
- Cheatham III, T.E.¹ Cieplak, P.² Kollman, P.A.³

87
- 3042524904
- (1993) J. Phys. Chem. , vol.97 , pp. 10269-10280
- Bayly, C.¹ Cieplak, P.² Cornell, W.³ Kollman, P.⁴

89
- 33750587438
- (1984) J. Chem. Phys. , vol.81 , pp. 3684-3690
- Berendsen, H.J.C.¹ Postma, J.P.M.² Van Gunsteren, W.F.³ DiNola, A.⁴ Haak, J.R.⁵

90
- 0004270587
- Molecular Modeling Group, German Cancer Research Center
- (1999) rasmol2.6ab9
- Sayle, R.¹ Müller, A.² Bohne, A.³

91
- 0004046580
- Centre for Scientific Computing, Espoo (SF)
- (1996) gOpenMol 1.21
- Laaksonen, L.¹

92
- 0034716712
- (2000) J. Am. Chem. Soc. , vol.122 , pp. 3927-3931
- Wellenzohn, B.¹ Winger, R.H.² Hallbrucker, A.³ Mayer, E.⁴ Liedl, K.R.⁵

93
- 0025816853
- (1991) J. Biol. Chem. , vol.266 , pp. 8861-8883
- Grzeskowiak, K.¹ Yanagi, K.² Privé, G.G.³ Dickerson, R.E.⁴

94
- 0003428690
- submitted
- J. Phys. Chem. B.
- Flader, W.¹ Wellenzohn, B.² Winger, R.H.³ Hallbrucker, A.⁴ Mayer, E.⁵ Liedl, K.R.⁶

95
- 0037134592
- (2001) J. Phys. Chem. B. , vol.105 , pp. 3135-3142
- Wellenzohn, B.¹ Flader, W.² Winger, R.H.³ Hallbrucker, A.⁴ Mayer, E.⁵ Liedl, K.R.⁶

96
- 0024294634
- (1988) Nature , pp. 321-329
- Otwinowski, Z.¹ Schevitz, R.W.² Zhang, R.-G.³ Lawson, C.L.⁴ Joachimiak, A.⁵ Marmorstein, R.Q.⁶ Luisi, B.F.⁷ Sigler, P.B.⁸

97
- 0020692923
- (1983) J. Mol. Biol. , vol.163 , pp. 129-146
- Kopka, M.L.¹ Fratini, A.V.² Drew, H.R.³ Dickerson, R.E.⁴

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