Molecular recognition of the nucleosomal "supergroove"

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 18, 2004, Pages 6864-6869

  Edayathumangalam, Rajeswari S ^a   Weyermannt, Philipp ^b   Gottesfeld, Joel M ^c   Dervants, Peter B ^b   Luger, Karolin ^a  

^a Department of Environmental and Radiological Health Sciences   (United States)

^b California Institute of Technology   (United States)

^c SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL NUCLEUS DNA; HISTONE; POLYAMIDE;

ANIMAL CELL; ARTICLE; CHROMATIN STRUCTURE; CRYSTAL STRUCTURE; GENE CONTROL; MOLECULAR RECOGNITION; MOLECULAR STABILITY; NONHUMAN; NUCLEOSOME; OOCYTE; PRIORITY JOURNAL; PROTEIN CROSS LINKING; PROTEIN PROTEIN INTERACTION; XENOPUS LAEVIS;

ANIMALS; DNA; HISTONES; NUCLEOSOMES; PROTEIN BINDING; XENOPUS;

ANIMALIA; EUKARYOTA; XENOPUS LAEVIS;

EID: 2342652808     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0401743101     Document Type: Article

References (27)

1. Davey, C. A., Sargent, D. F., Luger, K., Maeder, A. W. & Richmond, T. J. (2002) J. Mol. Biol. 319, 1097-1113.
2. Luger, K., Mader, A. W., Richmond, R. K., Sargent, D. F. & Richmond, T. J. (1997) Nature 389, 251-260.
3. Richmond, T. J. & Davey, C. A. (2003) Nature 423, 145-150.
4. Luger, K. (2003) Curr. Opin. Genet. Dev. 13, 127-135.
5. Srinivasan, A. R. & Olson, W. K. (1992) Biophys. Chem. 43, 279-310.
6. Dervan, P. B. & Edelson, B. S. (2003) Curr. Opin. Struct. Biol. 13, 284-299.
7. Gottesfeld, J. M., Melander, C., Suto, R. K., Raviol, H., Luger, K. & Dervan, P. B. (2001) J. Mol. Biol. 309, 615-629.
8. Suto, R. K., Edayathumangalam, R. S., White, C. L., Melander, C., Gottesfeld, J. M., Dervan, P. B. & Luger, K. (2003) J. Mol. Biol. 326, 371-380.
9. Luger, K., Rechsteiner, T. J. & Richmond, T. J. (1999) Methods Enzymol. 304, 3-19.
10. Dyer, P. N., Edayathumangalam, R. S., White, C. L., Bao, Y., Chakravarthy, S., Muthurajan, U. M. & Luger, K. (2004) Methods Enzymol. 375, 23-44.
11. Baird, E. E. & Dervan, P. B. (1996) J. Am. Chem. Soc. 118, 6141-6146.
12. Weyermann, P. & Dervan, P. B. (2002) J. Am. Chem. Soc. 124, 6872-6878.
13. Otwinowski, Z. & Minor, W. (1997) Processing of X-Ray Diffraction Data Collected in Oscillation Mode (Academic, New York).
14. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., et al. (1998) Acta Crystallogr. D Biol. Crystallogr. 54, 905-921.
15. Jones, T. A., Zou, J. Y., Cowan, S. W. & Kjelgaard, M. (1991) Acta Crystallogr. A 47, 110-119.
16. Kleywegt, G. J. & Jones, T. A. (1998) Acta Crystallogr. D Biol. Crystallogr. 54, 1119-1131.
17. Engh, R. A. & Huber, R. (1991) Acta Crystallogr. A 47, 392-400.
18. Kleywegt, G. J. (1996) Acta Crystallogr. D 52, 842-857.
19. Gottesfeld, J. M. & Luger, K. (2001) Biochemistry 40, 10927-10933.
20. Trauger, J. W. & Dervan, P. B. (2001) Methods Enzymol. 340, 450-466.
21. Muthurajan, U. M., Park, Y. J., Edayathumangalam, R. S., Suto, R. K., Chakravarthy, S., Dyer, P. N. & Luger, K. (2003) Biopolymers 69, 547-556.
22. Kassabov, S. R., Zhang, B., Persinger, J. & Bartholomew, B. (2003) Mol. Cell 11, 391-403.
23. Mizuguchi, G., Shen, X., Landry, J., Wu, W. H., Sen, S. & Wu, C. (2004) Science 303, 343-348.
24. Ausio, J., Seger, D. & Eisenberg, H. (1984) J. Mol. Biol. 176, 77-104.
25. Cotton, R. W. & Hamkalo, B. A. (1981) Nucleic Acids Res. 9, 445-457.
26. Collingwood, T. N., Urnov, F. D. & Wolffe, A. P. (1999) J. Mol. Endocrinol. 23, 255-275.
27. Stunkel, W., Kober, I. & Seifart, K. H. (1997) Mol. Cell. Biol. 17, 4397-4405.