Transcriptional response of Escherichia coli to temperature shift

Biotechnology Progress

Volumn 21, Issue 3, 2005, Pages 689-699

  Gadgil, Mugdha ^a   Kapur, Vivek ^b   Hu, Wei Shou ^a  

^a University of Minnesota   (United States)

^b UNIVERSITY OF MINNESOTA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BIOSYNTHESIS; BIOTECHNOLOGY; CELL CULTURE; DNA; ENZYMES; GLUCOSE; GROWTH KINETICS; METABOLISM; METABOLITES; PHYSIOLOGY;

ENERGY METABOLISM; GENES ENCODING ENZYMES; GROWTH RATE; TEMPERATURE SHIFT;

ESCHERICHIA COLI;

ESCHERICHIA COLI PROTEIN; PROTEOME; TRANSCRIPTION FACTOR;

ADAPTATION; ARTICLE; DNA MICROARRAY; ENERGY METABOLISM; ESCHERICHIA COLI; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; METABOLISM; PHYSIOLOGY; PROTEIN SYNTHESIS; SIGNAL TRANSDUCTION; TEMPERATURE;

ADAPTATION, PHYSIOLOGICAL; ENERGY METABOLISM; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEIN BIOSYNTHESIS; PROTEOME; SIGNAL TRANSDUCTION; TEMPERATURE; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

ESCHERICHIA COLI;

EID: 20144381079     PISSN: 87567938     EISSN: None     Source Type: Journal    
DOI: 10.1021/bp049630l     Document Type: Article

References (42)

1. Ingraham, J. L.; Marr, A. G. In Escherichia coli and salmonella: Cellular and molecular biology, Neidhardt, F. C., Curtiss, R., Eds.; ASM Press: Washington, DC, 1996; p 2 v.
2. Chalmers, J. J.; Kim, E.; Telford, J. N.; Wong, E. Y.; Tacon, W. C.; Shuler, M. L.; Wilson, D. B. Effects of temperature on Escherichia coli overproducing beta-lactamase or human epidermal growth factor. Appl. Environ. Microbiol. 1990, 56, 104-111.
3. Kim, S. S.; Kim, E. K.; Rhee, J. S. Effects of growth rate on the production of pseudomonas fluorescens lipase during the fed-batch cultivation of Escherichia coli. Biotechnol. Prog. 1996, 12, 718-722.
4. Schein, C. H.; Noteborn, M. H. M. Formation of soluble recombinant proteins in Escherichia coli is favored by lower growth temperatures. Bio/Technology 1988, 6, 291-294.
5. Takagi, H.; Morinaga, Y.; Tsuchiya, M.; Ikemura, H.; Inouye, M. Control of folding of proteins secreted by a high expression secretion vector, piniiiompa: 16-fold increase in production of active subtilisin E in Escherichia coli. Bio/Technology 1988, 6, 948-950.
6. Escher, A.; O'Kane, D. J.; Lee, J.; Szalay, A. A. Bacterial luciferase alpha beta fusion protein is fully active as a monomer and highly sensitive in vivo to elevated temperature. Proc. Natl. Acad. Sci. U.S.A. 1989, 86, 6528-6532.
7. Cabilly, S. Growth at sub-optimal temperatures allows the production of functional, antigen-binding fab fragments in Escherichia coli. Gene 1989, 85, 553-557.
8. Steczko, J.; Donoho, G. A.; Dixon, J. E.; Sugimoto, T.; Axelrod, B. Effect of ethanol and low-temperature culture on expression of soybean lipoxygenase 1-1 in Escherichia coli. Protein Expression Purif. 1991, 2, 221-227.
9. Liao, H. H. Effect of temperature on the expression of wildtype and thermostable mutants of kanamycin nucleotidyltransferase in Escherichia coli. Protein Expression Purif. 1991, 2, 43-50.
10. Browner, M. F.; Rasor, P.; Tugendreich, S.; Fletterick, R. J. Temperature-sensitive production of rabbit muscle glycogen phosphorylase in Escherichia coli. Protein Eng. 1991, 4, 351-357.
11. Zhang, Y.; Taiming, L.; Liu, J. Low temperature and glucose enhanced t7 rna polymerase-based plasmid stability for increasing expression of glucagon-like peptide-2 in Escherichia coli. Protein Expression Purif. 2003, 29, 132-139.
12. Emerick, A. W.; Bertaloni,. B. L.; Ben-Bassat, A.; White, T. J.; Konraad, M. W. Expression of β-lactamase preproinsulin fusion protein in Escherichia coli. Bio/Technology 1984, 2, 165-168.
13. Chesshyre, J. A.; Hipkiss, A. R. Low temperatures stabilize interferon α-2 against proteolysis in Methylophilus methylotrophus and Escherichia coli. Appl. Microbiol. Biotechnol. 1989, 31, 158-162.
14. Gonzalez, B.; Ceciliani, F.; Galizzi, A. Growth at low-temperature suppresses read through of the uga stop codon during the expression of Bacillus subtilis flgM gene in Escherichia coli. J. Biotechnol. 2003, 101, 173-180.
15. Graumann, P.; Marahiel, M. A. Some like it cold: Response of microorganisms to cold shock. Arch. Microbiol. 1996, 166, 293-300.
16. Jones, P. G.; Inouye, M. The cold-shock response - a hot topic. Mol. Microbiol. 1994, 11, 811-818.
17. Phadtare, S.; Alsina, J.; Inouye, M. Cold-shock response and cold-shock proteins. Curr. Opin. Microbiol. 1999, 2, 175-180.
18. Polissi, A.; De Laurentis, W.; Zangrossi, S.; Briani, F.; Longhi, V.; Pesole, G.; Deho, G. Changes in Escherichia coli transcriptome during acclimatization at low temperature. Res. Microbiol. 2003, 154, 573-580.
19. Yamanaka, K. Cold shock response in Escherichia coli. J. Mol. Microbiol. Biotechnol. 1999, 1, 193-202.
20. Herendeen, S. L.; VanBogelen, R. A.; Neidhardt, F. C. Levels of major proteins of Escherichia coli during growth at different temperatures. J. Bacteriol. 1979, 139, 185-194.
21. Dennis, P. P.; Bremer, H. Macromolecular composition during steady-state growth of Escherichia coli B-r. J. Bacteriol. 1974, 119, 270-281.
22. Ryals, J.; Little, R.; Bremer, H. Temperature dependence of RNA synthesis parameters in Escherichia coli. J. Bacteriol. 1982, 151, 879-887.
23. Karp, P. D.; Arnaud, M.; Collado-Vides, J.; Ingraham, J.; Paulsen, I. T.; Saier, M. H. J. The E. coli Ecocyc database: No longer just a metabolic pathway database. ASM News 2004, 70, 25-30.
24. Jones, P. G.; VanBogelen, R. A.; Neidhardt, F. C. Induction of proteins in response to low temperature in Escherichia coli. J. Bacteriol. 1987, 169, 2092-2095.
25. van der Rest, M. E.; Frank, C.; Molenaar, D. Functions of the membrane-associated and cytoplasmic malate dehydrogenases in the citric acid cycle of Escherichia coli. J. Bacteriol. 2000, 182, 6892-6899.
26. Tseng, C. P.; Yu, C. C.; Lin, H. H.; Chang, C. Y.; Kuo, J. T. Oxygen- and growth rate-dependent regulation of Escherichia coli fumarase (fumA, fumB, and fumC) activity. J. Bacteriol. 2001, 183, 461-467.
27. Ruiz-Herrera, J.; Ramirez, A. M. Solubilization and properties of succinate dehydrogenase from Escherichia coli. Rev. Latinoam. Microbiol. 1973, 15, 133-138.
28. Murphey, W. H.; Barnaby, C.; Lin, F. J.; Kaplan, N. O. Malate dehydrogenases. Ii. Purification and properties of Bacillus subtilis, Bacillus stearothermophilus, and Escherichia coli malate dehydrogenases. J. Biol. Chem. 1967, 242, 1548-1559.
29. Chao, G.; Shen, J.; Tseng, C. P.; Park, S. J.; Gunsalus, R. P. Aerobic regulation of isocitrate dehydrogenase gene (icd) expression in Escherichia coli by the arcA and fnr gene products. J. Bacteriol. 1997, 179, 4299-4304.
30. Park, S. J.; Cotter, P. A.; Gunsalus, R. P. Regulation of malate dehydrogenase (mdh) gene expression in Escherichia coli in response to oxygen, carbon, and heme availability. J. Bacteriol. 1995, 177, 6652-6656.
31. Park, S. J.; McCabe, J.; Turna, J.; Gunsalus, R. P. Regulation of the citrate synthase (gltA) gene of Escherichia coli in response to anaerobiosis and carbon supply: Role of the arcA gene product. J. Bacteriol. 1994, 176, 5086-5092.
32. Park, S. J.; Tseng, C. P.; Gunsalus, R. P. Regulation of succinate dehydrogenase (sdhCDAB) operon expression in Escherichia coli in response to carbon supply and anaerobiosis: Role of arcA and fnr. Mol. Microbiol. 1995, 15, 473-482.
33. Wall, D.; Delaney, J. M.; Fayet, O.; Lipinska, B.; Yamamoto, T.; Georgopoulos, C. Arc-dependent thermal regulation and extragenic suppression of the Escherichia coli cytochrome d operon. J. Bacteriol. 1992, 174, 6554-6562.
34. Kumari, S.; Simel, E. J.; Wolfe, A. J. Sigma(70) is the principal sigma factor responsible for transcription of acs, which encodes acetyl coenzyme a synthetase in Escherichia coli. J. Bacteriol. 2000, 182, 551-554.
35. Abdel-Hamid, A. M.; Attwood, M. M.; Guest, J. R. Pyruvate oxidase contributes to the aerobic growth efficiency of Escherichia coli. Microbiology 2001, 147, 1483-1498.
36. Lelivelt, M. J.; Kawula, T. H. Hsc66, an hsp70 homolog in Escherichia coli, is induced by cold shock but not by heat shock. J. Bacteriol. 1995, 177, 4900-4907.
37. Broeze, R. J.; Solomon, C. J.; Pope, D. H. Effects of low temperature on in vivo and in vitro protein synthesis in Escherichia coli and Pseudomonas fluorescens. J. Bacteriol. 1978, 134, 861-874.
38. Friedman, H.; Lu, P.; Rich, A. Temperature control of initiation of protein synthesis in Escherichia coli. J. Mol. Biol. 1971, 61, 105-121.
39. Cummings, H. S.; Hershey, J. W. Translation initiation factor IF1 is essential for cell viability in Escherichia coli. J. Bacteriol. 1994, 176, 198-205.
40. de Mendoza, D.; Cronan, J. E., Jr. Thermal regulation of membrane lipid fluidity in bacteria. Trends Biochem. Sci. 1983, 8, 49-52.
41. Lai, C. Y.; Cronan, J. E. Beta-ketoacyl-acyl carrier protein synthase III (fabH) is essential for bacterial fatty acid synthesis. J. Biol. Chem. 2003, 278, 51494-51503.
42. Mileykovskaya, E. I.; Dowhan, W. Alterations in the electron transfer chain in mutant strains of Escherichia coli lacking phosphatidylethanolamine. J. Biol. Chem. 1993, 268, 24824-24831.