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Volumn 49, Issue 19, 2006, Pages 5759-5768

Structural insights into the ATP binding pocket of the anaplastic lymphoma kinase by site-directed mutagenesis, inhibitor binding analysis, and homology modeling

Author keywords

[No Author keywords available]

Indexed keywords

4 ANILINO 3 QUINOLINECARBONITRILE; 4 PHENYLAMINOQUINOLINE DERIVATIVE; 6 (2,6 DICHLOROPHENYL) 8 METHYL 2 (3 METHYLTHIOANILINO) 8H PYRIDO[2,3 D]PYRIMIDIN 7 ONE; ANAPLASTIC LYMPHOMA KINASE; ANAPLASTIC LYMPHOMA KINASE INHIBITOR; BOSUTINIB; DOCKING PROTEIN; HYBRID PROTEIN; IMATINIB; PHOSPHOTRANSFERASE INHIBITOR; PYRIDO[2,3 D]PYRIMIDINE INHIBITOR; QUINOLONE DERIVATIVE; UNCLASSIFIED DRUG;

EID: 33748861075     PISSN: 00222623     EISSN: None     Source Type: Journal    
DOI: 10.1021/jm060380k     Document Type: Article
Times cited : (33)

References (46)
  • 1
    • 0031008896 scopus 로고    scopus 로고
    • ALK, the chromosome 2 gene locus altered by the t(2;5) in non-Hodgkin's lymphoma, encodes a novel neural receptor tyrosine kinase that is highly related to leukocyte tyrosine kinase (LTK)
    • Morris, S. W.; Naeve, C.; Mathew, P.; James, P. L.; Kirstein, M. N.; Cui, X.; Witte, D. P. ALK, the chromosome 2 gene locus altered by the t(2;5) in non-Hodgkin's lymphoma, encodes a novel neural receptor tyrosine kinase that is highly related to leukocyte tyrosine kinase (LTK). Oncogene 1997, 14, 2175-2188.
    • (1997) Oncogene , vol.14 , pp. 2175-2188
    • Morris, S.W.1    Naeve, C.2    Mathew, P.3    James, P.L.4    Kirstein, M.N.5    Cui, X.6    Witte, D.P.7
  • 2
    • 0031035052 scopus 로고    scopus 로고
    • Molecular characterization of ALK, a receptor tyrosine kinase expressed specifically in the nervous system
    • Iwahara, T.; Fujimoto, J.; Wen, D.; Cupples, R.; Bucay, N.; Arakawa, T.; Mori, S.; Ratzkin, B.; Yamamoto, T. Molecular characterization of ALK, a receptor tyrosine kinase expressed specifically in the nervous system. Oncogene 1997, 14, 439-449.
    • (1997) Oncogene , vol.14 , pp. 439-449
    • Iwahara, T.1    Fujimoto, J.2    Wen, D.3    Cupples, R.4    Bucay, N.5    Arakawa, T.6    Mori, S.7    Ratzkin, B.8    Yamamoto, T.9
  • 4
    • 0034761584 scopus 로고    scopus 로고
    • Anaplastic lymphoma kinase (ALK) expression in the inflammatory myofibroblastic tumor: A comparative immunohistochemical study
    • Cook, J. R.; Dehner, L. P.; Collins, M. H.; Ma, Z.; Morris, S. W.; Coffin, C. M.; Hill, D. A. Anaplastic lymphoma kinase (ALK) expression in the inflammatory myofibroblastic tumor: a comparative immunohistochemical study. Am. J. Surg. Pathol. 2001, 25, 1364-1371.
    • (2001) Am. J. Surg. Pathol. , vol.25 , pp. 1364-1371
    • Cook, J.R.1    Dehner, L.P.2    Collins, M.H.3    Ma, Z.4    Morris, S.W.5    Coffin, C.M.6    Hill, D.A.7
  • 6
    • 0031755958 scopus 로고    scopus 로고
    • Nucleophosmin-anaplastic lymphoma kinase of large-cell anaplastic lymphoma is a constitutively active tyrosine kinase that utilizes phospholipase C-gamma to mediate its mitogenicity
    • Bai, R. Y.; Dieter, P.; Peschel, C.; Morris, S. W.; Duyster, J. Nucleophosmin-anaplastic lymphoma kinase of large-cell anaplastic lymphoma is a constitutively active tyrosine kinase that utilizes phospholipase C-gamma to mediate its mitogenicity. Mol. Cell. Biol. 1998, 18, 6951-6961.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 6951-6961
    • Bai, R.Y.1    Dieter, P.2    Peschel, C.3    Morris, S.W.4    Duyster, J.5
  • 8
    • 85047699293 scopus 로고    scopus 로고
    • Anaplastic lymphoma kinase (ALK) activates Stat3 and protects hematopoietic cells from cell death
    • Zamo, A.; Chiarle, R.; Piva, R.; Howes, J.; Fan, Y.; Chilosi, M.; Levy, D. E.; Inghirami, G. Anaplastic lymphoma kinase (ALK) activates Stat3 and protects hematopoietic cells from cell death. Oncogene 2002, 21, 1038-1047.
    • (2002) Oncogene , vol.21 , pp. 1038-1047
    • Zamo, A.1    Chiarle, R.2    Piva, R.3    Howes, J.4    Fan, Y.5    Chilosi, M.6    Levy, D.E.7    Inghirami, G.8
  • 9
    • 0030934862 scopus 로고    scopus 로고
    • Role of the nucleophosmin (NPM) portion of the non-Hodgkin's lymphoma-associated NPM-anaplastic lymphoma kinase fusion protein in oncogenesis
    • Bischof, D.; Pulford, K.; Mason, D. Y.; Morris, S. W. Role of the nucleophosmin (NPM) portion of the non-Hodgkin's lymphoma-associated NPM-anaplastic lymphoma kinase fusion protein in oncogenesis. Mol. Cell. Biol. 1997, 17, 2312-2325.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 2312-2325
    • Bischof, D.1    Pulford, K.2    Mason, D.Y.3    Morris, S.W.4
  • 12
    • 15944404601 scopus 로고    scopus 로고
    • The development of imatinib as a therapeutic agent for chronic myeloid leukemia
    • Deininger, M.; Buchdunger, E.; Druker, B. J. The development of imatinib as a therapeutic agent for chronic myeloid leukemia. Blood 2005, 105, 2640-2653.
    • (2005) Blood , vol.105 , pp. 2640-2653
    • Deininger, M.1    Buchdunger, E.2    Druker, B.J.3
  • 13
    • 20044362947 scopus 로고    scopus 로고
    • State-of-the art therapy for gastrointestinal stromal tumors
    • Blanke, C. D.; Corless, C. L. State-of-the art therapy for gastrointestinal stromal tumors. Cancer Invest. 2005, 23, 274-280.
    • (2005) Cancer Invest. , vol.23 , pp. 274-280
    • Blanke, C.D.1    Corless, C.L.2
  • 14
    • 12144261476 scopus 로고    scopus 로고
    • Oncogenic derivatives of platelet-derived growth factor receptors
    • Jones, A. V.; Cross, N. C. Oncogenic derivatives of platelet-derived growth factor receptors. Cell. Mol. Life Sci. 2004, 61, 2912-2923.
    • (2004) Cell. Mol. Life Sci. , vol.61 , pp. 2912-2923
    • Jones, A.V.1    Cross, N.C.2
  • 16
    • 0036682301 scopus 로고    scopus 로고
    • Crystal structures of the kinase domain of c-Abl in complex with the small molecule inhibitors PD173955 and imatinib (STI-571)
    • Nagar, B.; Bornmann, W. G.; Pellicena, P.; Schindler, T.; Veach, D. R.; Miller, W. T.; Clarkson, B.; Kuriyan, J. Crystal structures of the kinase domain of c-Abl in complex with the small molecule inhibitors PD173955 and imatinib (STI-571). Cancer Res. 2002, 62, 4236-4243.
    • (2002) Cancer Res. , vol.62 , pp. 4236-4243
    • Nagar, B.1    Bornmann, W.G.2    Pellicena, P.3    Schindler, T.4    Veach, D.R.5    Miller, W.T.6    Clarkson, B.7    Kuriyan, J.8
  • 18
    • 0032102902 scopus 로고    scopus 로고
    • Conversion of SB 203580-insensitive MAP kinase family members to drug-sensitive forms by a single amino acid substitution
    • Eyers, P. A.; Craxton, M.; Morrice, N.; Cohen, P.; Goedert, M. Conversion of SB 203580-insensitive MAP kinase family members to drug-sensitive forms by a single amino acid substitution. Chem. Biol. 1998, 5, 321-328.
    • (1998) Chem. Biol. , vol.5 , pp. 321-328
    • Eyers, P.A.1    Craxton, M.2    Morrice, N.3    Cohen, P.4    Goedert, M.5
  • 19
    • 0037674323 scopus 로고    scopus 로고
    • Mutation of threonine 766 in the epidermal growth factor receptor reveals a hotspot for resistance formation against selective tyrosine kinase inhibitors
    • Blencke, S.; Ullrich, A.; Daub, H. Mutation of threonine 766 in the epidermal growth factor receptor reveals a hotspot for resistance formation against selective tyrosine kinase inhibitors. J. Biol. Chem. 2003, 278, 15435-15440.
    • (2003) J. Biol. Chem. , vol.278 , pp. 15435-15440
    • Blencke, S.1    Ullrich, A.2    Daub, H.3
  • 20
    • 2642558897 scopus 로고    scopus 로고
    • Characterization of a conserved structural determinant controlling protein kinase sensitivity to selective inhibitors
    • Blencke, S.; Zech, B.; Engkvist, O.; Greff, Z.; Orfi, L.; Horvath, Z.; Keri, G.; Ullrich, A.; Daub, H. Characterization of a conserved structural determinant controlling protein kinase sensitivity to selective inhibitors. Chem. Biol. 2004, 11, 691-701.
    • (2004) Chem. Biol. , vol.11 , pp. 691-701
    • Blencke, S.1    Zech, B.2    Engkvist, O.3    Greff, Z.4    Orfi, L.5    Horvath, Z.6    Keri, G.7    Ullrich, A.8    Daub, H.9
  • 21
    • 3042716081 scopus 로고    scopus 로고
    • A single amino acid exchange inverts susceptibility of related receptor tyrosine kinases for the ATP site inhibitor STI-571
    • Bohmer, F. D.; Karagyozov, L.; Uecker, A.; Serve, H.; Botzki, A.; Mahboobi, S.; Dove, S. A single amino acid exchange inverts susceptibility of related receptor tyrosine kinases for the ATP site inhibitor STI-571. J. Biol. Chem. 2003, 278, 5148-5155.
    • (2003) J. Biol. Chem. , vol.278 , pp. 5148-5155
    • Bohmer, F.D.1    Karagyozov, L.2    Uecker, A.3    Serve, H.4    Botzki, A.5    Mahboobi, S.6    Dove, S.7
  • 22
    • 0035800507 scopus 로고    scopus 로고
    • Clinical resistance to STI-571 cancer therapy caused by BCR-ABL gene mutation or amplification
    • Gorre, M. E.; Mohammed, M.; Ellwood, K.; Hsu, N.; Paquette, R.; Rao, P. N.; Sawyers, C. L. Clinical resistance to STI-571 cancer therapy caused by BCR-ABL gene mutation or amplification. Science 2001, 293, 876-880.
    • (2001) Science , vol.293 , pp. 876-880
    • Gorre, M.E.1    Mohammed, M.2    Ellwood, K.3    Hsu, N.4    Paquette, R.5    Rao, P.N.6    Sawyers, C.L.7
  • 23
    • 0035576134 scopus 로고    scopus 로고
    • Three-dimensional model of the cyclin-dependent kinase 1 (CDK1): Ab initio active site parameters for molecular dynamics studies of CDKS
    • Cavalli, A.; Dezi, C.; Folkers, G.; Scapozza, L.; Recanatini, M. Three-dimensional model of the cyclin-dependent kinase 1 (CDK1): Ab initio active site parameters for molecular dynamics studies of CDKS. Proteins 2001, 45, 478-485.
    • (2001) Proteins , vol.45 , pp. 478-485
    • Cavalli, A.1    Dezi, C.2    Folkers, G.3    Scapozza, L.4    Recanatini, M.5
  • 24
    • 20544455834 scopus 로고    scopus 로고
    • 3D-QSAR studies on c-Src kinase inhibitors and docking analyses of a potent dual kinase inhibitor of c-Src and c-Abl kinases
    • Thaimattam, R.; Daga, P. R.; Banerjee, R.; Iqbal, J. 3D-QSAR studies on c-Src kinase inhibitors and docking analyses of a potent dual kinase inhibitor of c-Src and c-Abl kinases. Bioorg. Med. Chem. 2005, 13, 4704-4712.
    • (2005) Bioorg. Med. Chem. , vol.13 , pp. 4704-4712
    • Thaimattam, R.1    Daga, P.R.2    Banerjee, R.3    Iqbal, J.4
  • 26
    • 0037439689 scopus 로고    scopus 로고
    • SKI-606, a 4-anilino-3-quinolinecarbonitrile dual inhibitor of Src and Abl kinases, is a potent antiproliferative agent against chronic myelogenous leukemia cells in culture and causes regression of K562 xenografts in nude mice
    • Golas, J. M.; Arndt, K.; Etienne, C.; Lucas, J.; Nardin, D.; Gibbons, J.; Frost, P.; Ye, F.; Boschelli, D. H.; Boschelli, F. SKI-606, a 4-anilino-3-quinolinecarbonitrile dual inhibitor of Src and Abl kinases, is a potent antiproliferative agent against chronic myelogenous leukemia cells in culture and causes regression of K562 xenografts in nude mice. Cancer Res. 2003, 63, 375-381.
    • (2003) Cancer Res. , vol.63 , pp. 375-381
    • Golas, J.M.1    Arndt, K.2    Etienne, C.3    Lucas, J.4    Nardin, D.5    Gibbons, J.6    Frost, P.7    Ye, F.8    Boschelli, D.H.9    Boschelli, F.10
  • 28
    • 14744274624 scopus 로고    scopus 로고
    • Comparative analysis of two clinically active BCR-ABL kinase inhibitors reveals the role of conformation-specific binding in resistance
    • Burgess, M. R.; Skaggs, B. J.; Shah, N. P.; Lee, F. Y.; Sawyers, C. L. Comparative analysis of two clinically active BCR-ABL kinase inhibitors reveals the role of conformation-specific binding in resistance. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 3395-3400.
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 3395-3400
    • Burgess, M.R.1    Skaggs, B.J.2    Shah, N.P.3    Lee, F.Y.4    Sawyers, C.L.5
  • 29
    • 0028582185 scopus 로고
    • Crystal structure of the tyrosine kinase domain of the human insulin receptor
    • Hubbard, S. R.; Wei, L.; Ellis, L.; Hendrickson, W. A. Crystal structure of the tyrosine kinase domain of the human insulin receptor. Nature 1994, 372, 746-754.
    • (1994) Nature , vol.372 , pp. 746-754
    • Hubbard, S.R.1    Wei, L.2    Ellis, L.3    Hendrickson, W.A.4
  • 30
    • 0030766163 scopus 로고    scopus 로고
    • Crystal structure of the activated insulin receptor tyrosine kinase in complex with peptide substrate and ATP analogue
    • Hubbard, S. R. Crystal structure of the activated insulin receptor tyrosine kinase in complex with peptide substrate and ATP analogue. EMBO J. 1997, 16, 5572-5581.
    • (1997) EMBO J. , vol.16 , pp. 5572-5581
    • Hubbard, S.R.1
  • 31
    • 16144364951 scopus 로고    scopus 로고
    • Structural basis for activation of human lymphocyte kinase Lck upon tyrosine phosphorylation
    • Yamaguchi, H.; Hendrickson, W. A. Structural basis for activation of human lymphocyte kinase Lck upon tyrosine phosphorylation. Nature 1996, 384, 484-489.
    • (1996) Nature , vol.384 , pp. 484-489
    • Yamaguchi, H.1    Hendrickson, W.A.2
  • 32
    • 0030599010 scopus 로고    scopus 로고
    • A fast flexible docking method using an incremental construction algorithm
    • Rarey, M.; Kramer, B.; Lengauer, T.; Klebe, G. A fast flexible docking method using an incremental construction algorithm. J. Mol. Biol. 1996, 261, 470-489.
    • (1996) J. Mol. Biol. , vol.261 , pp. 470-489
    • Rarey, M.1    Kramer, B.2    Lengauer, T.3    Klebe, G.4
  • 36
    • 27944485366 scopus 로고    scopus 로고
    • Inhibition of ALK enzymatic activity in T-cell lymphoma cells induces apoptosis and suppresses proliferation and STAT3 phosphorylation independently of Jak3
    • Marzec, M.; Kasprzycka, M.; Ptasznik, A.; Wlodarski, P.; Zhang, Q.; Odum, N.; Wasik, M. A. Inhibition of ALK enzymatic activity in T-cell lymphoma cells induces apoptosis and suppresses proliferation and STAT3 phosphorylation independently of Jak3. Lab. Invest 2005, 85, 1544-1554.
    • (2005) Lab. Invest , vol.85 , pp. 1544-1554
    • Marzec, M.1    Kasprzycka, M.2    Ptasznik, A.3    Wlodarski, P.4    Zhang, Q.5    Odum, N.6    Wasik, M.A.7
  • 42
    • 0000931192 scopus 로고    scopus 로고
    • Fast multiple alignment of ungapped DNA sequences using information theory and a relaxation method
    • Schneider, T. D.; Mastronarde, D. Fast multiple alignment of ungapped DNA sequences using information theory and a relaxation method. Discrete Applied Mathematics 1996, 71, 259-268.
    • (1996) Discrete Applied Mathematics , vol.71 , pp. 259-268
    • Schneider, T.D.1    Mastronarde, D.2
  • 43
    • 0027361123 scopus 로고
    • A structural basis for sequence comparisons. An evaluation of scoring methodologies
    • Johnson, M. S.; Overington, J. P. A structural basis for sequence comparisons. An evaluation of scoring methodologies. J. Mol. Biol. 1993, 233, 716-738.
    • (1993) J. Mol. Biol. , vol.233 , pp. 716-738
    • Johnson, M.S.1    Overington, J.P.2
  • 45
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski, R. A.; MacArthur, M. W.; Moss, D. S.; Thornton, J. M. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 1993, 26, 283-291.
    • (1993) J. Appl. Crystallogr. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 46
    • 0033625531 scopus 로고    scopus 로고
    • TEXshade: Shading and labeling of multiple sequence alignments using LATEX2 epsilon
    • Beitz, E. TEXshade: shading and labeling of multiple sequence alignments using LATEX2 epsilon. Bioinformatics 2000, 16, 135-139.
    • (2000) Bioinformatics , vol.16 , pp. 135-139
    • Beitz, E.1


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