메뉴 건너뛰기




Volumn 274, Issue 5291, 1996, Pages 1367-1371

Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic

Author keywords

[No Author keywords available]

Indexed keywords

AMINOGLYCOSIDE ANTIBIOTIC AGENT; PAROMOMYCIN; RNA 16S;

EID: 0029825658     PISSN: 00368075     EISSN: None     Source Type: Journal    
DOI: 10.1126/science.274.5291.1367     Document Type: Article
Times cited : (754)

References (46)
  • 1
    • 0025070318 scopus 로고
    • D. Moazed and H. F. Noller, J. Mol. Bol. 211, 135 (1990); H. F. Noller. Annu. Rev. Biochern 60, 191 (1991); R. A. Zimmermann, C. L. Thomas, J. Wower. in The Ribosome Structure, Function and Evolution, W. E Hill et al., Eds. (American Society for Microbiology, Washington, DC. 1990). pp. 331-347.
    • (1990) J. Mol. Bol. , vol.211 , pp. 135
    • Moazed, D.1    Noller, H.F.2
  • 2
    • 0025733603 scopus 로고
    • D. Moazed and H. F. Noller, J. Mol. Bol. 211, 135 (1990); H. F. Noller. Annu. Rev. Biochern 60, 191 (1991); R. A. Zimmermann, C. L. Thomas, J. Wower. in The Ribosome Structure, Function and Evolution, W. E Hill et al., Eds. (American Society for Microbiology, Washington, DC. 1990). pp. 331-347.
    • (1991) Annu. Rev. Biochern , vol.60 , pp. 191
    • Noller, H.F.1
  • 3
    • 0025070318 scopus 로고
    • W. E Hill et al., Eds. American Society for Microbiology, Washington, DC.
    • D. Moazed and H. F. Noller, J. Mol. Bol. 211, 135 (1990); H. F. Noller. Annu. Rev. Biochern 60, 191 (1991); R. A. Zimmermann, C. L. Thomas, J. Wower. in The Ribosome Structure, Function and Evolution, W. E Hill et al., Eds. (American Society for Microbiology, Washington, DC. 1990). pp. 331-347.
    • (1990) The Ribosome Structure, Function and Evolution , pp. 331-347
    • Zimmermann, R.A.1    Thomas, C.L.2    Wower, J.3
  • 4
    • 0023238983 scopus 로고
    • D. Moazed and H. F. Noller, Nature 327, 389 (1987); J. Woodcock, D. Moazed, M. Cannon, J. Davies, H. F. Noller, EMBO J. 10, 3099 (1991).
    • (1987) Nature , vol.327 , pp. 389
    • Moazed, D.1    Noller, H.F.2
  • 6
    • 0014429801 scopus 로고
    • J. Davies and B. D. Davis, J. Biol. Chem. 243, 3312 (1968); P. Edelmann and J. Gallant. Cell 10, 131 (1977): E. F. Gale, E. Cundliffe, P. E. Reynolds, M. H. Richmond, M. J. Waring, The Molecular Basis of Antibiotic Action (Wiley, London, 1981).
    • (1968) J. Biol. Chem. , vol.243 , pp. 3312
    • Davies, J.1    Davis, B.D.2
  • 7
    • 0017610661 scopus 로고
    • J. Davies and B. D. Davis, J. Biol. Chem. 243, 3312 (1968); P. Edelmann and J. Gallant. Cell 10, 131 (1977): E. F. Gale, E. Cundliffe, P. E. Reynolds, M. H. Richmond, M. J. Waring, The Molecular Basis of Antibiotic Action (Wiley, London, 1981).
    • (1977) Cell , vol.10 , pp. 131
    • Edelmann, P.1    Gallant, J.2
  • 14
    • 10544227680 scopus 로고    scopus 로고
    • unpublished results. A 43-nt RNA had a similar structure in the A site as determined by NMR
    • D. Fourmy and J. D. Puglisi, unpublished results. A 43-nt RNA had a similar structure in the A site as determined by NMR.
    • Fourmy, D.1    Puglisi, J.D.2
  • 16
    • 0028820398 scopus 로고
    • 13C-filtered NOESY and TOCSY [G. Otting and K. Wüthrich, Q. Rev. Biophys. 23, 39 (1990); W. Lee et al., FEBS Lett. 350, 87 (1994)]. Sequential connectivities between nucleotides in RNA were obtained by HP-COSY and HCP. Adenine H2 protons were assigned by correlation to H8 resonances by 2D HCCH-TOCSY [J. P. Marino et al., J. Am. Chem. Soc. 116, 2205 (1994)]. The hydrogen bonding patterns of the base pairs were determined from analysis of SSNOESY spectra in water at different mixing times (75, 150, and 300 ms) [S. H. Smallcombe, J. Am. Chem Soc. 115, 4776 (1993)]. For the U-U base pair a strong NOE was observed between the two imino protons.
    • (1995) Methods Enzymol. , vol.261 , pp. 323
    • Puglisi, J.D.1    Wyatt, J.R.2
  • 17
    • 44049118414 scopus 로고
    • 13C-filtered NOESY and TOCSY [G. Otting and K. Wüthrich, Q. Rev. Biophys. 23, 39 (1990); W. Lee et al., FEBS Lett. 350, 87 (1994)]. Sequential connectivities between nucleotides in RNA were obtained by HP-COSY and HCP. Adenine H2 protons were assigned by correlation to H8 resonances by 2D HCCH-TOCSY [J. P. Marino et al., J. Am. Chem. Soc. 116, 2205 (1994)]. The hydrogen bonding patterns of the base pairs were determined from analysis of SSNOESY spectra in water at different mixing times (75, 150, and 300 ms) [S. H. Smallcombe, J. Am. Chem Soc. 115, 4776 (1993)]. For the U-U base pair a strong NOE was observed between the two imino protons.
    • (1992) J. Magn. Res. , vol.97 , pp. 202
    • Santoro, J.1    King, G.2
  • 18
    • 0025109109 scopus 로고
    • 13C-filtered NOESY and TOCSY [G. Otting and K. Wüthrich, Q. Rev. Biophys. 23, 39 (1990); W. Lee et al., FEBS Lett. 350, 87 (1994)]. Sequential connectivities between nucleotides in RNA were obtained by HP-COSY and HCP. Adenine H2 protons were assigned by correlation to H8 resonances by 2D HCCH-TOCSY [J. P. Marino et al., J. Am. Chem. Soc. 116, 2205 (1994)]. The hydrogen bonding patterns of the base pairs were determined from analysis of SSNOESY spectra in water at different mixing times (75, 150, and 300 ms) [S. H. Smallcombe, J. Am. Chem Soc. 115, 4776 (1993)]. For the U-U base pair a strong NOE was observed between the two imino protons.
    • (1990) Biochemistry , vol.29 , pp. 8172
    • Clore, G.M.1
  • 19
    • 0025252231 scopus 로고
    • 13C-filtered NOESY and TOCSY [G. Otting and K. Wüthrich, Q. Rev. Biophys. 23, 39 (1990); W. Lee et al., FEBS Lett. 350, 87 (1994)]. Sequential connectivities between nucleotides in RNA were obtained by HP-COSY and HCP. Adenine H2 protons were assigned by correlation to H8 resonances by 2D HCCH-TOCSY [J. P. Marino et al., J. Am. Chem. Soc. 116, 2205 (1994)]. The hydrogen bonding patterns of the base pairs were determined from analysis of SSNOESY spectra in water at different mixing times (75, 150, and 300 ms) [S. H. Smallcombe, J. Am. Chem Soc. 115, 4776 (1993)]. For the U-U base pair a strong NOE was observed between the two imino protons.
    • (1990) Q. Rev. Biophys. , vol.23 , pp. 39
    • Otting, G.1    Wüthrich, K.2
  • 20
    • 0028022578 scopus 로고
    • 13C-filtered NOESY and TOCSY [G. Otting and K. Wüthrich, Q. Rev. Biophys. 23, 39 (1990); W. Lee et al., FEBS Lett. 350, 87 (1994)]. Sequential connectivities between nucleotides in RNA were obtained by HP-COSY and HCP. Adenine H2 protons were assigned by correlation to H8 resonances by 2D HCCH-TOCSY [J. P. Marino et al., J. Am. Chem. Soc. 116, 2205 (1994)]. The hydrogen bonding patterns of the base pairs were determined from analysis of SSNOESY spectra in water at different mixing times (75, 150, and 300 ms) [S. H. Smallcombe, J. Am. Chem Soc. 115, 4776 (1993)]. For the U-U base pair a strong NOE was observed between the two imino protons.
    • (1994) FEBS Lett. , vol.350 , pp. 87
    • Lee, W.1
  • 21
    • 0028121697 scopus 로고
    • 13C-filtered NOESY and TOCSY [G. Otting and K. Wüthrich, Q. Rev. Biophys. 23, 39 (1990); W. Lee et al., FEBS Lett. 350, 87 (1994)]. Sequential connectivities between nucleotides in RNA were obtained by HP-COSY and HCP. Adenine H2 protons were assigned by correlation to H8 resonances by 2D HCCH-TOCSY [J. P. Marino et al., J. Am. Chem. Soc. 116, 2205 (1994)]. The hydrogen bonding patterns of the base pairs were determined from analysis of SSNOESY spectra in water at different mixing times (75, 150, and 300 ms) [S. H. Smallcombe, J. Am. Chem Soc. 115, 4776 (1993)]. For the U-U base pair a strong NOE was observed between the two imino protons.
    • (1994) J. Am. Chem. Soc. , vol.116 , pp. 2205
    • Marino, J.P.1
  • 22
    • 12044251259 scopus 로고
    • 13C-filtered NOESY and TOCSY [G. Otting and K. Wüthrich, Q. Rev. Biophys. 23, 39 (1990); W. Lee et al., FEBS Lett. 350, 87 (1994)]. Sequential connectivities between nucleotides in RNA were obtained by HP-COSY and HCP. Adenine H2 protons were assigned by correlation to H8 resonances by 2D HCCH-TOCSY [J. P. Marino et al., J. Am. Chem. Soc. 116, 2205 (1994)]. The hydrogen bonding patterns of the base pairs were determined from analysis of SSNOESY spectra in water at different mixing times (75, 150, and 300 ms) [S. H. Smallcombe, J. Am. Chem Soc. 115, 4776 (1993)]. For the U-U base pair a strong NOE was observed between the two imino protons.
    • (1993) J. Am. Chem Soc. , vol.115 , pp. 4776
    • Smallcombe, S.H.1
  • 23
    • 10544219953 scopus 로고    scopus 로고
    • note
    • Distance restraints for nonexchangeable RNA protons were derived from visual inspection of NOESY cross-peak intensities at 50, 100, 150, 200, and 250 ms NOESY. NOEs were classified into three distance bound ranges: strong 1.8 to 2.5 E̊, medium 2.5 to 3.5 Å. and weak 3.5 to 5 Å (or 3.5 to 5.5 Å for some NOEs with exchangeable protons of the RNA, obtained from 75- and 150-ms SSNOESY experiments, or 3.5 to 6 Å for some intermolecutar NOEs involving dynamic rings of the paromomycin). Appropriate pseudoatom distance corrections were used.
  • 24
    • 10544231390 scopus 로고    scopus 로고
    • note
    • 1495(H3)-ring II(6).
  • 25
    • 0029082529 scopus 로고
    • H1′-H2′ was >8 Hz or <3 Hz, respectively. No restraints were used for riboses with mixed sugar conformations. Several paromomycin ring I and II dihedral angles were restrained from analysis of the short mixing time TOCSY and DQF-COSY spectrum.
    • (1995) J. Mol. Biol. , vol.250 , pp. 333
    • Allain, F.H.-T.1    Varani, G.2
  • 26
    • 0028008137 scopus 로고
    • H1′-H2′ was >8 Hz or <3 Hz, respectively. No restraints were used for riboses with mixed sugar conformations. Several paromomycin ring I and II dihedral angles were restrained from analysis of the short mixing time TOCSY and DQF-COSY spectrum.
    • (1994) J. Am. Chem. Soc. , vol.116 , pp. 6472
    • Marino, J.P.1
  • 27
    • 10544236051 scopus 로고    scopus 로고
    • note
    • 1. All color figures were generated with the program Insightll (Biosym Technologies. San Diego, CA).
  • 37
    • 0025305692 scopus 로고
    • E. A. DeStasio, D. Moazed, H. Noller, A. E. Dahlberg, EMBO J. 8, 1213 (1989): E. A. DeStasio and A. E. Dahlberg, J. Mol. Biol. 212, 127 (1990).
    • (1990) J. Mol. Biol. , vol.212 , pp. 127
    • DeStasio, E.A.1    Dahlberg, A.E.2
  • 41
    • 0016793283 scopus 로고
    • J. J. Hopfield, ibid. 71, 4135 (1974); J. Ninio, Biochimie 57, 587 (1975).
    • (1975) Biochimie , vol.57 , pp. 587
    • Ninio, J.1
  • 43
    • 0026427239 scopus 로고
    • A. M. Pyle and T. R. Cech. Nature 350, 628 (1991); A. M. Pyle, F. L Murphy. T. R. Cech, ibid. 358, 123 (1992).
    • (1991) Nature , vol.350 , pp. 628
    • Pyle, A.M.1    Cech, T.R.2
  • 46
    • 10544232542 scopus 로고    scopus 로고
    • note
    • We thank H. Noller for encouragement and discussions, A. Pardi for assistance with NMR techniques, E. V. Puglisi for comments and support, and M. Ares and R. Green for reading the manuscript. Supported by grants from the Packard Foundation, the Deafness Research Foundation, National Institute of Health (GM51266-01A1), Lucille P, Markey Charitable Trust (J.D.P.), and a postdoctoral grant from Institut National de la Santé et de la Recherche Médicale (D.F.), The coordinates have been deposited in the Brookhaven Protein Data Bank with access number T9496.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.