-
1
-
-
0029670279
-
Catalytic role of 2′-hydroxyl groups within a group II intron active site
-
Abramovitz D. L., Friedman R. A., Pyle A. M. Catalytic role of 2′-hydroxyl groups within a group II intron active site. Science. 271:1996;1410-1413.
-
(1996)
Science
, vol.271
, pp. 1410-1413
-
-
Abramovitz, D.L.1
Friedman, R.A.2
Pyle, A.M.3
-
2
-
-
0029082529
-
Structure of the P1 helix from group I self-splicing introns
-
Allain F. H. T., Varani G. Structure of the P1 helix from group I self-splicing introns. J. Mol. Biol. 250:1995;333-353.
-
(1995)
J. Mol. Biol.
, vol.250
, pp. 333-353
-
-
Allain, F.H.T.1
Varani, G.2
-
3
-
-
0025942059
-
A thermodynamic study of unusually stable RNA and DNA hairpins
-
Antao V. P., Lai S. Y., Tinoco I. A thermodynamic study of unusually stable RNA and DNA hairpins. Nucl. Acids Res. 19:1991;5901-5905.
-
(1991)
Nucl. Acids Res.
, vol.19
, pp. 5901-5905
-
-
Antao, V.P.1
Lai, S.Y.2
Tinoco, I.3
-
4
-
-
0029055177
-
Studies of point mutants define three essential paired nucleotides in the domain 5 substructure of a group II intron
-
Boulanger S. C., Belcher S. M., Schmidt U., Dib-Hajj S. D., Schmidt T., Perlman P. S. Studies of point mutants define three essential paired nucleotides in the domain 5 substructure of a group II intron. Mol. Cell. Biol. 15:1995;4479-4488.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 4479-4488
-
-
Boulanger, S.C.1
Belcher, S.M.2
Schmidt, U.3
Dib-Hajj, S.D.4
Schmidt, T.5
Perlman, P.S.6
-
5
-
-
0029820625
-
Crystal structure of a group I ribozyme domain reveals principles of higher order RNA folding
-
Cate J. H., Gooding A. R., Podell E., Zhou K., Golden B. L., Kundrot C. E., Cech T. R., Doudna J. A. Crystal structure of a group I ribozyme domain reveals principles of higher order RNA folding. Science. 273:1996;1678-1685.
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
6
-
-
13344260000
-
Interaction between the phage HK022 Nun protein and the nut RNA of phage λ
-
Chattopadhyay S., Hung S. C., Stuart A. C., Palmer A. G., Garcia-Mena J., Das A., Gottesman M. E. Interaction between the phage HK022 Nun protein and the nut RNA of phage λ Proc. Natl Acad. Sci. USA. 92:1995;12131-12135.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 12131-12135
-
-
Chattopadhyay, S.1
Hung, S.C.2
Stuart, A.C.3
Palmer, A.G.4
Garcia-Mena, J.5
Das, A.6
Gottesman, M.E.7
-
7
-
-
0025071240
-
Solution structure of an unusually stable RNA hairpin, 5′GGAC(UUCG)GUCC
-
Cheong C., Varani G., Tinoco I. Solution structure of an unusually stable RNA hairpin, 5′GGAC(UUCG)GUCC. Nature. 346:1990;680-682.
-
(1990)
Nature
, vol.346
, pp. 680-682
-
-
Cheong, C.1
Varani, G.2
Tinoco, I.3
-
8
-
-
0028921811
-
Frequent use of the same teritiary motif by self-folding RNAs
-
Costa M., Michel F. Frequent use of the same teritiary motif by self-folding RNAs. EMBO J. 14:1995;1276-1285.
-
(1995)
EMBO J.
, vol.14
, pp. 1276-1285
-
-
Costa, M.1
Michel, F.2
-
9
-
-
0029927857
-
Two competing pathways for self-splicing by group II introns; A quantitative analysis of in-vitro reaction rates and products
-
Daniels D., Michels W. J., Pyle A. M. Two competing pathways for self-splicing by group II introns; a quantitative analysis of in-vitro reaction rates and products. J. Mol. Biol. 256:1996;31-49.
-
(1996)
J. Mol. Biol.
, vol.256
, pp. 31-49
-
-
Daniels, D.1
Michels, W.J.2
Pyle, A.M.3
-
10
-
-
0029904020
-
Solution structure of an ATP-binding aptamer reveals a novel fold
-
Dieckmann T., Suzuki E., Nakamura G. K., Feigon J. Solution structure of an ATP-binding aptamer reveals a novel fold. RNA. 2:1996;628-640.
-
(1996)
RNA
, vol.2
, pp. 628-640
-
-
Dieckmann, T.1
Suzuki, E.2
Nakamura, G.K.3
Feigon, J.4
-
11
-
-
0029954443
-
Structural features of a six-nucleotide RNA hairpin loop found in ribosomal RNA
-
Fountain M. A., Serra M. J., Krugh T. R., Turner D. H. Structural features of a six-nucleotide RNA hairpin loop found in ribosomal RNA. Biochemistry. 35:1996;6539-6548.
-
(1996)
Biochemistry
, vol.35
, pp. 6539-6548
-
-
Fountain, M.A.1
Serra, M.J.2
Krugh, T.R.3
Turner, D.H.4
-
12
-
-
0027285186
-
Kinetic analysis of the 5′-splice junction hydrolysis of a Group II intron promoted by Domain 5
-
Franzen J. S., Zhang M., Peebles C. L. Kinetic analysis of the 5′-splice junction hydrolysis of a Group II intron promoted by Domain 5. Nucl. Acids Res. 21:1993;627-634.
-
(1993)
Nucl. Acids Res
, vol.21
, pp. 627-634
-
-
Franzen, J.S.1
Zhang, M.2
Peebles, C.L.3
-
13
-
-
0029161348
-
Termination and antitermination of transcription in temperature bacteriophages
-
Gottesman M. E., Weisberg R. A. Termination and antitermination of transcription in temperature bacteriophages. Sem. Virol. 6:1995;35-42.
-
(1995)
Sem. Virol.
, vol.6
, pp. 35-42
-
-
Gottesman, M.E.1
Weisberg, R.A.2
-
14
-
-
0028261409
-
Lessons from an evolving rRNA: 16 S and 23 S rRNA structures from a comparative perspective
-
Gutell R. R., Larsen N., Woese C. R. Lessons from an evolving rRNA: 16 S and 23 S rRNA structures from a comparative perspective. Microbiol. Rev. 58:1994;10-26.
-
(1994)
Microbiol. Rev.
, vol.58
, pp. 10-26
-
-
Gutell, R.R.1
Larsen, N.2
Woese, C.R.3
-
15
-
-
0026423027
-
Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops
-
Heus H. A., Pardi A. Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops. Science. 253:1991;191-194.
-
(1991)
Science
, vol.253
, pp. 191-194
-
-
Heus, H.A.1
Pardi, A.2
-
16
-
-
0029998660
-
Structure of a hexanucleotide RNA hairpin loop conserved in ribosomal RNAs
-
Huang S., Wang Y.-X., Draper D. E. Structure of a hexanucleotide RNA hairpin loop conserved in ribosomal RNAs. J. Mol. Biol. 258:1996;308-321.
-
(1996)
J. Mol. Biol.
, vol.258
, pp. 308-321
-
-
Huang, S.1
Wang, Y.-X.2
Draper, D.E.3
-
17
-
-
0013893958
-
Physicochemical basis of the recognition process in nucleic acid interactions
-
Huang W. M., Ts'o P. O. P. Physicochemical basis of the recognition process in nucleic acid interactions. J. Mol. Biol. 16:1966;523-543.
-
(1966)
J. Mol. Biol.
, vol.16
, pp. 523-543
-
-
Huang, W.M.1
Ts'O, P.O.P.2
-
18
-
-
0028294458
-
Involvement of a GNRA tetraloop in long-range RNA tertiary interactions
-
Jaeger L., Michel F., Westhof E. Involvement of a GNRA tetraloop in long-range RNA tertiary interactions. J. Mol. Biol. 236:1994;1271-1276.
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 1271-1276
-
-
Jaeger, L.1
Michel, F.2
Westhof, E.3
-
19
-
-
0024022167
-
Group II Intron Domain 5 facilitates a trans-splicing reaction
-
Jarrell K. A., Dietrich R. C., Perlman P. S. Group II Intron Domain 5 facilitates a trans-splicing reaction. Mol. Cell. Biol. 8:1988;2361-2366.
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 2361-2366
-
-
Jarrell, K.A.1
Dietrich, R.C.2
Perlman, P.S.3
-
20
-
-
0029847611
-
RNA folding topology and intermolecular contacts in the AMP-RNA aptamer complex
-
Jiang F., Fiala R., Live D., Kumar R. A., Patel D. J. RNA folding topology and intermolecular contacts in the AMP-RNA aptamer complex. Biochemistry. 35:1996a;13250-13266.
-
(1996)
Biochemistry
, vol.35
, pp. 13250-13266
-
-
Jiang, F.1
Fiala, R.2
Live, D.3
Kumar, R.A.4
Patel, D.J.5
-
21
-
-
0029946537
-
Structural basis of RNA folding and recognition in an AMP-RNA aptamer complex
-
Jiang F., Kumar R. A., Jones R. A., Patel D. J. Structural basis of RNA folding and recognition in an AMP-RNA aptamer complex. Nature. 382:1996b;183-186.
-
(1996)
Nature
, vol.382
, pp. 183-186
-
-
Jiang, F.1
Kumar, R.A.2
Jones, R.A.3
Patel, D.J.4
-
22
-
-
0028866812
-
Solution structure of the CUUG hairpin loop: A novel RNA tetraloop motif
-
Jucker F. M., Pardi A. Solution structure of the CUUG hairpin loop: a novel RNA tetraloop motif. Biochemistry. 34:1995a;14416-14427.
-
(1995)
Biochemistry
, vol.34
, pp. 14416-14427
-
-
Jucker, F.M.1
Pardi, A.2
-
23
-
-
0029283999
-
GNRA tetraloops make a U-turn
-
Jucker F. M., Pardi A. GNRA tetraloops make a U-turn. RNA. 1:1995b;219-222.
-
(1995)
RNA
, vol.1
, pp. 219-222
-
-
Jucker, F.M.1
Pardi, A.2
-
24
-
-
0028310908
-
31P chemical shift as a probe of structural motifs in RNA
-
31P chemical shift as a probe of structural motifs in RNA. J. Magn. Reson. Ser. B, 103:1994;82-86.
-
(1994)
J. Magn. Reson. Ser. B
, vol.103
, pp. 82-86
-
-
Legault, P.1
Pardi, A.2
-
25
-
-
0025678737
-
Modeling of the three-dimensional archtecture of Group I catalytic introns based on comparative sequence analysis
-
Michel F., Westhof E. Modeling of the three-dimensional archtecture of Group I catalytic introns based on comparative sequence analysis. J. Mol. Biol. 216:1990;585-610.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 585-610
-
-
Michel, F.1
Westhof, E.2
-
26
-
-
0028904152
-
Conversion of a group II intron into a new multiple-turnover ribozyme that selectively cleaves oligonucleotides: Elucidation of reaction mechanism and structure/function relationships
-
Michels W. J., Pyle A. M. Conversion of a group II intron into a new multiple-turnover ribozyme that selectively cleaves oligonucleotides: elucidation of reaction mechanism and structure/function relationships. Biochemistry. 34:1995;2965-2977.
-
(1995)
Biochemistry
, vol.34
, pp. 2965-2977
-
-
Michels, W.J.1
Pyle, A.M.2
-
27
-
-
0024819449
-
Synthesis of small RNAs using T7 RNA polymerase
-
Milligan J. F., Uhlenbeck O. C. Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol. 180:1989;51-62.
-
(1989)
Methods Enzymol
, vol.180
, pp. 51-62
-
-
Milligan, J.F.1
Uhlenbeck, O.C.2
-
28
-
-
0028365816
-
A tyrosyl-tRNA synthetase can function similarly to an RNA structure in the Tetrahymena ribozyme
-
Mohr G., Caprara M. G., Guo Q., Lambowitz A. M. A tyrosyl-tRNA synthetase can function similarly to an RNA structure in the Tetrahymena ribozyme. Science. 370:1994;147-150.
-
(1994)
Science
, vol.370
, pp. 147-150
-
-
Mohr, G.1
Caprara, M.G.2
Guo, Q.3
Lambowitz, A.M.4
-
29
-
-
0029129682
-
Use of ultra stable UNCG tetraloop hairpins to fold RNA structures: Thermodynamic and spectroscopic applications
-
Molinaro M., Tinoco I. Use of ultra stable UNCG tetraloop hairpins to fold RNA structures: thermodynamic and spectroscopic applications. Nucl. Acids Res. 23:1995;3056-3063.
-
(1995)
Nucl. Acids Res.
, vol.23
, pp. 3056-3063
-
-
Molinaro, M.1
Tinoco, I.2
-
30
-
-
0026680843
-
Site-specific modification of pre-mRNA: The 2′-hydroxyl groups at the splice sites
-
Moore M. J., Sharp P. A. Site-specific modification of pre-mRNA: the 2′-hydroxyl groups at the splice sites. Science. 256:1992;992-997.
-
(1992)
Science
, vol.256
, pp. 992-997
-
-
Moore, M.J.1
Sharp, P.A.2
-
31
-
-
0028301674
-
GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain
-
Murphy F. L., Cech T. R. GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain. J. Mol. Biol. 236:1994;49-63.
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 49-63
-
-
Murphy, F.L.1
Cech, T.R.2
-
32
-
-
0027161934
-
Compilation of small ribosomal RNA structures
-
Neefs J. M., Van de Peer Y., De Rijk P., Chapelle S., De Wachter R. Compilation of small ribosomal RNA structures. Nucl. Acids Res. 21:1993;3025-3049.
-
(1993)
Nucl. Acids Res
, vol.21
, pp. 3025-3049
-
-
Neefs, J.M.1
Van De Peer, Y.2
De Rijk, P.3
Chapelle, S.4
De Wachter, R.5
-
33
-
-
0028990228
-
Identification of a catalytically critical trinucleotide in Domain 5 of a group II intron
-
Peebles C. L., Zhang M., Perlman P. S., Franzen J. F. Identification of a catalytically critical trinucleotide in Domain 5 of a group II intron. Proc. Natl Acad. Sci. USA. 92:1995;4422-4426.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 4422-4426
-
-
Peebles, C.L.1
Zhang, M.2
Perlman, P.S.3
Franzen, J.F.4
-
34
-
-
0028037302
-
Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix
-
Pley H. M., Flaherty K. M., McKay D. B. Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix. Nature. 372:1994a;111-113.
-
(1994)
Nature
, vol.372
, pp. 111-113
-
-
Pley, H.M.1
Flaherty, K.M.2
McKay, D.B.3
-
35
-
-
0028063567
-
Three-dimensional structure of a hammerhead ribozyme
-
Pley H. W., Flaherty K. M., McKay D. B. Three-dimensional structure of a hammerhead ribozyme. Nature. 372:1994b;68-74.
-
(1994)
Nature
, vol.372
, pp. 68-74
-
-
Pley, H.W.1
Flaherty, K.M.2
McKay, D.B.3
-
36
-
-
0029061712
-
Stereochemical selectivity of group II intron splicing, reverse-splicing and hydrolysis reactions
-
Podar M., Perlman P. S., Padgett R. A. Stereochemical selectivity of group II intron splicing, reverse-splicing and hydrolysis reactions. Mol. Cell. Biol. 15:1995;4466-4478.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 4466-4478
-
-
Podar, M.1
Perlman, P.S.2
Padgett, R.A.3
-
37
-
-
0002319075
-
Catalytic Reaction Mechanisms and Structural Features of Group II Intron Ribozymes
-
Pyle A. M. Catalytic Reaction Mechanisms and Structural Features of Group II Intron Ribozymes. Nucl. Acids Mol. Biol. 10:1996;75-107.
-
(1996)
Nucl. Acids Mol. Biol.
, vol.10
, pp. 75-107
-
-
Pyle, A.M.1
-
38
-
-
0028351893
-
Building a kinetic framework for group II intron ribozyme activity: Quantitation of interdomain binding and reaction rate
-
Pyle A. M., Green J. B. Building a kinetic framework for group II intron ribozyme activity: quantitation of interdomain binding and reaction rate. Biochemistry. 33:1994;2716-2725.
-
(1994)
Biochemistry
, vol.33
, pp. 2716-2725
-
-
Pyle, A.M.1
Green, J.B.2
-
40
-
-
0026729278
-
Ribozyme substrate binding site in the catalytic core of the Tetrahymena ribozyme
-
Pyle A. M., Murphy F. L., Cech T. R. Ribozyme substrate binding site in the catalytic core of the Tetrahymena ribozyme. Nature. 358:1992;123-128.
-
(1992)
Nature
, vol.358
, pp. 123-128
-
-
Pyle, A.M.1
Murphy, F.L.2
Cech, T.R.3
-
41
-
-
0017182937
-
Structural domains of transfer RNA molecules
-
Quigley G. J., Rich A. Structural domains of transfer RNA molecules. Science. 194:1976;796-806.
-
(1976)
Science
, vol.194
, pp. 796-806
-
-
Quigley, G.J.1
Rich, A.2
-
42
-
-
0026562625
-
Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin
-
SantaLucia J., Kierzek R., Turner D. H. Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin. Science. 256:1992;217-219.
-
(1992)
Science
, vol.256
, pp. 217-219
-
-
Santalucia, J.1
Kierzek, R.2
Turner, D.H.3
-
43
-
-
0025048746
-
Chemical synthesis of biologically active oligoribonucleotides using β-cyanoethyl protected ribonucleoside phosphoramidites
-
Scaringe S. A., Francklyn C., Usman N. Chemical synthesis of biologically active oligoribonucleotides using β-cyanoethyl protected ribonucleoside phosphoramidites. Nucl. Acids Res. 18:1990;5433-5441.
-
(1990)
Nucl. Acids Res.
, vol.18
, pp. 5433-5441
-
-
Scaringe, S.A.1
Francklyn, C.2
Usman, N.3
-
44
-
-
0023973247
-
CUUCGG hairpins: Extraordinarily stable RNA secondary structures associated with various biochemical processes
-
Tuerk C., Gauss P., Thermes C., Groebe D. R., Gayle M., Guild N., Stormo G., d'Aubenton-Carafa Y., Uhlenbeck O. C., Tinoco I. CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes. Proc. Natl Acad. Sci. USA. 85:1988;1364-1368.
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 1364-1368
-
-
Tuerk, C.1
Gauss, P.2
Thermes, C.3
Groebe, D.R.4
Gayle, M.5
Guild, N.6
Stormo, G.7
D'Aubenton-Carafa, Y.8
Uhlenbeck, O.C.9
Tinoco, I.10
-
45
-
-
0029258928
-
Keeping RNA happy
-
Uhlenbeck O. C. Keeping RNA happy. RNA. 1:1995;4-6.
-
(1995)
RNA
, vol.1
, pp. 4-6
-
-
Uhlenbeck, O.C.1
-
46
-
-
0029121733
-
Exceptionally stable nucleic acid hairpins
-
Varani G. Exceptionally stable nucleic acid hairpins. Annu. Rev. Biophys. Biomol. Struct. 24:1995;379-404.
-
(1995)
Annu. Rev. Biophys. Biomol. Struct.
, vol.24
, pp. 379-404
-
-
Varani, G.1
-
47
-
-
0028000994
-
Coaxial stacking of helices enhances binding of oligoribonucleotides and improves predictions of RNA folding
-
Walter A. E., Turner D. H., Kim J., Lyttle M. H., Müller P., Mathews D. H., Zuker M. Coaxial stacking of helices enhances binding of oligoribonucleotides and improves predictions of RNA folding. Proc. Natl Acad. Sci. USA. 91:1994;9218-9222.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 9218-9222
-
-
Walter, A.E.1
Turner, D.H.2
Kim, J.3
Lyttle, M.H.4
Müller, P.5
Mathews, D.H.6
Zuker, M.7
-
48
-
-
0026095866
-
A rapid method for purification of synthetic oligoribonucleotides
-
Webster K. R., Shamoo Y., Konigsberg W., Spicer E. K. A rapid method for purification of synthetic oligoribonucleotides. BioTechniques. 11:1991;658-661.
-
(1991)
BioTechniques
, vol.11
, pp. 658-661
-
-
Webster, K.R.1
Shamoo, Y.2
Konigsberg, W.3
Spicer, E.K.4
-
49
-
-
0029151591
-
Synthesis, deprotection, analysis and purification of RNA and ribozymes
-
Wincott F., DiRenzo A., Schaffer C., Grimm S., Tracz D., Workman C., Sweedler D., Gonzalez C., Scaringe S., Usman N. Synthesis, deprotection, analysis and purification of RNA and ribozymes. Nucl. Acids Res. 23:1995;2677-2684.
-
(1995)
Nucl. Acids Res.
, vol.23
, pp. 2677-2684
-
-
Wincott, F.1
Direnzo, A.2
Schaffer, C.3
Grimm, S.4
Tracz, D.5
Workman, C.6
Sweedler, D.7
Gonzalez, C.8
Scaringe, S.9
Usman, N.10
-
50
-
-
0025047647
-
Architecture of ribosomal RNA: Constraints on the sequence of "tetra-loops"
-
Woese C. R., Winker S., Gutell R. R. Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops" Proc. Natl Acad. Sci. USA. 87:1990;8467-8467.
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 8467-8467
-
-
Woese, C.R.1
Winker, S.2
Gutell, R.R.3
|