Novel role for the C terminus of Saccharomyces cerevisiae Rev1 in mediating protein-protein interactions

Molecular and Cellular Biology

Volumn 26, Issue 21, 2006, Pages 8173-8182

  D'Souza, Sanjay ^a   Walker, Graham C ^a  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL EXTRACT; DNA POLYMERASE; DNA POLYMERASE REV1; DNA POLYMERASE ZETA; FUNGAL PROTEIN; GUANINE; PROTEIN REV7; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CATALYSIS; CONTROLLED STUDY; DNA DAMAGE; DNA STRUCTURE; ENZYME ACTIVITY; IMMUNOPRECIPITATION; MUTAGENESIS; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN MOTIF; PROTEIN PROTEIN INTERACTION; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY;

AMINO ACID MOTIFS; CELL SURVIVAL; DNA DAMAGE; DNA-DIRECTED DNA POLYMERASE; MUTATION; NUCLEOTIDYLTRANSFERASES; PEPTIDE FRAGMENTS; PHENOTYPE; PROTEIN STRUCTURE, TERTIARY; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; ULTRAVIOLET RAYS;

EUKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 33750304863     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.00202-06     Document Type: Article

References (47)

1. Acharya, N., L. Haracska, R. E. Johnson, I. Unk, S. Prakash, and L. Prakash. 2005. Complex formation of yeast Rev1 and Rev7 proteins: a novel role for the polymerase-associated domain. Mol. Cell. Biol. 25:9734-9740.
2. Aravind, L., and E. V. Koonin. 1998. The HORMA domain: a common structural denominator in mitotic checkpoints, chromosome synapsis and DNA repair. Trends Biochem. Sci. 23:284-286.
3. Bienko, M., C. M. Green, N. Crosetto, F. Rudolf, G. Zapart, B. Coull, P. Kannouche, G. Wider, M. Peter, A. R. Lehmann, K. Hofmann, and I. Dikic. 2005. Ubiquitin-binding domains in Y-family polymerases regulate translesion synthesis. Science 310:1821-1824.
4. Callebaut, I., and J. P. Mornon. 1997. From BRCA1 to RAP1: a widespread BRCT module closely associated with DNA repair. FEBS Lett. 400:25-30.
5. Chen, J., and G. Fang. 2001. MAD2B is an inhibitor of the anaphase-promoting complex. Genes Dev. 15:1765-1770.
6. Duncker, B. P., K. Shimada, M. Tsai-Pflugfelder, P. Pasero, and S. M. Gasser. 2002. An N-terminal domain of Dbf4p mediates interaction with both origin recognition complex (ORC) and Rad53p and can deregulate late origin firing. Proc. Natl. Acad. Sci. USA 99:16087-16092.
7. Friedberg, E. C., G. C. Walker, W. Siede, R. D. Wood, R. A. Schultz, and T. Ellenberger. 2006. DNA repair and mutagenesis, 2nd ed. ASM Press, Washington, D. C.
8. Geitz, R. D., and R. A. Woods. 2002. Guide to yeast genetics and molecular and cell biology, vol. 350. Academic Press, San Diego, Calif.
9. Guo, C., P. L. Fischhaber, M. J. Luk-Paszyc, Y. Masuda, J. Zhou, K. Kamiya, C. Kisker, and E. C. Friedberg. 2003. Mouse Rev1 protein interacts with multiple DNA polymerases involved in translesion DNA synthesis. EMBO J. 22:6621-6630.
10. Guo, D., Z. Xie, H. Shen, B. Zhao, and Z. Wang. 2004. Translesion synthesis of acetylaminofluorene-dG adducts by DNA polymerase zeta is stimulated by yeast Rev1 protein. Nucleic Acids Res. 32:1122-1130.
11. Haracska, L., S. Prakash, and L. Prakash. 2002. Yeast Rev1 protein is a G template-specific DNA polymerase. J. Biol. Chem. 277:15546-15551.
12. Haracska, L., I. Unk, R. E. Johnson, E. Johansson, P. M. Burgers, S. Prakash, and L. Prakash. 2001. Roles of yeast DNA polymerases delta and zeta and of Rev1 in the bypass of abasic sites. Genes Dev. 15:945-954.
13. Harlow, E., and D. Lane. 1999. Using antibodies: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
14. Hirano, Y., and K. Sugimoto. 2006. ATR homolog Mec1 controls association of DNA polymerase zeta-Rev1 complex with regions near a double-strand break. Curr. Biol. 16:586-590.
15. Johnson, R. E., M. T. Washington, L. Haracska, S. Prakash, and L. Prakash. 2000. Eukaryotic polymerases iota and zeta act sequentially to bypass DNA lesions. Nature 406:1015-1019.
16. Kannouche, P. L., and A. R. Lehmann. 2004. Ubiquitination of PCNA and the polymerase switch in human cells. Cell Cycle 3:1011-1013.
17. Knop, M., K. Siegers, G. Pereira, W. Zachariae, B. Winsor, K. Nasmyth, and E. Schiebel. 1999. Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routines. Yeast 15:963-972.
18. Lai, J. S., and W. Herr. 1992. Ethidium bromide provides a simple tool for identifying genuine DNA-independent protein associations. Proc. Natl. Acad. Sci. USA 89:6958-6962.
19. Larimer, F. W., J. R. Perry, and A. A. Hardigree. 1989. The REV1 gene of Saccharomyces cerevisiae: isolation, sequence, and functional analysis. J. Bacteriol. 171:230-237.
20. Lawrence, C. 1994. The RAD6 DNA repair pathway in Saccharomyces cerevisiae: what does it do, and how does it do it? Bioessays 16:253-258.
21. Lawrence, C. W. 2004. Cellular functions of DNA polymerase zeta and Rev1 protein. Adv. Protein Chem. 69:167-203.
22. Lawrence, C. W., and R. B. Christensen. 1978. Ultraviolet-induced reversion of cyc1 alleles in radiation-sensitive strains of yeast. I. rev1 mutant strains. J. Mol. Biol. 122:1-21.
23. Lawrence, C. W., G. Das, and R. B. Christensen. 1985. REV7, a new gene concerned with UV mutagenesis in yeast. Mol. Gen. Genet. 200:80-85.
24. Lawrence, C. W., T. O'Brien, and J. Bond. 1984. UV-induced reversion of his4 frameshift mutations in rad6, rev1, and rev3 mutants of yeast, Mol. Gen. Genet. 195:487-490.
25. Lemontt, J. F. 1971. Mutants of yeast defective in mutation induced by ultraviolet light. Genetics 68:21-23.
26. Ling, H., F. Boudsocq, R. Woodgate, and W. Yang. 2001. Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication. Cell 107:91-102.
27. Longtine, M. S., A. McKenzie III, D. J. Demarini, N. G. Shah, A. Wach, A. Brachat, P. Philippsen, and J. R. Pringle. 1998, Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14:953-961.
28. Lopes, M., M. Foiani, and J. M. Sogo. 2006. Multiple mechanisms control chromosome integrity after replication fork uncoupling and restart at irreparable UV lesions. Mol. Cell 21:15-27.
29. Murakumo, Y., Y. Ogura, H. Ishii, S. Numata, M. Ichihara, C. M. Croce, R. Fishel, and M. Takahashi. 2001. Interactions in the error-prone postreplication repair proteins hREV1, hREV3, and hREV7. J. Biol. Chem. 276:35644-35651.
30. Nair, D. T., R. E. Johnson, L. Prakash, S. Prakash, and A. K. Aggarwal. 2005. Rev1 employs a novel mechanism of DNA synthesis using a protein template. Science 309:2219-2222.
31. Nelson, J. R., P. E. Gibbs, A. M. Nowicka, D. C. Hinkle, and C. W. Lawrence. 2000. Evidence for a second function for Saccharomyces cerevisiae Rev1p. Mol. Microbiol. 37:549-554.
32. Nelson, J. R., C. W. Lawrence, and D. C. Hinkle. 1996. Deoxycytidyl transferase activity of yeast REV1 protein. Nature 382:729-731.
33. Nelson, J. R., C. W. Lawrence, and D. C. Hinkle. 1996. Thymine-thymine dimer bypass by yeast DNA polymerase zeta. Science 272:1646-1649.
34. Ohashi, E., Y. Murakumo, N. Kanjo, J. Akagi, C. Masutani, F. Hanaoka, and H. Ohmori. 2004. Interaction of hREV1 with three human Y-family DNA polymerases. Genes Cells 9:523-531.
35. Otsuka, C., D. Loakes, and K. Negishi. 2002. The role of deoxycytidyl transferase activity of yeast Rev1 protein in the bypass of abasic sites. Nucleic Acids Res. Suppl. 2:87-88.
36. Plosky, B. S., and R. Woodgate. 2004. Switching from high-fidelity replicases to low-fidelity lesion-bypass polymerases. Curr. Opin. Genet. Dev. 14:113-119.
37. Prakash, S., R. E. Johnson, and L. Prakash. 2005. Eukaryotic translesion synthesis DNA polymerases: specificity of structure and function. Annu. Rev. Biochem. 74:317-353.
38. Sherman, F. 2002. Guide to yeast genetics and molecular and cell biology, vol. 350. Academic Press, San Diego, Calif.
39. Sikorski, R. S., and P. Hieter. 1989. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122:19-27.
40. Takeuchi, R., M. Oshige, M. Uchida, G. Ishikawa, K. Takata, K. Shimanouchi, Y. Kanai, T. Ruike, H. Morioka, and K. Sakaguchi. 2004. Purification of Drosophila DNA polymerase zeta by REV1 protein-affinity chromatography. Biochem. J. 382:535-543.
41. Tissier, A., P. Kannouche, M. P. Reck, A. R. Lehmann, R. P. Fuchs, and A. Cordonnier. 2004. Co-localization in replication foci and interaction of human Y-family members, DNA polymerase pol eta and REV1 protein. DNA Repair (Amsterdam) 3:1503-1514.
42. Torpey, L. E., P. E. Gibbs, J. Nelson, and C. W. Lawrence. 1994. Cloning and sequence of REV7, a gene whose function is required for DNA damage-induced mutagenesis in Saccharomyces cerevisiae. Yeast 10:1503-1509.
43. Trincao, J., R. E. Johnson, C. R. Escalante, S. Prakash, L. Prakash, and A. K. Aggarwal. 2001. Structure of the catalytic core of S. cerevisiae DNA polymerase eta: implications for translesion DNA synthesis. Mol. Cell 8:417-426.
44. Venkitaraman, A. R. 2002. Cancer susceptibility and the functions of BRCA1 and BRCA2. Cell 108:171-182.
45. Washington, M. T., I. G. Minko, R. E. Johnson, L. Haracska, T. M. Harris, R. S. Lloyd, S. Prakash, and L. Prakash. 2004. Efficient and error-free replication past a minor-groove N2-guanine adduct by the sequential action of yeast Rev1 and DNA polymerase zeta. Mol. Cell. Biol. 24:6900-6906.
46. 2/M phase rather than S phase. Proc. Natl. Acad. Sci. USA 103:8971-8976.
47. Zhao, X., E. G. Muller, and R. Rothstein. 1998. A suppressor of two essential checkpoint genes identifies a novel protein that negatively affects dNTP pools. Mol. Cell 2:329-340.