-
1
-
-
0024320772
-
Identification of a sequence required for efficient packaging of human immunodeficiency virus type 1 RNA into virions
-
Lever A.M., Göttlinger H.T., Haseltine W.A., and Sodroski J.G. Identification of a sequence required for efficient packaging of human immunodeficiency virus type 1 RNA into virions. J. Virol 63 (1987) 4085-4087
-
(1987)
J. Virol
, vol.63
, pp. 4085-4087
-
-
Lever, A.M.1
Göttlinger, H.T.2
Haseltine, W.A.3
Sodroski, J.G.4
-
3
-
-
0025598002
-
Cis elements and trans-acting factors involved in the RNA dimerization of the human immunodeficiency virus HIV-1
-
Darlix J.L., Gabus C., Nugeyre M.T., Clavel F., and Barre-Sinussi F. Cis elements and trans-acting factors involved in the RNA dimerization of the human immunodeficiency virus HIV-1. J. Mol. Biol 216 (1990) 689-699
-
(1990)
J. Mol. Biol
, vol.216
, pp. 689-699
-
-
Darlix, J.L.1
Gabus, C.2
Nugeyre, M.T.3
Clavel, F.4
Barre-Sinussi, F.5
-
4
-
-
0001931483
-
Protein biosynthesis and assembly
-
Weiss R. (Ed), Cold Spring Harbor Laboratory Press, Plainview, NY
-
Dickson C., Eisenman R., Fan H., Hunter E., and Reich N. Protein biosynthesis and assembly. In: Weiss R. (Ed). RNA Tumor Viruses (1985), Cold Spring Harbor Laboratory Press, Plainview, NY 513-648
-
(1985)
RNA Tumor Viruses
, pp. 513-648
-
-
Dickson, C.1
Eisenman, R.2
Fan, H.3
Hunter, E.4
Reich, N.5
-
5
-
-
0029585377
-
First glimpse at structure-function relationships of the nucleocapsid protein of retroviruses
-
Darlix J.L., Lapadat-Tapolsky M., de Roquigny H., and Roques B.P. First glimpse at structure-function relationships of the nucleocapsid protein of retroviruses. J. Mol. Biol 254 (1995) 523-537
-
(1995)
J. Mol. Biol
, vol.254
, pp. 523-537
-
-
Darlix, J.L.1
Lapadat-Tapolsky, M.2
de Roquigny, H.3
Roques, B.P.4
-
6
-
-
0004131381
-
-
Cold Spring Harbor Laboratory Press, Plainview, NY
-
Coffin J.H., Hughes S.H., and Varmus H. In Retroviruses (1997), Cold Spring Harbor Laboratory Press, Plainview, NY
-
(1997)
In Retroviruses
-
-
Coffin, J.H.1
Hughes, S.H.2
Varmus, H.3
-
7
-
-
20544443261
-
Update of the drug resistance mutations in HIV-1: 2005
-
Johnson V.A., Brun-Vezinet F., Clotet B., Conway B., Kuritzkes D.R., Pillay D., Shapiro J.M., Telenti A., and Richman D.D. Update of the drug resistance mutations in HIV-1: 2005. Top. HIV Med 13 (2005) 51-57
-
(2005)
Top. HIV Med
, vol.13
, pp. 51-57
-
-
Johnson, V.A.1
Brun-Vezinet, F.2
Clotet, B.3
Conway, B.4
Kuritzkes, D.R.5
Pillay, D.6
Shapiro, J.M.7
Telenti, A.8
Richman, D.D.9
-
8
-
-
0031452514
-
HIV-1 acquires resistance to two classes of antiviral drugs through homologous recombination
-
Yusa K., Kavlick M.F., Kosalaraksa P., and Mitsuya H. HIV-1 acquires resistance to two classes of antiviral drugs through homologous recombination. Antivirus Res 36 (1997) 179-189
-
(1997)
Antivirus Res
, vol.36
, pp. 179-189
-
-
Yusa, K.1
Kavlick, M.F.2
Kosalaraksa, P.3
Mitsuya, H.4
-
9
-
-
0036639381
-
Footprinting, circular dichroism, and UV melting studies on neomycin B binding to the packaging region of human immunodeficiency virus type-1 RNA
-
McPike M.P., Sullivan J.M., Goodisman J., and Dabrowiak J.C. Footprinting, circular dichroism, and UV melting studies on neomycin B binding to the packaging region of human immunodeficiency virus type-1 RNA. Nucleic Acids Res 30 (2002) 2825-2831
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 2825-2831
-
-
McPike, M.P.1
Sullivan, J.M.2
Goodisman, J.3
Dabrowiak, J.C.4
-
10
-
-
0037462818
-
HIV-1 RNA dimerization initiation site is structurally similar to the ribosomal A site and binds aminoglycoside antibiotics
-
Ennifar E., Paillart J.C., Marquet R., Ehresmann B., Ehresmann C., Dumas P., and Walter P. HIV-1 RNA dimerization initiation site is structurally similar to the ribosomal A site and binds aminoglycoside antibiotics. J. Biol. Chem 278 (2003) 2723-2730
-
(2003)
J. Biol. Chem
, vol.278
, pp. 2723-2730
-
-
Ennifar, E.1
Paillart, J.C.2
Marquet, R.3
Ehresmann, B.4
Ehresmann, C.5
Dumas, P.6
Walter, P.7
-
11
-
-
0036837080
-
Footprinting and circular dichroism studies on paromomycin binding to the packaging region of human immunodeficiency virus type-1
-
McPike M.P., Goodisman J., and Dabrowiak J.C. Footprinting and circular dichroism studies on paromomycin binding to the packaging region of human immunodeficiency virus type-1. Bioorg. Med. Chem 10 (2002) 3663-3672
-
(2002)
Bioorg. Med. Chem
, vol.10
, pp. 3663-3672
-
-
McPike, M.P.1
Goodisman, J.2
Dabrowiak, J.C.3
-
12
-
-
33644994792
-
Inhibitory effects of archetypical nucleic acid ligands on the interactions of HIV-1 nucleocapsid protein with elements of Ψ-RNA
-
Turner K.B., Hagan N.A., and Fabris D. Inhibitory effects of archetypical nucleic acid ligands on the interactions of HIV-1 nucleocapsid protein with elements of Ψ-RNA. Nucleic Acids Res 34 (2006) 1305-1316
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1305-1316
-
-
Turner, K.B.1
Hagan, N.A.2
Fabris, D.3
-
13
-
-
33748168091
-
Electrospray ion source. Another variation on the free-jet theme
-
Yamashita M., and Fenn J.B. Electrospray ion source. Another variation on the free-jet theme. J. Phys. Chem 88 (1984) 4671-4675
-
(1984)
J. Phys. Chem
, vol.88
, pp. 4671-4675
-
-
Yamashita, M.1
Fenn, J.B.2
-
14
-
-
0001681723
-
Extraction of ions from solutions under atmospheric pressure: A method of mass spectrometric analysis of bioorganic compounds
-
Aleksandrov M.L., Gall L.N., Krasnov V.N., Nikolaev V.I., Pavlenko V.A., and Shkurov V.A. Extraction of ions from solutions under atmospheric pressure: A method of mass spectrometric analysis of bioorganic compounds. Doklady Akademii Nauk 277 379 (1984) 383
-
(1984)
Doklady Akademii Nauk
, vol.277
, Issue.379
, pp. 383
-
-
Aleksandrov, M.L.1
Gall, L.N.2
Krasnov, V.N.3
Nikolaev, V.I.4
Pavlenko, V.A.5
Shkurov, V.A.6
-
15
-
-
0001268221
-
Fourier transform ion cyclotron resonance
-
Comisarow M.B., and Marshall A.G. Fourier transform ion cyclotron resonance. Chem. Phys. Lett 25 (1974) 282-283
-
(1974)
Chem. Phys. Lett
, vol.25
, pp. 282-283
-
-
Comisarow, M.B.1
Marshall, A.G.2
-
16
-
-
0031623267
-
Fourier transform ion cyclotron resonance mass spectrometry: A primer
-
Marshall A.G., Hendrickson C.L., and Jackson G.S. Fourier transform ion cyclotron resonance mass spectrometry: A primer. Mass Spectrom. Rev 17 (1998) 1-35
-
(1998)
Mass Spectrom. Rev
, vol.17
, pp. 1-35
-
-
Marshall, A.G.1
Hendrickson, C.L.2
Jackson, G.S.3
-
17
-
-
0001413545
-
Detection of noncovalent receptor-ligand complexes by mass spectrometry
-
Ganem B., Li Y.T., and Henion J.D. Detection of noncovalent receptor-ligand complexes by mass spectrometry. J. Am. Chem. Soc 113 (1991) 6294-6296
-
(1991)
J. Am. Chem. Soc
, vol.113
, pp. 6294-6296
-
-
Ganem, B.1
Li, Y.T.2
Henion, J.D.3
-
18
-
-
84936492692
-
Mass spectrometric detection of the noncovalent GDP-bound conformational state of the human H-ras protein
-
Ganguly A.K., Pramanik B.N., Tsarbopoulos A., Covey T.R., Huang E., and Fuhrman S.A. Mass spectrometric detection of the noncovalent GDP-bound conformational state of the human H-ras protein. J. Am. Chem. Soc 114 (1992) 6559-6560
-
(1992)
J. Am. Chem. Soc
, vol.114
, pp. 6559-6560
-
-
Ganguly, A.K.1
Pramanik, B.N.2
Tsarbopoulos, A.3
Covey, T.R.4
Huang, E.5
Fuhrman, S.A.6
-
19
-
-
0030621966
-
Studying noncovalent protein complexes by electrospray ionization mass spectrometry
-
Loo J.A. Studying noncovalent protein complexes by electrospray ionization mass spectrometry. Mass Spectrom. Rev 16 (1997) 1-23
-
(1997)
Mass Spectrom. Rev
, vol.16
, pp. 1-23
-
-
Loo, J.A.1
-
20
-
-
0035263299
-
Electrospray ionization mass spectrometry of oligonucleotide complexes with drugs, metals, and proteins
-
Beck J.L., Colgrave M.L., Ralph S.F., and Sheil M.M. Electrospray ionization mass spectrometry of oligonucleotide complexes with drugs, metals, and proteins. Mass Spectrom. Rev 20 (2001) 61-87
-
(2001)
Mass Spectrom. Rev
, vol.20
, pp. 61-87
-
-
Beck, J.L.1
Colgrave, M.L.2
Ralph, S.F.3
Sheil, M.M.4
-
21
-
-
0035241691
-
Analysis of noncovalent complexes of DNA and RNA by mass spectrometry
-
Hofstadler S.A., and Griffey R.H. Analysis of noncovalent complexes of DNA and RNA by mass spectrometry. Chem. Rev 101 (2001) 377-390
-
(2001)
Chem. Rev
, vol.101
, pp. 377-390
-
-
Hofstadler, S.A.1
Griffey, R.H.2
-
22
-
-
0028434176
-
Studies of noncovalent interactions of actinomycin D with single-stranded oligodeoxynucleotides by ion spray mass spectrometry and tandem mass spectrometry
-
Hsieh Y.L., Li Y.T., Henion J.D., and Ganem B. Studies of noncovalent interactions of actinomycin D with single-stranded oligodeoxynucleotides by ion spray mass spectrometry and tandem mass spectrometry. Biol. Mass Spectrom 23 (1994) 272-276
-
(1994)
Biol. Mass Spectrom
, vol.23
, pp. 272-276
-
-
Hsieh, Y.L.1
Li, Y.T.2
Henion, J.D.3
Ganem, B.4
-
23
-
-
0028447406
-
Observation of duplex DNA-drug noncovalent complexes by electrospray mass spectrometry
-
Gale D.C., Goodlett D.R., Light-Wahl K.J., and Smith R.D. Observation of duplex DNA-drug noncovalent complexes by electrospray mass spectrometry. J. Am. Chem. Soc 116 (1994) 6027-6028
-
(1994)
J. Am. Chem. Soc
, vol.116
, pp. 6027-6028
-
-
Gale, D.C.1
Goodlett, D.R.2
Light-Wahl, K.J.3
Smith, R.D.4
-
24
-
-
0030718606
-
Noncovalent complexes between DNA-binding drugs and double-stranded deoxynucleotides: A study by ionspray mass spectrometry
-
Triolo A., Arcamone F.M., Raffaelli A., and Salvadori P. Noncovalent complexes between DNA-binding drugs and double-stranded deoxynucleotides: A study by ionspray mass spectrometry. J. Mass Spectrom 32 (1997) 1186-1194
-
(1997)
J. Mass Spectrom
, vol.32
, pp. 1186-1194
-
-
Triolo, A.1
Arcamone, F.M.2
Raffaelli, A.3
Salvadori, P.4
-
25
-
-
0035543078
-
Positive ion electrospray ionization mass spectrometry of double-stranded DNA/drug complexes
-
Gupta R., Kapur A., Beck J.L., and Sheil M.M. Positive ion electrospray ionization mass spectrometry of double-stranded DNA/drug complexes. Rapid Commun. Mass Spectrom 15 (2001) 2472-2480
-
(2001)
Rapid Commun. Mass Spectrom
, vol.15
, pp. 2472-2480
-
-
Gupta, R.1
Kapur, A.2
Beck, J.L.3
Sheil, M.M.4
-
26
-
-
12244263547
-
Tight binding of the antitumor drug ditercalinium to quadruplex DNA
-
Carrasco C., Rosu F., Gabelica V., Houssier C., De Pauw E., Garbay-Jaureguiberry C., Roques B., Wilson W.D., Chaires J.B., Waring M.J., and Bailly C. Tight binding of the antitumor drug ditercalinium to quadruplex DNA. Chem. Biochem 3 (2002) 1235-1241
-
(2002)
Chem. Biochem
, vol.3
, pp. 1235-1241
-
-
Carrasco, C.1
Rosu, F.2
Gabelica, V.3
Houssier, C.4
De Pauw, E.5
Garbay-Jaureguiberry, C.6
Roques, B.7
Wilson, W.D.8
Chaires, J.B.9
Waring, M.J.10
Bailly, C.11
-
27
-
-
0242609879
-
Telomestatin-induced stabilization of the human telomeric DNA quadruplex monitored by electrospray mass spectrometry
-
Rosu F., Gabelica V., Shin-ya K., and De Pauw E. Telomestatin-induced stabilization of the human telomeric DNA quadruplex monitored by electrospray mass spectrometry. Chem. Commun. (Camb.) 21 (2003) 2702-2703
-
(2003)
Chem. Commun. (Camb.)
, vol.21
, pp. 2702-2703
-
-
Rosu, F.1
Gabelica, V.2
Shin-ya, K.3
De Pauw, E.4
-
28
-
-
0042318475
-
Selective interaction of ethidium derivatives with quadruplexes: An equilibrium dialysis and electrospray ionization mass spectrometry analysis
-
Rosu F., De Pauw E., Guittat L., Alberti P., Lacroix L., Mailliet P., Riou J.F., and Mergny J.L. Selective interaction of ethidium derivatives with quadruplexes: An equilibrium dialysis and electrospray ionization mass spectrometry analysis. Biochemistry 42 (2003) 10361-10371
-
(2003)
Biochemistry
, vol.42
, pp. 10361-10371
-
-
Rosu, F.1
De Pauw, E.2
Guittat, L.3
Alberti, P.4
Lacroix, L.5
Mailliet, P.6
Riou, J.F.7
Mergny, J.L.8
-
29
-
-
0031005114
-
Discovery of selective, small-molecule inhibitors of RNA complexes-I. The Tat protein/TAR RNA complexes required for HIV-1 transcription
-
Mei H.Y., Mack D., Galan A.A., Halim N.S., Heldsinger A., Loo J.A., Moreland D.W., Sannes-Lowery K.A., Sharmeen L., Truong H.N., and Czarnik A.W. Discovery of selective, small-molecule inhibitors of RNA complexes-I. The Tat protein/TAR RNA complexes required for HIV-1 transcription. Bioorg. Med. Chem 5 (1997) 1173-1184
-
(1997)
Bioorg. Med. Chem
, vol.5
, pp. 1173-1184
-
-
Mei, H.Y.1
Mack, D.2
Galan, A.A.3
Halim, N.S.4
Heldsinger, A.5
Loo, J.A.6
Moreland, D.W.7
Sannes-Lowery, K.A.8
Sharmeen, L.9
Truong, H.N.10
Czarnik, A.W.11
-
30
-
-
0032491152
-
Inhibitors of protein-RNA complexation that target the RNA: Specific recognition of human immunodeficiency virus type 1 TAR RNA by small organic molecules
-
Mei H.Y., Cui M., Heldsinger A., Lemrow S.M., Loo J.A., Sannes-Lowery K.A., Sharmeen L., and Czarnik A.W. Inhibitors of protein-RNA complexation that target the RNA: Specific recognition of human immunodeficiency virus type 1 TAR RNA by small organic molecules. Biochemistry 37 (1998) 14204-14212
-
(1998)
Biochemistry
, vol.37
, pp. 14204-14212
-
-
Mei, H.Y.1
Cui, M.2
Heldsinger, A.3
Lemrow, S.M.4
Loo, J.A.5
Sannes-Lowery, K.A.6
Sharmeen, L.7
Czarnik, A.W.8
-
31
-
-
0034684262
-
Characterization of Low-Affinity Complexes between RNA and Small Molecules Using Electrospray Ionization Mass Spectrometry
-
Griffey R.H., Sannes-Lowery K.A., Drader J.J., Mohan V., Swayze E.E., and Hofstadler S.A. Characterization of Low-Affinity Complexes between RNA and Small Molecules Using Electrospray Ionization Mass Spectrometry. J. Am. Chem. Soc 122 (2000) 9933-9938
-
(2000)
J. Am. Chem. Soc
, vol.122
, pp. 9933-9938
-
-
Griffey, R.H.1
Sannes-Lowery, K.A.2
Drader, J.J.3
Mohan, V.4
Swayze, E.E.5
Hofstadler, S.A.6
-
32
-
-
8844264639
-
Identification of a novel noncarbohydrate molecule that binds to the ribosomal A-site RNA
-
Maddaford S.P., Motamed M., Turner K.B., Choi M.S.K., Ramnauth J., Rakhit S., Hudgins R.R., Fabris D., and Johnson P.E. Identification of a novel noncarbohydrate molecule that binds to the ribosomal A-site RNA. Bioorg. Med. Chem. Lett 14 (2004) 5987-5990
-
(2004)
Bioorg. Med. Chem. Lett
, vol.14
, pp. 5987-5990
-
-
Maddaford, S.P.1
Motamed, M.2
Turner, K.B.3
Choi, M.S.K.4
Ramnauth, J.5
Rakhit, S.6
Hudgins, R.R.7
Fabris, D.8
Johnson, P.E.9
-
33
-
-
0032763686
-
Observation of daunomycin and nogalamycin complexes with duplex DNA using electrospray ionization mass spectrometry
-
Kapur A., Beck J.L., and Sheil M.M. Observation of daunomycin and nogalamycin complexes with duplex DNA using electrospray ionization mass spectrometry. Rapid Commun. Mass Spectrom 13 (1999) 2489-2497
-
(1999)
Rapid Commun. Mass Spectrom
, vol.13
, pp. 2489-2497
-
-
Kapur, A.1
Beck, J.L.2
Sheil, M.M.3
-
34
-
-
0033404871
-
Interaction between antitumor drugs and a double-stranded oligonucleotide studied by electrospray ionization mass spectrometry
-
Gabelica V., De Pauw E., and Rosu F. Interaction between antitumor drugs and a double-stranded oligonucleotide studied by electrospray ionization mass spectrometry. J. Mass Spectrom 34 (1999) 1328-1337
-
(1999)
J. Mass Spectrom
, vol.34
, pp. 1328-1337
-
-
Gabelica, V.1
De Pauw, E.2
Rosu, F.3
-
35
-
-
0033590014
-
Studying aminoglycoside antibiotic binding to HIV-1 TAR RNA by electrospray ionization mass spectrometry
-
Sannes-Lowery K.A., Mei H.-Y., and Loo J.A. Studying aminoglycoside antibiotic binding to HIV-1 TAR RNA by electrospray ionization mass spectrometry. Int. J. Mass Spectrom. Ion Processes 193 (1999) 115-122
-
(1999)
Int. J. Mass Spectrom. Ion Processes
, vol.193
, pp. 115-122
-
-
Sannes-Lowery, K.A.1
Mei, H.-Y.2
Loo, J.A.3
-
36
-
-
0033566617
-
Multiplexed screening of neutral mass-tagged RNA targets against ligand libraries with electrospray ionization FTICR MS: A paradigm for high-throughput affinity screening
-
Hofstadler S.A., Sannes-Lowery K.A., Crooke S.T., Ecker D.J., Sasmor H., Manalili S., and Griffey R.H. Multiplexed screening of neutral mass-tagged RNA targets against ligand libraries with electrospray ionization FTICR MS: A paradigm for high-throughput affinity screening. Anal. Chem 71 (1999) 3436-3440
-
(1999)
Anal. Chem
, vol.71
, pp. 3436-3440
-
-
Hofstadler, S.A.1
Sannes-Lowery, K.A.2
Crooke, S.T.3
Ecker, D.J.4
Sasmor, H.5
Manalili, S.6
Griffey, R.H.7
-
37
-
-
0033977496
-
Noncovalent Complexes between DNA-Binding Drugs and Double-Stranded Oligodeoxynucleotides: A Study by ESI Ion-Trap Mass Spectrometry
-
Wan K.X., Shibue T., and Gross M.L. Noncovalent Complexes between DNA-Binding Drugs and Double-Stranded Oligodeoxynucleotides: A Study by ESI Ion-Trap Mass Spectrometry. J. Am. Chem. Soc 122 (2000) 300-307
-
(2000)
J. Am. Chem. Soc
, vol.122
, pp. 300-307
-
-
Wan, K.X.1
Shibue, T.2
Gross, M.L.3
-
38
-
-
0033621114
-
Determinants of aminoglycoside-binding specificity for rRNA by using mass spectrometry
-
Griffey R.H., Hofstadler S.A., Sannes-Lowery K.A., Ecker D.J., and Crooke S.T. Determinants of aminoglycoside-binding specificity for rRNA by using mass spectrometry. Proc. Nat. Acad. Sci. U.S.A 96 (1999) 10129-10133
-
(1999)
Proc. Nat. Acad. Sci. U.S.A
, vol.96
, pp. 10129-10133
-
-
Griffey, R.H.1
Hofstadler, S.A.2
Sannes-Lowery, K.A.3
Ecker, D.J.4
Crooke, S.T.5
-
39
-
-
0034193686
-
Measuring dissociation constants of RNA and aminoglycoside antibiotics by electrospray ionization mass spectrometry
-
Sannes-Lowery K.A., Griffey R.H., and Hofstadler S.A. Measuring dissociation constants of RNA and aminoglycoside antibiotics by electrospray ionization mass spectrometry. Anal. Biochem 280 (2000) 264-271
-
(2000)
Anal. Biochem
, vol.280
, pp. 264-271
-
-
Sannes-Lowery, K.A.1
Griffey, R.H.2
Hofstadler, S.A.3
-
40
-
-
0037102402
-
Determination of affinity, stoichiometry, and sequence selectivity of minor groove binder complexes with double-stranded oligodeoxynucleotides by electrospray ionization mass spectrometry
-
Rosu F., Gabelica V., Houssier C., and De Pauw E. Determination of affinity, stoichiometry, and sequence selectivity of minor groove binder complexes with double-stranded oligodeoxynucleotides by electrospray ionization mass spectrometry. Nucleic Acids Res 30 (2002) e82
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Rosu, F.1
Gabelica, V.2
Houssier, C.3
De Pauw, E.4
-
41
-
-
2442615084
-
High throughput screening of library compounds against an oligonucleotide substructure of an RNA target
-
Gooding K.B., Higgs R., Hodge B., Stauffer E., Heinz B., McKnight K., Phipps K., Shapiro M., Winkler M., Ng W.L., and Julian R.K. High throughput screening of library compounds against an oligonucleotide substructure of an RNA target. J. Am. Soc. Mass Spectrom 15 (2004) 884-892
-
(2004)
J. Am. Soc. Mass Spectrom
, vol.15
, pp. 884-892
-
-
Gooding, K.B.1
Higgs, R.2
Hodge, B.3
Stauffer, E.4
Heinz, B.5
McKnight, K.6
Phipps, K.7
Shapiro, M.8
Winkler, M.9
Ng, W.L.10
Julian, R.K.11
-
42
-
-
0023187427
-
Fast atom bombardment combined with tandem mass spectrometry for determining structures of small oligonucleotides
-
Cerny R.L., Tomer K.B., Gross M.L., and Grotjahn L. Fast atom bombardment combined with tandem mass spectrometry for determining structures of small oligonucleotides. Anal. Biochem 165 (1987) 175-182
-
(1987)
Anal. Biochem
, vol.165
, pp. 175-182
-
-
Cerny, R.L.1
Tomer, K.B.2
Gross, M.L.3
Grotjahn, L.4
-
43
-
-
0000529864
-
Decompositions of multiply charged oligonucleotide anions
-
McLuckey S.A., and Habibi-Goudarzi S. Decompositions of multiply charged oligonucleotide anions. J. Am. Chem. Soc 115 (1993) 12085-12095
-
(1993)
J. Am. Chem. Soc
, vol.115
, pp. 12085-12095
-
-
McLuckey, S.A.1
Habibi-Goudarzi, S.2
-
44
-
-
0027935280
-
Rapid sequencing of oligonucleotides by high-resolution mass spectrometry
-
Little D.P., Chorush R.A., Spier J.P., Senko M.W., Kelleher N.L., and McLafferty F.W. Rapid sequencing of oligonucleotides by high-resolution mass spectrometry. J. Am. Chem. Soc 116 (1994) 4893-4897
-
(1994)
J. Am. Chem. Soc
, vol.116
, pp. 4893-4897
-
-
Little, D.P.1
Chorush, R.A.2
Spier, J.P.3
Senko, M.W.4
Kelleher, N.L.5
McLafferty, F.W.6
-
45
-
-
0030200945
-
Interpretation of oligonucleotide mass spectra for determination of sequence using electrospray ionization and tandem mass spectrometry
-
Ni J., Pomerantz C., Rozenski J., Zhang Y., and McCloskey J.A. Interpretation of oligonucleotide mass spectra for determination of sequence using electrospray ionization and tandem mass spectrometry. Anal. Chem 68 (1996) 1989-1999
-
(1996)
Anal. Chem
, vol.68
, pp. 1989-1999
-
-
Ni, J.1
Pomerantz, C.2
Rozenski, J.3
Zhang, Y.4
McCloskey, J.A.5
-
46
-
-
0028898603
-
Characterization of oligonucleotides and nucleic acids by mass spectrometry
-
Limbach P.A., Crain P.F., and McCloskey J.A. Characterization of oligonucleotides and nucleic acids by mass spectrometry. Curr. Opin. Biotechnol 6 (1995) 96-102
-
(1995)
Curr. Opin. Biotechnol
, vol.6
, pp. 96-102
-
-
Limbach, P.A.1
Crain, P.F.2
McCloskey, J.A.3
-
47
-
-
0027423649
-
A novel method for the determination of post-transcriptional modification in RNA by mass spectrometry
-
Kowalak J.A., Pomerantz S.C., Crain P.F., and McCloskey J.A. A novel method for the determination of post-transcriptional modification in RNA by mass spectrometry. Nucleic Acids Res 21 (1993) 4577-4585
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 4577-4585
-
-
Kowalak, J.A.1
Pomerantz, S.C.2
Crain, P.F.3
McCloskey, J.A.4
-
48
-
-
0029025875
-
Mass and sequence verification of modified oligonucleotides using electrospray tandem mass spectrometry
-
Barry J.P., Vouros P., Van Schepdael A., and Law S.-J. Mass and sequence verification of modified oligonucleotides using electrospray tandem mass spectrometry. J. Mass Spectrom 30 (1995) 993-1006
-
(1995)
J. Mass Spectrom
, vol.30
, pp. 993-1006
-
-
Barry, J.P.1
Vouros, P.2
Van Schepdael, A.3
Law, S.-J.4
-
49
-
-
0030982858
-
High sensitivity and fragmentation specificity in the analysis of drug-DNA adducts by electrospray tandem mass spectrometry
-
Iannitti P., Sheil M.M., and Wickham G. High sensitivity and fragmentation specificity in the analysis of drug-DNA adducts by electrospray tandem mass spectrometry. J. Am. Chem. Soc 119 (1997) 1490-1491
-
(1997)
J. Am. Chem. Soc
, vol.119
, pp. 1490-1491
-
-
Iannitti, P.1
Sheil, M.M.2
Wickham, G.3
-
50
-
-
0035890653
-
Post-transcriptional modification in archaeal tRNAs: Identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales
-
McCloskey J.A., Graham D.E., Zhou S., Crain P.F., Ibba M., Konisky J., Soll D., and Olsen G.J. Post-transcriptional modification in archaeal tRNAs: Identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales. Nucleic Acids Res 29 (2001) 4699-4706
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4699-4706
-
-
McCloskey, J.A.1
Graham, D.E.2
Zhou, S.3
Crain, P.F.4
Ibba, M.5
Konisky, J.6
Soll, D.7
Olsen, G.J.8
-
51
-
-
2342513499
-
Top-down characterization of nucleic acids modified by structural probes using high-resolution tandem mass spectrometry and automated data interpretation
-
Kellersberger K.A., Yu E., Kruppa G.H., Young M.M., and Fabris D. Top-down characterization of nucleic acids modified by structural probes using high-resolution tandem mass spectrometry and automated data interpretation. Anal. Chem 76 (2004) 2438-2445
-
(2004)
Anal. Chem
, vol.76
, pp. 2438-2445
-
-
Kellersberger, K.A.1
Yu, E.2
Kruppa, G.H.3
Young, M.M.4
Fabris, D.5
-
52
-
-
0000403647
-
Characterization of noncovalent complexes formed between minor groove binding molecules and duplex DNA by electrospray ionization-mass spectrometry
-
Gale D.C., and Smith R.D. Characterization of noncovalent complexes formed between minor groove binding molecules and duplex DNA by electrospray ionization-mass spectrometry. J. Am. Soc. Mass Spectrom 6 (1995) 1154-1164
-
(1995)
J. Am. Soc. Mass Spectrom
, vol.6
, pp. 1154-1164
-
-
Gale, D.C.1
Smith, R.D.2
-
53
-
-
0034096809
-
Gas phase thermal denaturation of an oligonucleotide duplex and its complexes with minor groove binders
-
Gabelica V., Rosu F., Houssier C., and De Pauw E. Gas phase thermal denaturation of an oligonucleotide duplex and its complexes with minor groove binders. Rapid Commun. Mass Spectrom 14 (2000) 464-467
-
(2000)
Rapid Commun. Mass Spectrom
, vol.14
, pp. 464-467
-
-
Gabelica, V.1
Rosu, F.2
Houssier, C.3
De Pauw, E.4
-
54
-
-
0034478602
-
Gas-phase stability of double-stranded oligodeoxynucleotides and their noncovalent complexes with DNA-binding drugs as revealed by collisional activation in an ion trap
-
Wan K.X., Gross M.L., and Shibue T. Gas-phase stability of double-stranded oligodeoxynucleotides and their noncovalent complexes with DNA-binding drugs as revealed by collisional activation in an ion trap. J. Am. Soc. Mass Spectrom 11 (2000) 450-457
-
(2000)
J. Am. Soc. Mass Spectrom
, vol.11
, pp. 450-457
-
-
Wan, K.X.1
Gross, M.L.2
Shibue, T.3
-
55
-
-
0036558174
-
Investigation of quadruplex oligonucleotide-drug interaction by electrospray ionization mass spectrometry
-
David W.M., Brodbelt J.S., Kerwin S.M., and Thomas P.W. Investigation of quadruplex oligonucleotide-drug interaction by electrospray ionization mass spectrometry. Anal. Chem 74 (2002) 2029-2033
-
(2002)
Anal. Chem
, vol.74
, pp. 2029-2033
-
-
David, W.M.1
Brodbelt, J.S.2
Kerwin, S.M.3
Thomas, P.W.4
-
56
-
-
33645110876
-
Evaluation of binding of perylene diimide and benzannulated perylene diimide ligands to DNA by electrospray mass spectrometry
-
Mazzitelli C.L., Brodbelt J.S., Kern J.T., Rodriguez M., and Kerwin S.M. Evaluation of binding of perylene diimide and benzannulated perylene diimide ligands to DNA by electrospray mass spectrometry. J. Am. Soc. Mass Spectrom 17 (2006) 593-604
-
(2006)
J. Am. Soc. Mass Spectrom
, vol.17
, pp. 593-604
-
-
Mazzitelli, C.L.1
Brodbelt, J.S.2
Kern, J.T.3
Rodriguez, M.4
Kerwin, S.M.5
-
57
-
-
0033585581
-
Targeted site-specific gas-phase cleavage of oligoribonucleotides. Application in mass spectrometry-based identification of ligand binding sites
-
Griffey R.H., Greig M.J., Haoyun A., Sasmor H., and Manalili S. Targeted site-specific gas-phase cleavage of oligoribonucleotides. Application in mass spectrometry-based identification of ligand binding sites. J. Am. Chem. Soc 121 (1999) 474-475
-
(1999)
J. Am. Chem. Soc
, vol.121
, pp. 474-475
-
-
Griffey, R.H.1
Greig, M.J.2
Haoyun, A.3
Sasmor, H.4
Manalili, S.5
-
59
-
-
0025780005
-
Sustained off-resonance irradiation for collision-activated dissociation involving Fourier transform mass spectrometry. Collision-activated dissociation technique that emulates infrared multiphoton dissociation
-
Gauthier J.W., Trautman T.R., and Jacobson D.B. Sustained off-resonance irradiation for collision-activated dissociation involving Fourier transform mass spectrometry. Collision-activated dissociation technique that emulates infrared multiphoton dissociation. Anal. Chim. Acta 246 211 (1991) 225
-
(1991)
Anal. Chim. Acta
, vol.246
, Issue.211
, pp. 225
-
-
Gauthier, J.W.1
Trautman, T.R.2
Jacobson, D.B.3
-
60
-
-
0001004129
-
Mass selection of ions in a Fourier transform ion cyclotron resonance trap using correlated harmonic excitation fields (CHEF)
-
de Koning L.J., Nibbering N.M.M., van Orden S.L., and Laukien F.H. Mass selection of ions in a Fourier transform ion cyclotron resonance trap using correlated harmonic excitation fields (CHEF). Int. J. Mass Spectrom. Ion Processes 16566 (1997) 209-219
-
(1997)
Int. J. Mass Spectrom. Ion Processes
, vol.16566
, pp. 209-219
-
-
de Koning, L.J.1
Nibbering, N.M.M.2
van Orden, S.L.3
Laukien, F.H.4
-
61
-
-
0028774203
-
Collisional activation of large multiply charged ions using Fourier transform mass spectrometry
-
Senko M.W., Speir J.P., and McLafferty F.W. Collisional activation of large multiply charged ions using Fourier transform mass spectrometry. Anal. Chem 66 (1994) 2801-2808
-
(1994)
Anal. Chem
, vol.66
, pp. 2801-2808
-
-
Senko, M.W.1
Speir, J.P.2
McLafferty, F.W.3
-
62
-
-
11644261806
-
Automated docking using a Lamarckian genetic algorithm and empirical binding free energy function
-
Morris G.M., Goodsell D.S., Halliday R.S., Huey R., Hart W., Belew R.K., and Olson A.J. Automated docking using a Lamarckian genetic algorithm and empirical binding free energy function. J. Comp. Chem 19 (1998) 1639-1662
-
(1998)
J. Comp. Chem
, vol.19
, pp. 1639-1662
-
-
Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.5
Belew, R.K.6
Olson, A.J.7
-
63
-
-
0042820036
-
A direct mass spectrometric determination of the stoichiometry and binding affinity of the complexes between HIV-1 nucleocapsid protein and RNA stem-loops hairpins of the HIV-1 Ψ-recognition element
-
Hagan N., and Fabris D. A direct mass spectrometric determination of the stoichiometry and binding affinity of the complexes between HIV-1 nucleocapsid protein and RNA stem-loops hairpins of the HIV-1 Ψ-recognition element. Biochemistry 42 (2003) 10736-10745
-
(2003)
Biochemistry
, vol.42
, pp. 10736-10745
-
-
Hagan, N.1
Fabris, D.2
-
64
-
-
0034716939
-
NMR structure of stem-loop SL2 of the HIV-1 psi RNA packaging signal reveals a novel A-U-A base-triple platform
-
Amarasinghe G.K., De Guzman R.N., Turner R.B., and Summers M.F. NMR structure of stem-loop SL2 of the HIV-1 psi RNA packaging signal reveals a novel A-U-A base-triple platform. J. Mol. Biol 299 (2000) 145-156
-
(2000)
J. Mol. Biol
, vol.299
, pp. 145-156
-
-
Amarasinghe, G.K.1
De Guzman, R.N.2
Turner, R.B.3
Summers, M.F.4
-
65
-
-
0032475827
-
Three-dimensional folding of an RNA hairpin required for packaging HIV-1
-
Pappalardo L., Kerwood D.J., Pelczer I., and Borer P.N. Three-dimensional folding of an RNA hairpin required for packaging HIV-1. J. Mol. Biol 282 (1998) 801-818
-
(1998)
J. Mol. Biol
, vol.282
, pp. 801-818
-
-
Pappalardo, L.1
Kerwood, D.J.2
Pelczer, I.3
Borer, P.N.4
-
66
-
-
0035807848
-
Structure of SL-4 from the HIV-1 packaging signal
-
Kerwood D.J., Cavaluzzi M.J., and Borer P.N. Structure of SL-4 from the HIV-1 packaging signal. Biochemistry 40 (2001) 14518-14529
-
(2001)
Biochemistry
, vol.40
, pp. 14518-14529
-
-
Kerwood, D.J.1
Cavaluzzi, M.J.2
Borer, P.N.3
-
67
-
-
0034636984
-
NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the Ψ-RNA packaging signal. Implications for genome recognition
-
Amarasinghe G.K., De Guzman R.N., Turner R.B., Chancellor K.J., Wu Z.R., and Summers M.F. NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the Ψ-RNA packaging signal. Implications for genome recognition. J. Mol. Biol 301 (2000) 491-511
-
(2000)
J. Mol. Biol
, vol.301
, pp. 491-511
-
-
Amarasinghe, G.K.1
De Guzman, R.N.2
Turner, R.B.3
Chancellor, K.J.4
Wu, Z.R.5
Summers, M.F.6
-
68
-
-
2242469712
-
Structure of the HIV-1 nucleocapsid protein bound to the SL-3 Ψ-RNA recognition element
-
De Guzman R.N., Wu Z.R., Stalling C.C., Pappalardo L., Borer P.N., and Summers M.F. Structure of the HIV-1 nucleocapsid protein bound to the SL-3 Ψ-RNA recognition element. Science 279 (1998) 384-388
-
(1998)
Science
, vol.279
, pp. 384-388
-
-
De Guzman, R.N.1
Wu, Z.R.2
Stalling, C.C.3
Pappalardo, L.4
Borer, P.N.5
Summers, M.F.6
-
69
-
-
0035154953
-
RNA fragmentation studied in a matrix-assisted laser desorption/ionization tandem quadrupole/orthogonal time-of-flight mass spectrometer
-
Kirpekar F., and Krogh T.N. RNA fragmentation studied in a matrix-assisted laser desorption/ionization tandem quadrupole/orthogonal time-of-flight mass spectrometer. Rapid Commun. Mass Spectrom 15 (2001) 8-14
-
(2001)
Rapid Commun. Mass Spectrom
, vol.15
, pp. 8-14
-
-
Kirpekar, F.1
Krogh, T.N.2
-
70
-
-
23044490796
-
Gas-phase dissociation of oligoribonucleotides and their analogs studied by electrospray ionization tandem mass spectrometry
-
Tromp J.M., and Schurch S. Gas-phase dissociation of oligoribonucleotides and their analogs studied by electrospray ionization tandem mass spectrometry. J. Am. Soc. Mass Spectrom 16 (2005) 1262-1268
-
(2005)
J. Am. Soc. Mass Spectrom
, vol.16
, pp. 1262-1268
-
-
Tromp, J.M.1
Schurch, S.2
-
71
-
-
0029825658
-
Structure of the A-site of E. coli. 16S rRNA complexed with an aminoglycoside antibiotic
-
Fourmy D., Recht M.I., Blanchard S.C., and Puglisi J.D. Structure of the A-site of E. coli. 16S rRNA complexed with an aminoglycoside antibiotic. Science 274 (1996) 1367-1371
-
(1996)
Science
, vol.274
, pp. 1367-1371
-
-
Fourmy, D.1
Recht, M.I.2
Blanchard, S.C.3
Puglisi, J.D.4
-
72
-
-
17244378938
-
2-Deoxystreptamine: Central scaffold of aminoglycoside antibiotics
-
Busscher G.F., Rutjes F.P.J.T., and van Delft F.L. 2-Deoxystreptamine: Central scaffold of aminoglycoside antibiotics. Chem. Rev 105 (2005) 775-791
-
(2005)
Chem. Rev
, vol.105
, pp. 775-791
-
-
Busscher, G.F.1
Rutjes, F.P.J.T.2
van Delft, F.L.3
-
73
-
-
0023665601
-
Single base bulges in small RNA hairpins enhance ethidium binding and promote allosteric transition
-
White S.A., and Draper D.E. Single base bulges in small RNA hairpins enhance ethidium binding and promote allosteric transition. Nucleic Acids Res 15 (1987) 4049-4064
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 4049-4064
-
-
White, S.A.1
Draper, D.E.2
-
74
-
-
0037028181
-
A kinetic study of the intercalation of ethidium bromide into poly(A)·poly(U)
-
D'Amico M.L., Paiotta V., Secco F., and Venturini M. A kinetic study of the intercalation of ethidium bromide into poly(A)·poly(U). J. Phys. Chem. B 106 (2002) 12635-12641
-
(2002)
J. Phys. Chem. B
, vol.106
, pp. 12635-12641
-
-
D'Amico, M.L.1
Paiotta, V.2
Secco, F.3
Venturini, M.4
-
75
-
-
0033520059
-
Heterogeneity in the actions of drugs that bind in the DNA minor groove
-
Albert F.G., Eckdahl T.T., Fitzgerald D.J., and Anderson J.N. Heterogeneity in the actions of drugs that bind in the DNA minor groove. Biochemistry 38 (1999) 10135-10146
-
(1999)
Biochemistry
, vol.38
, pp. 10135-10146
-
-
Albert, F.G.1
Eckdahl, T.T.2
Fitzgerald, D.J.3
Anderson, J.N.4
-
76
-
-
0035046831
-
Comparison between solution-phase stability and gas-phase kinetic stability of oligodeoxynucleotide duplexes
-
Gabelica V., and De Pauw E. Comparison between solution-phase stability and gas-phase kinetic stability of oligodeoxynucleotide duplexes. J. Mass Spectrom 36 (2001) 397-402
-
(2001)
J. Mass Spectrom
, vol.36
, pp. 397-402
-
-
Gabelica, V.1
De Pauw, E.2
-
77
-
-
0036105742
-
Comparison of the collision-induced dissociation of duplex DNA at different collision regimes: Evidence for a multistep dissociation mechanism
-
Gabelica V., and De Pauw E. Comparison of the collision-induced dissociation of duplex DNA at different collision regimes: Evidence for a multistep dissociation mechanism. J. Am. Soc. Mass Spectrom 13 (2002) 91-98
-
(2002)
J. Am. Soc. Mass Spectrom
, vol.13
, pp. 91-98
-
-
Gabelica, V.1
De Pauw, E.2
-
78
-
-
0025596909
-
Gas-phase proton affinity of deoxyribonucleosides and related nucleobases by fast atom bombardment tandem mass spectrometry
-
Greco F., Liguori A., Sindona G., and Uccella N. Gas-phase proton affinity of deoxyribonucleosides and related nucleobases by fast atom bombardment tandem mass spectrometry. J. Am. Chem. Soc 112 (1990) 9092-9096
-
(1990)
J. Am. Chem. Soc
, vol.112
, pp. 9092-9096
-
-
Greco, F.1
Liguori, A.2
Sindona, G.3
Uccella, N.4
-
79
-
-
0031588542
-
Remarkable morphological variability of a common RNA folding motif: the GNRA tetraloop-receptor interaction
-
Abramovitz D.L., and Pyle A.M. Remarkable morphological variability of a common RNA folding motif: the GNRA tetraloop-receptor interaction. J. Mol. Biol 266 (1997) 493-506
-
(1997)
J. Mol. Biol
, vol.266
, pp. 493-506
-
-
Abramovitz, D.L.1
Pyle, A.M.2
-
80
-
-
0034232357
-
The G·U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems
-
Varani G., and McClain W.H. The G·U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems. EMBO Rep 1 (2000) 18-23
-
(2000)
EMBO Rep
, vol.1
, pp. 18-23
-
-
Varani, G.1
McClain, W.H.2
-
81
-
-
0029016182
-
Classical electrostatics in biology and chemistry
-
Honig B., and Nicholls A. Classical electrostatics in biology and chemistry. Science 268 (1995) 1144-1149
-
(1995)
Science
, vol.268
, pp. 1144-1149
-
-
Honig, B.1
Nicholls, A.2
|