Reverse transcription-PCR differential display analysis of Escherichia coli global gene regulation in response to heat shock

Applied and Environmental Microbiology

Volumn 65, Issue 12, 1999, Pages 5386-5393

  Gill, R T ^a,b   Valdes, J J ^c   Bentley, W E ^a,b  

^a UNIVERSITY OF MARYLAND   (United States)

^b UNIVERSITY OF MARYLAND BIOTECHNOLOGY INSTITUTE   (United States)

^c U S ARMY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

ARTICLE; ESCHERICHIA COLI; GENE AMPLIFICATION; GENE CONTROL; HEAT SHOCK; MOLECULAR CLONING; NONHUMAN; NORTHERN BLOTTING; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SOUTHERN BLOTTING; TECHNIQUE;

EID: 0032737314     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.65.12.5386-5393.1999     Document Type: Article

References (24)

1. Berlyn, M. K. B., K. B. Low, and K. E. Rudd. 1996. Linkage map of Escherichia coli K-12, edition 9, p. 1715-1902. In F. C. Neidhardt (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. American Society for Microbiology, Washington, D.C.
2. Casadaban, M. J. 1976. Regulation of the regulatory gene for the arabinose pathway, araC. J. Mol. Biol. 104:557-566.
3. Casadaban, M. J., and S. N. Cohen. 1979. Lactose genes fused to exogenous promoters in one step using a Mu-lac bacteriophage: in vivo probe for transcriptional control sequences. Proc. Natl. Acad. Sci. USA 76:4530-4533.
4. Chuang, S., D. Daniels, and F. Blattner. 1993. Global regulation of gene expression in Escherichia coli. J. Bacteriol. 175:2026-2036.
5. Chuang, S., and F. R. Blattner. 1993. Characterization of twenty-six new heat shock genes of Escherichia coli. J. Bacteriol. 175:5242-5252.
6. de Saizieu, A., U. Certa, J. Warrington, C. Gray, W. Keck, and J. Mous. 1998. Bacterial transcript imaging by hybridization of total RNA to oligonucleotide arrays. Nature Biotechnol. 16:45-48.
7. Donohue, P., D. Hsu, and J. Winkles. 1997. Differential display using random hexamer-primed cDNA, motif primers, and agarose gel electrophoresis, p. 25-35. In Differential display methods and protocols. Humana Press, Totowa, N.J.
8. Fislage, R., M. Berceanu, Y. Humboldt, M. Wendt, and H. Oberender. 1997. Primer design for a prokaryotic differential display RT-PCR. Nucleic Acids Res. 25:1830-1835.
9. Gill, R. T., H. Cha, A. Jain, G. Rao, and W. E. Bentley. 1998. Physiological effects of DTT addition to E. coli including growth rate, specific oxygen uptake, heat shock protein expression, and specific activity of recombinant protein. Biotechnol. Bioeng. 59:248-259.
10. Gilliland, G., S. Perrin, and F. Bunn. 1990. Competitive PCR for quantitation of mRNA, p. 60-69. In PCR protocols: a guide to methods and applications. Academic Press, Inc., San Diego, Calif.
11. Gross, C. A. 1996. Function and regulation of the heat shock proteins, p. 1382-1399. In F. C. Neidhardt (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. American Society for Microbiology, Washington, D.C.
12. Kenyon, C. J., and G. C. Walker. 1980. DNA-damaging agents stimulate gene expression at specific loci in Escherichia coli. Proc. Natl. Acad. Sci. USA 177:2819-2823.
13. Kohara, U., K. Akiyama, and K. Isono. 1987. The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50:495-508.
14. Liang, P., and A. B. Pardee. 1992. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257:967-971.
15. 14a. National Center for Biotechnology Information. 13 October 1999, posting date. [Online.] National Institutes of Health, http://www.ncbi.nlm.nih.gov. [27 October 1999, last date accessed.]
16. O'Farell, P. H. 1975. High resolution two-dimensional electrophoresis of proteins. J. Biol. Chem. 250:4007-4021.
17. Pederson, S., P. L. Bloch, S. Reeh, and F. C. Neidhardt. 1978. Patterns of protein synthesis in E. coli: a catalog of the amount of 140 individual proteins at different growth rates. Cell 14:179-190.
18. Rodriguez, R. L., and R. E. Tait. 1983. Recombinant DNA techniques: an introduction. Benjamin/Cummings, Menlo Park, Calif.
19. Rupani, S., M. B. Gu, K. B. Konstantinov, P. S. Dhurjati, T. K. Van Dyk, and R. A. LaRossa. 1996. Characterization of the stress response of a bioluminescent biological sensor in batch and continuous cultures. Biotechnol. Prog. 12:387-392.
20. Southern, E. M. 1975. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98:503-517.
21. Van Dyk, T. K., W. R. Majarian, K. B. Konstantinov, R. M. Young, P. S. Dhurjati, and R. A. Larossa. 1994. Rapid and sensitive pollutant detection by induction of heat shock gene-bioluminescence gene fusions. Appl. Environ. Microbiol. 60:1414-1420.
22. Wan, J., and M. Erlander. 1997. Cloning differentially expressed genes by using differential display and subtractive hybridization, p. 45-68. In Differential display methods and protocols. Humana Press, Totowa, N.J.
23. Welsh, J., K. Chada, S. Dalal, R. Cheng, D. Ralph, and M. McClelland. 1992. Arbitrarily primed PCR fingerprinting of RNA. Nucleic Acids Res. 20:4965-4970.
24. Wong, K. K., and M. McClelland. 1994. Stress-inducible gene of Salmonella typhimurium identified by arbitrarily primed PCR of RNA. Proc. Natl. Acad. Sci. USA 91:639-643.