메뉴 건너뛰기




Volumn 33, Issue 10, 2006, Pages 801-814

Global transcriptome response of recombinant Escherichia coli to heat-shock and dual heat-shock recombinant protein induction

Author keywords

Chaperones; Chloramphenicol acetyltransferase; DNA microarrays; Gene regulation; Heat shock response; Transcriptome; tRNA

Indexed keywords

AMINO ACID; CHAPERONE; HEAT SHOCK PROTEIN; RECOMBINANT PROTEIN; TRANSCRIPTOME; TRANSFER RNA;

EID: 33748345147     PISSN: 13675435     EISSN: 14765535     Source Type: Journal    
DOI: 10.1007/s10295-006-0122-3     Document Type: Article
Times cited : (40)

References (46)
  • 1
    • 8344256552 scopus 로고    scopus 로고
    • Recombinant protein folding and misfolding in Escherichia coli
    • Baneyx F, Mujacic M (2004) Recombinant protein folding and misfolding in Escherichia coli. Nat Biotechnol 22:1399-1408
    • (2004) Nat Biotechnol , vol.22 , pp. 1399-1408
    • Baneyx, F.1    Mujacic, M.2
  • 3
    • 17444364828 scopus 로고    scopus 로고
    • Amino acid content of recombinant proteins influences the metabolic burden response
    • Bonomo J, Gill R (2005) Amino acid content of recombinant proteins influences the metabolic burden response. Biotechnol Bioeng 90:116-126
    • (2005) Biotechnol Bioeng , vol.90 , pp. 116-126
    • Bonomo, J.1    Gill, R.2
  • 4
    • 0027186528 scopus 로고
    • Characterization of twenty-six new heat shock genes of Escherichia coli
    • Chuang S-E, Blattner FR (1993) Characterization of twenty-six new heat shock genes of Escherichia coli. J Bacteriol 175:5242-5252
    • (1993) J Bacteriol , vol.175 , pp. 5242-5252
    • Chuang, S.-E.1    Blattner, F.R.2
  • 5
    • 0027457409 scopus 로고
    • Global regulation of gene-expression in Escherichia coli
    • Chuang SE, Daniels DL, Blattner FR (1993) Global regulation of gene-expression in Escherichia coli. J Bacteriol 175:2026-2036
    • (1993) J Bacteriol , vol.175 , pp. 2026-2036
    • Chuang, S.E.1    Daniels, D.L.2    Blattner, F.R.3
  • 6
    • 0033527396 scopus 로고    scopus 로고
    • Monitoring GFP-operon fusion protein expression during high cell density cultivation of Escherichia coli using an on-line optical sensor
    • DeLisa MP, Li J, Rao G, Weigand WA, Bentley WE (1999) Monitoring GFP-operon fusion protein expression during high cell density cultivation of Escherichia coli using an on-line optical sensor. Biotechnol Bioeng 65:54-64
    • (1999) Biotechnol Bioeng , vol.65 , pp. 54-64
    • DeLisa, M.P.1    Li, J.2    Rao, G.3    Weigand, W.A.4    Bentley, W.E.5
  • 7
    • 20144381079 scopus 로고    scopus 로고
    • Transcriptional response of Escherichia coli to temprature shift
    • Gadgil M, Kapur V, Hu WS (2005) Transcriptional response of Escherichia coli to temprature shift. Biotechnol Prog 21:689-699
    • (2005) Biotechnol Prog , vol.21 , pp. 689-699
    • Gadgil, M.1    Kapur, V.2    Hu, W.S.3
  • 10
    • 0035808168 scopus 로고    scopus 로고
    • Genomic analysis of high cell density recombinant Escherichia coli fermentation and "cell conditioning" for improved recombinant protein yield
    • Gill RT, Delisa MP, Valdes JJ, Bentley WE (2001) Genomic analysis of high cell density recombinant Escherichia coli fermentation and "cell conditioning" for improved recombinant protein yield. Biotechnol Bioeng 72:85-95
    • (2001) Biotechnol Bioeng , vol.72 , pp. 85-95
    • Gill, R.T.1    Delisa, M.P.2    Valdes, J.J.3    Bentley, W.E.4
  • 11
    • 0032737314 scopus 로고    scopus 로고
    • Reverse transcription-PCR differential display analysis of Escherichia coli global gene regulation in response to heat shock
    • Gill RT, Valdes JJ, Bentley WE (1999) Reverse transcription-PCR differential display analysis of Escherichia coli global gene regulation in response to heat shock. Appl Environ Microbiol 65:5386-5393
    • (1999) Appl Environ Microbiol , vol.65 , pp. 5386-5393
    • Gill, R.T.1    Valdes, J.J.2    Bentley, W.E.3
  • 13
    • 0001241680 scopus 로고    scopus 로고
    • Function and regulation of the heat shock
    • Neidhardt FC, Curtiss R, Lin ECC, Low KB, Magasanik B, Reanikoff WS, Riley M, Schaechter M, Umbarger HE (eds) ASM Press, Washington DC
    • Gross CA (1996) Function and regulation of the heat shock. In: Neidhardt FC, Curtiss R, Lin ECC, Low KB, Magasanik B, Reanikoff WS, Riley M, Schaechter M, Umbarger HE (eds) Escherichia coli and Salmonella. ASM Press, Washington DC, pp 1382-1399
    • (1996) Escherichia Coli and Salmonella , pp. 1382-1399
    • Gross, C.A.1
  • 14
    • 0022409541 scopus 로고
    • Stringent response in Escherichia coli induces expression of heat shock proteins
    • Grossman AD, Taylor WE, Burton ZF, Burgess RR, Gross CA (1985) Stringent response in Escherichia coli induces expression of heat shock proteins. J Mol Biol 186:357-365
    • (1985) J Mol Biol , vol.186 , pp. 357-365
    • Grossman, A.D.1    Taylor, W.E.2    Burton, Z.F.3    Burgess, R.R.4    Gross, C.A.5
  • 15
    • 17644376529 scopus 로고    scopus 로고
    • Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli
    • Haddadin FT, Harcum SW (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli. Biotechnol Bioeng 90:127-153
    • (2005) Biotechnol Bioeng , vol.90 , pp. 127-153
    • Haddadin, F.T.1    Harcum, S.W.2
  • 16
    • 8844219685 scopus 로고    scopus 로고
    • Roles and applications of small heat shock proteins in the production of recombinant proteins in Escherichia coli
    • Han MJ, Park SJ, Park TJ, Lee SY (2004) Roles and applications of small heat shock proteins in the production of recombinant proteins in Escherichia coli. Biotechnol Bioeng 88:426-436
    • (2004) Biotechnol Bioeng , vol.88 , pp. 426-436
    • Han, M.J.1    Park, S.J.2    Park, T.J.3    Lee, S.Y.4
  • 17
    • 0027909877 scopus 로고
    • Response dynamics of 26-, 34-, 39-, 54-, and 80-kDa proteases in induced cultures of recombinant Escherichia coli
    • Harcum SW, Bentley WE (1993) Response dynamics of 26-, 34-, 39-, 54-, and 80-kDa proteases in induced cultures of recombinant Escherichia coli. Biotechnol Bioeng 42:675-685
    • (1993) Biotechnol Bioeng , vol.42 , pp. 675-685
    • Harcum, S.W.1    Bentley, W.E.2
  • 18
    • 0033050416 scopus 로고    scopus 로고
    • Heat-shock and stringent responses have overlapping protease activity in Escherichia coli: Implications for heterologous protein yield
    • Harcum SW, Bentley WE (1999) Heat-shock and stringent responses have overlapping protease activity in Escherichia coli: Implications for heterologous protein yield. Appl Biochem Biotechnol 80:23-37
    • (1999) Appl Biochem Biotechnol , vol.80 , pp. 23-37
    • Harcum, S.W.1    Bentley, W.E.2
  • 19
    • 0026528735 scopus 로고
    • Role of the heat shock response in stability of mRNA in Escherichia coli K-12
    • Henry MD, Yancey SD, Kushner SR (1992) Role of the heat shock response in stability of mRNA in Escherichia coli K-12. J Bacteriol 174:743-748
    • (1992) J Bacteriol , vol.174 , pp. 743-748
    • Henry, M.D.1    Yancey, S.D.2    Kushner, S.R.3
  • 20
    • 0018776963 scopus 로고
    • Levels of major proteins of Escherichia coli during growth at different temperatures
    • Herendeen SL, VanBogelen RA, Neidhardt FC (1979) Levels of major proteins of Escherichia coli during growth at different temperatures. J Bacteriol 139:185-194
    • (1979) J Bacteriol , vol.139 , pp. 185-194
    • Herendeen, S.L.1    VanBogelen, R.A.2    Neidhardt, F.C.3
  • 21
    • 0035180274 scopus 로고    scopus 로고
    • Plasmid amplification in Escherichia coli after temperature up shift is impaired by induction of recombinant protein synthesis
    • Hoffmann F, Rinas U (2001) Plasmid amplification in Escherichia coli after temperature up shift is impaired by induction of recombinant protein synthesis. Biotechnol Lett 23:1819-1825
    • (2001) Biotechnol Lett , vol.23 , pp. 1819-1825
    • Hoffmann, F.1    Rinas, U.2
  • 22
    • 0037027382 scopus 로고    scopus 로고
    • Metabolic adaptation of Escherichia coli during temperature-induced recombinant protein production: 1. Readjustment of metabolic enzyme synthesis
    • Hoffmann F, Weber J, Rinas U (2002) Metabolic adaptation of Escherichia coli during temperature-induced recombinant protein production: 1. Readjustment of metabolic enzyme synthesis. Biotechnol Bioeng 80:313-319
    • (2002) Biotechnol Bioeng , vol.80 , pp. 313-319
    • Hoffmann, F.1    Weber, J.2    Rinas, U.3
  • 23
    • 0027983768 scopus 로고
    • Induction of heat shock proteins by abnormal proteins results from stabilization and not increased synthesis of r32 in Escherichia coli
    • Kanemori M, Mori H, Yura T (1994) Induction of heat shock proteins by abnormal proteins results from stabilization and not increased synthesis of r32 in Escherichia coli. J Bacteriol 176:5648-5653
    • (1994) J Bacteriol , vol.176 , pp. 5648-5653
    • Kanemori, M.1    Mori, H.2    Yura, T.3
  • 24
    • 0026355680 scopus 로고
    • Response of Escherichia coli cell membranes to induction of l cl857 prophage by heat shock
    • Kucharczyk K, Laskowska E, Taylor A (1991) Response of Escherichia coli cell membranes to induction of l cl857 prophage by heat shock. Mol Microbiol 5:2935-2945
    • (1991) Mol Microbiol , vol.5 , pp. 2935-2945
    • Kucharczyk, K.1    Laskowska, E.2    Taylor, A.3
  • 25
    • 0026726710 scopus 로고
    • Effect of overproduction of heat shock chaperones GroESL and DnaK on human procollagenase production in Escherichia coli
    • Lee SC, Olins PO (1992) Effect of overproduction of heat shock chaperones GroESL and DnaK on human procollagenase production in Escherichia coli. J Biol Chem 267:2849-2852
    • (1992) J Biol Chem , vol.267 , pp. 2849-2852
    • Lee, S.C.1    Olins, P.O.2
  • 26
    • 0017950371 scopus 로고
    • Transient rates of synthesis of individual polypeptides in E. coli following temperature shifts
    • Lemaux PG, Herendeen SL, Bloch P, Neidhardt FC (1978) Transient rates of synthesis of individual polypeptides in E. coli following temperature shifts. Cell 13:427-434
    • (1978) Cell , vol.13 , pp. 427-434
    • Lemaux, P.G.1    Herendeen, S.L.2    Bloch, P.3    Neidhardt, F.C.4
  • 27
    • 0036213467 scopus 로고    scopus 로고
    • Gene expression response to misfolded protein as a screen for soluble recombinant protein
    • Lesley SA, Graziano J, Cho CY, Knuth MW, Klock HE (2002) Gene expression response to misfolded protein as a screen for soluble recombinant protein. Protein Eng 15:153-160
    • (2002) Protein Eng , vol.15 , pp. 153-160
    • Lesley, S.A.1    Graziano, J.2    Cho, C.Y.3    Knuth, M.W.4    Klock, H.E.5
  • 28
    • 0029828233 scopus 로고    scopus 로고
    • Strategies for achieving high-level expression of genes in Escherichia coli
    • Makrides SC (1996) Strategies for achieving high-level expression of genes in Escherichia coli. Microbiol Rev 60:512
    • (1996) Microbiol Rev , vol.60 , pp. 512
    • Makrides, S.C.1
  • 30
    • 0030131709 scopus 로고    scopus 로고
    • High-level expression and efficient recovery of ubiquitin fusion proteins from Escherichia coli
    • Pilon AL, Yost P, Chase TE, Lohnas GL, Bentley WE (1996) High-level expression and efficient recovery of ubiquitin fusion proteins from Escherichia coli. Biotechnol Prog 12:331-337
    • (1996) Biotechnol Prog , vol.12 , pp. 331-337
    • Pilon, A.L.1    Yost, P.2    Chase, T.E.3    Lohnas, G.L.4    Bentley, W.E.5
  • 34
    • 0036249666 scopus 로고    scopus 로고
    • DNA microarray for microbial biotechnology: Gene expression profiles in Escherichia coli during protein overexpression
    • Rohlin L, Oh MK, Liao JC (2002) DNA microarray for microbial biotechnology: gene expression profiles in Escherichia coli during protein overexpression. J Chin Inst Chem Eng 33:103-112
    • (2002) J Chin Inst Chem Eng , vol.33 , pp. 103-112
    • Rohlin, L.1    Oh, M.K.2    Liao, J.C.3
  • 35
    • 0032970060 scopus 로고    scopus 로고
    • Temperature-induced production of recombinant human insulin in high-cell density cultures of recombinant Escherichia coli
    • Schmidt M, Babu KR, Khanna N, Marten S, Rinas U (1999) Temperature-induced production of recombinant human insulin in high-cell density cultures of recombinant Escherichia coli. J Biotechnol 68:71-83
    • (1999) J Biotechnol , vol.68 , pp. 71-83
    • Schmidt, M.1    Babu, K.R.2    Khanna, N.3    Marten, S.4    Rinas, U.5
  • 36
    • 0033230145 scopus 로고    scopus 로고
    • Secretion-dependent proteolysis of heterologous protein by recombinant Escherichia coli is connected to an increased activity of the energy-generating dissimilatory pathway
    • Schmidt M, Viaplana E, Hoffmann F, Marten S, Villaverde A, Rinas U (1999) Secretion-dependent proteolysis of heterologous protein by recombinant Escherichia coli is connected to an increased activity of the energy-generating dissimilatory pathway. Biotechnol Bioeng 66:61-67
    • (1999) Biotechnol Bioeng , vol.66 , pp. 61-67
    • Schmidt, M.1    Viaplana, E.2    Hoffmann, F.3    Marten, S.4    Villaverde, A.5    Rinas, U.6
  • 39
    • 0029971933 scopus 로고    scopus 로고
    • Influence of a global deregulation of the heat-shock response on the expression of heterologous proteins in Escherichia coli
    • Thomas JG, Baneyx F (1996) Influence of a global deregulation of the heat-shock response on the expression of heterologous proteins in Escherichia coli. Ann N Y Acad Sci 782:478-485
    • (1996) Ann N Y Acad Sci , vol.782 , pp. 478-485
    • Thomas, J.G.1    Baneyx, F.2
  • 40
    • 0029786163 scopus 로고    scopus 로고
    • Protein folding in the cytoplasm of Escherichia coli: Requirements for the DnaK-DnaJ-GrpE and GroEL-GroES molecular chaperone machines
    • Thomas JG, Baneyx F (1996) Protein folding in the cytoplasm of Escherichia coli: requirements for the DnaK-DnaJ-GrpE and GroEL-GroES molecular chaperone machines. Mol Microbiol 21:1185-1196
    • (1996) Mol Microbiol , vol.21 , pp. 1185-1196
    • Thomas, J.G.1    Baneyx, F.2
  • 41
    • 0028931060 scopus 로고
    • A stationary-phase-dependent viability block governed byt two different polypeptides from the rhsa genetic element of Escherichia coli K-12
    • Vlazny D, Hill C (1995) A stationary-phase-dependent viability block governed byt two different polypeptides from the rhsa genetic element of Escherichia coli K-12. J Bacteriol 177:2209-2213
    • (1995) J Bacteriol , vol.177 , pp. 2209-2213
    • Vlazny, D.1    Hill, C.2
  • 42
    • 0342592301 scopus 로고    scopus 로고
    • Disassembly of the coliphage l replication complex due to heat shock induction of the groE operon
    • Wegrzyn A, Wegrzyn G, Taylor K (1996) Disassembly of the coliphage l replication complex due to heat shock induction of the groE operon. Virology 217:594-597
    • (1996) Virology , vol.217 , pp. 594-597
    • Wegrzyn, A.1    Wegrzyn, G.2    Taylor, K.3
  • 43
    • 0027248425 scopus 로고
    • Accumulation of secretory protein precursors in Escherichia coli induces the heat shock response
    • Wild J, Walter WA, Gross CA, Altman E (1993) Accumulation of secretory protein precursors in Escherichia coli induces the heat shock response. J Bacteriol 175:3992-3997
    • (1993) J Bacteriol , vol.175 , pp. 3992-3997
    • Wild, J.1    Walter, W.A.2    Gross, C.A.3    Altman, E.4
  • 44
    • 18144417823 scopus 로고    scopus 로고
    • Expression of soluble, biologically active recombinant human endostatin in Escherichia coli
    • Xu HM, Zhang GY, Ji XD, Cao L, Shu L, Hua ZC (2005) Expression of soluble, biologically active recombinant human endostatin in Escherichia coli. Protein Expres Purif 41:252-258
    • (2005) Protein Expres Purif , vol.41 , pp. 252-258
    • Xu, H.M.1    Zhang, G.Y.2    Ji, X.D.3    Cao, L.4    Shu, L.5    Hua, Z.C.6
  • 45
    • 0029239753 scopus 로고
    • Thermo-inducible expression of a recombinant fusion protein by Escherichia coli lac repressor mutants
    • Yabuta M, Onaimiura S, Ohsuye K (1995) Thermo-inducible expression of a recombinant fusion protein by Escherichia coli lac repressor mutants. J Biotechnol 39:67-73
    • (1995) J Biotechnol , vol.39 , pp. 67-73
    • Yabuta, M.1    Onaimiura, S.2    Ohsuye, K.3
  • 46
    • 0017859550 scopus 로고
    • Transient regulation of protein synthesis in Escherichia coli upon shift-up of growth temperature
    • Yamamori T, Ito K, Nakamura Y, Yura T (1978) Transient regulation of protein synthesis in Escherichia coli upon shift-up of growth temperature. J Bacteriol 134:1133-1140
    • (1978) J Bacteriol , vol.134 , pp. 1133-1140
    • Yamamori, T.1    Ito, K.2    Nakamura, Y.3    Yura, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.