-
1
-
-
0026495873
-
Secondary structure of the self-cleaving RNA of hepatitis delta virus: Applications to catalytic RNA design
-
Been MD, Perrotta AT, Rosenstein SP (1992) Secondary structure of the self-cleaving RNA of hepatitis delta virus: applications to catalytic RNA design. Biochemistry 31:11843-11852
-
(1992)
Biochemistry
, vol.31
, pp. 11843-11852
-
-
Been, M.D.1
Perrotta, A.T.2
Rosenstein, S.P.3
-
2
-
-
0030803589
-
Self-cleaving ribozymes of Hepatitis Delta Virus
-
Been MD, Wickham GS (1997) Self-cleaving ribozymes of Hepatitis Delta Virus. Eur J Biochem 247:741-753
-
(1997)
Eur J Biochem
, vol.247
, pp. 741-753
-
-
Been, M.D.1
Wickham, G.S.2
-
3
-
-
4344584210
-
Design of a highly reactive HDV ribozyme sequence uncovers facilitation of RNA folding by alternative pairings and physiological ionic strength
-
Brown TS, Chadalavada DM, Bevilacqua PC (2004) Design of a highly reactive HDV ribozyme sequence uncovers facilitation of RNA folding by alternative pairings and physiological ionic strength. J Mol Biol 341:695-712
-
(2004)
J Mol Biol
, vol.341
, pp. 695-712
-
-
Brown, T.S.1
Chadalavada, D.M.2
Bevilacqua, P.C.3
-
4
-
-
4444297561
-
Fast cleavage kinetics of a natural hammerhead ribozyme: Folding of the natural hammerhead ribozyme is enhanced by interaction of auxiliary elements
-
Canny MD, Jucker FM, Kellogg E, Khvorova A, Jayasena SD, Pardi A, Penedo JC (2004) Fast cleavage kinetics of a natural hammerhead ribozyme: Folding of the natural hammerhead ribozyme is enhanced by interaction of auxiliary elements. JACS 126:10848-10849
-
(2004)
JACS
, vol.126
, pp. 10848-10849
-
-
Canny, M.D.1
Jucker, F.M.2
Kellogg, E.3
Khvorova, A.4
Jayasena, S.D.5
Pardi, A.6
Penedo, J.C.7
-
5
-
-
0002160687
-
Building a catalytic active site using only RNA
-
Gesteland RF, Cech TR, Atkins JF eds, Cold Spring Harbor Laboratory Press, Cold Spring Harbor. pp
-
Cech TR, Golden BL (1998). Building a catalytic active site using only RNA. In Gesteland RF, Cech TR, Atkins JF (eds) The RNA World. Cold Spring Harbor Laboratory Press, Cold Spring Harbor. pp. 321-349
-
(1998)
The RNA World
, pp. 321-349
-
-
Cech, T.R.1
Golden, B.L.2
-
6
-
-
0034636981
-
A role for upstream RNA structure in facilitating the catalytic fold of the genomic hepatitis delta virus ribozyme
-
Chadalavada DM, Knudsen SM, Nakano S, Bevilacqua PC (2000) A role for upstream RNA structure in facilitating the catalytic fold of the genomic hepatitis delta virus ribozyme. J Mol Biol 301:349-367
-
(2000)
J Mol Biol
, vol.301
, pp. 349-367
-
-
Chadalavada, D.M.1
Knudsen, S.M.2
Nakano, S.3
Bevilacqua, P.C.4
-
7
-
-
0036289258
-
The folding pathway of the genomic hepatitis delta virus ribozyme is dominated by slow folding of the pseudoknots
-
Chadalavada DM, Senchak SE, Bevilacqua PC (2002) The folding pathway of the genomic hepatitis delta virus ribozyme is dominated by slow folding of the pseudoknots. J Mol Biol 317:559-575
-
(2002)
J Mol Biol
, vol.317
, pp. 559-575
-
-
Chadalavada, D.M.1
Senchak, S.E.2
Bevilacqua, P.C.3
-
8
-
-
0035020626
-
The hammerhead cleavage reaction inmonovalent cations
-
Curtis EA, Bartel DP (2001) The hammerhead cleavage reaction inmonovalent cations. RNA 7:546-552
-
(2001)
RNA
, vol.7
, pp. 546-552
-
-
Curtis, E.A.1
Bartel, D.P.2
-
9
-
-
24644454458
-
Active site cytosine in the hepatitis delta virus ribozyme provides general acid catalysis
-
Das SR, Piccirilli JA (2005). Active site cytosine in the hepatitis delta virus ribozyme provides general acid catalysis. Nature Chem Biol 1:45-52
-
(2005)
Nature Chem Biol
, vol.1
, pp. 45-52
-
-
Das, S.R.1
Piccirilli, J.A.2
-
10
-
-
0033787391
-
Ribozyme structures and mechanisms. Annu Rev Biochem
-
Doherty EA, Doudna JA (2000) Ribozyme structures and mechanisms. Annu Rev Biochem 69:597-615. 69:597-615
-
(2000)
, vol.69
, pp. 597-615
-
-
Doherty, E.A.1
Doudna, J.A.2
-
11
-
-
0042509891
-
A helical twist-induced conformational switch activates cleavage in the hammerhead ribozyme
-
Dunham CM, Murray JB, Scott WG (2003) A helical twist-induced conformational switch activates cleavage in the hammerhead ribozyme. J Mol Biol 332:327-336
-
(2003)
J Mol Biol
, vol.332
, pp. 327-336
-
-
Dunham, C.M.1
Murray, J.B.2
Scott, W.G.3
-
12
-
-
0030798881
-
Analysis of the cleavage reaction of a trans-acting human hepatitis delta virus ribozyme
-
Fauzi H, Kawakami J, Nishikawa F, Nishikawa S (1997) Analysis of the cleavage reaction of a trans-acting human hepatitis delta virus ribozyme. Nucleic Acids Res 25:3124-3130
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3124-3130
-
-
Fauzi, H.1
Kawakami, J.2
Nishikawa, F.3
Nishikawa, S.4
-
13
-
-
0027310473
-
Catalytically active geometry in the reversible circularization of 'mini-monomer' RNAs derived from the complementary strand of tobacco ringspot virus satellite RNA
-
Feldstein PA, Bruening G (1993) Catalytically active geometry in the reversible circularization of 'mini-monomer' RNAs derived from the complementary strand of tobacco ringspot virus satellite RNA. Nucl Acids Res 21:1991-1998
-
(1993)
Nucl Acids Res
, vol.21
, pp. 1991-1998
-
-
Feldstein, P.A.1
Bruening, G.2
-
14
-
-
0347133497
-
The hairpin ribozyme
-
Ferré-D'Amaré AR (2004) The hairpin ribozyme. Biopolymers 73:71-78
-
(2004)
Biopolymers
, vol.73
, pp. 71-78
-
-
Ferré-D'Amaré, A.R.1
-
16
-
-
0034695419
-
Crystallization and structure determination of a hepatitis delta virus ribozyme: Use of the RNA-binding protein U1A as a crystallization module
-
Ferré-D'Amaré AR, Doudna JA (2000) Crystallization and structure determination of a hepatitis delta virus ribozyme: use of the RNA-binding protein U1A as a crystallization module. J Mol Biol 295:541-556
-
(2000)
J Mol Biol
, vol.295
, pp. 541-556
-
-
Ferré-D'Amaré, A.R.1
Doudna, J.A.2
-
17
-
-
0036863323
-
The hairpin ribozyme: Fromcrystal structure to function
-
Ferré-D'Amaré AR, Rupert PB (2002) The hairpin ribozyme: fromcrystal structure to function. Bioch Soc Trans 30:1105-1109
-
(2002)
Bioch Soc Trans
, vol.30
, pp. 1105-1109
-
-
Ferré-D'Amaré, A.R.1
Rupert, P.B.2
-
18
-
-
0032497521
-
Crystal structure of a hepatitis delta virus ribozyme
-
Ferré-D'Amaré AR, Zhou K, Doudna JA (1998a) Crystal structure of a hepatitis delta virus ribozyme. Nature 395:567-574
-
(1998)
Nature
, vol.395
, pp. 567-574
-
-
Ferré-D'Amaré, A.R.1
Zhou, K.2
Doudna, J.A.3
-
21
-
-
0016684596
-
The enthalpies of hydrolysis of acyclic, monocyclic, and glycoside cyclic phosphate diesters
-
Gerlt JA, Westheimer FH, Sturtevant JM (1975) The enthalpies of hydrolysis of acyclic, monocyclic, and glycoside cyclic phosphate diesters. J Biol Chem 250:5059-5067
-
(1975)
J Biol Chem
, vol.250
, pp. 5059-5067
-
-
Gerlt, J.A.1
Westheimer, F.H.2
Sturtevant, J.M.3
-
22
-
-
0031194873
-
A unique mechanism for RNA catalysis: The role of metal cofactors in hairpin ribozyme cleavage
-
Hampel A, Cowan JA (1997) A unique mechanism for RNA catalysis: the role of metal cofactors in hairpin ribozyme cleavage. Chem Biol 4:513-517
-
(1997)
Chem Biol
, vol.4
, pp. 513-517
-
-
Hampel, A.1
Cowan, J.A.2
-
23
-
-
0024340908
-
RNA catalytic properties of the minimum(-)sTRSV sequence
-
Hampel A, Tritz R. 1989. RNA catalytic properties of the minimum(-)sTRSV sequence. Biochemistry 28:4929-4933
-
(1989)
Biochemistry
, vol.28
, pp. 4929-4933
-
-
Hampel, A.1
Tritz, R.2
-
24
-
-
0037044320
-
Local conformational changes in the catalytic core of the trans-acting hepatitis delta virus ribozyme accompany catalysis
-
Harris DA, Rueda D, Walter NG (2002) Local conformational changes in the catalytic core of the trans-acting hepatitis delta virus ribozyme accompany catalysis. Biochemistry 41:12051-12061
-
(2002)
Biochemistry
, vol.41
, pp. 12051-12061
-
-
Harris, D.A.1
Rueda, D.2
Walter, N.G.3
-
25
-
-
0028837570
-
Kinetics and thermodynamics of intermolecular catalysis by hairpin ribozymes
-
Hegg LA, Fedor FJ (1995) Kinetics and thermodynamics of intermolecular catalysis by hairpin ribozymes. Biochemistry 34:15813-15828
-
(1995)
Biochemistry
, vol.34
, pp. 15813-15828
-
-
Hegg, L.A.1
Fedor, F.J.2
-
26
-
-
0028906353
-
The internal equilibrium of the hammerhead ribozyme reaction
-
Hertel KJ, Uhlenbeck OC (1995) The internal equilibrium of the hammerhead ribozyme reaction. Biochemistry 34:1744-1749
-
(1995)
Biochemistry
, vol.34
, pp. 1744-1749
-
-
Hertel, K.J.1
Uhlenbeck, O.C.2
-
28
-
-
0029870404
-
A pseudoknot ribozyme structure is active in vivo and required for hepatitis delta virus RNA replication
-
Lai MMC
-
Jeng K-S, Daniel A, Lai MMC (1996) A pseudoknot ribozyme structure is active in vivo and required for hepatitis delta virus RNA replication. J Virol 70:2403-2410
-
(1996)
J Virol
, vol.70
, pp. 2403-2410
-
-
Jeng, K.-S.1
Daniel, A.2
-
29
-
-
2442641641
-
A conformational switch controls hepatitis delta virus ribozyme catalysis
-
Ke A, Zhou K, Ding F, Cate JH, Doudna JA (2004) A conformational switch controls hepatitis delta virus ribozyme catalysis. Nature 429:201-205
-
(2004)
Nature
, vol.429
, pp. 201-205
-
-
Ke, A.1
Zhou, K.2
Ding, F.3
Cate, J.H.4
Doudna, J.A.5
-
30
-
-
0043009734
-
Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity
-
Khvorova A LA, Westhof E, Jayasena SD (2003) Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity. Nature Struct Biol 10:708-712
-
(2003)
Nature Struct Biol
, vol.10
, pp. 708-712
-
-
Khvorova, A.L.1
Westhof, E.2
Jayasena, S.D.3
-
31
-
-
0024209351
-
Characterization of self-cleaving RNA sequences on the genome and antigenome of human hepatitis delta virus
-
Kuo MY-P, Sharmeen L, Dinter-Gottleib G, Taylor J (1988) Characterization of self-cleaving RNA sequences on the genome and antigenome of human hepatitis delta virus. J Virol 62:4439-4444
-
(1988)
J Virol
, vol.62
, pp. 4439-4444
-
-
Kuo, M.Y.-P.1
Sharmeen, L.2
Dinter-Gottleib, G.3
Taylor, J.4
-
32
-
-
0028888173
-
Intracellular cleavage and ligation of hepatitis delta virus genomic RNA: Regulation of ribozyme activity by cis-acting sequences and host factors
-
Lazinski DW, Taylor JM (1995a) Intracellular cleavage and ligation of hepatitis delta virus genomic RNA: Regulation of ribozyme activity by cis-acting sequences and host factors. J Virol 69:1190-1200
-
(1995)
J Virol
, vol.69
, pp. 1190-1200
-
-
Lazinski, D.W.1
Taylor, J.M.2
-
33
-
-
0029295386
-
Regulation of the hepatitis delta virus ribozymes: To cleave or not to cleave?
-
Lazinski DW, Taylor JM (1995b) Regulation of the hepatitis delta virus ribozymes: To cleave or not to cleave? RNA 1:225-233
-
(1995)
RNA
, vol.1
, pp. 225-233
-
-
Lazinski, D.W.1
Taylor, J.M.2
-
34
-
-
0027535112
-
Replication of hepatitis delta virus RNA: Effect of mutations of the autocatalytic cleavage sites
-
Lai MMC
-
MacNaughton TB, Wang Y-J, Lai MMC (1993) Replication of hepatitis delta virus RNA: effect of mutations of the autocatalytic cleavage sites. J Virol 67:2228-2234
-
(1993)
J Virol
, vol.67
, pp. 2228-2234
-
-
MacNaughton, T.B.1
Wang, Y.-J.2
-
35
-
-
0032061318
-
Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops
-
Murchie AI, Thomson JB, Walter F, Lilley DM (1998) Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops. Mol Cell 1:873-881
-
(1998)
Mol Cell
, vol.1
, pp. 873-881
-
-
Murchie, A.I.1
Thomson, J.B.2
Walter, F.3
Lilley, D.M.4
-
36
-
-
0036293201
-
A pH-dependent conformational change, rather than the chemical step, appears to be rate-limiting in the hammerhead ribozyme cleavage reaction
-
Murray JB, Dunham CM, Scott WG (2002) A pH-dependent conformational change, rather than the chemical step, appears to be rate-limiting in the hammerhead ribozyme cleavage reaction. J Mol Biol 315:121-130
-
(2002)
J Mol Biol
, vol.315
, pp. 121-130
-
-
Murray, J.B.1
Dunham, C.M.2
Scott, W.G.3
-
37
-
-
0032192761
-
The hammerhead, hairpin and VS ribozymes are catalytically proficient inmonovalent cations alone
-
Murray JB, Seyhan AA, Walter NG, Burke JM, Scott WG (1998) The hammerhead, hairpin and VS ribozymes are catalytically proficient inmonovalent cations alone. Chem Biol 5:587-595
-
(1998)
Chem Biol
, vol.5
, pp. 587-595
-
-
Murray, J.B.1
Seyhan, A.A.2
Walter, N.G.3
Burke, J.M.4
Scott, W.G.5
-
38
-
-
0037452909
-
Mechanistic characterization of the HDV genomic ribozyme: Classifying the catalytic and structural metal ion sites within a multichannel reaction mechanism
-
Nakano S, Cerrone AL, Bevilacqua PC (2003) Mechanistic characterization of the HDV genomic ribozyme: classifying the catalytic and structural metal ion sites within a multichannel reaction mechanism. Biochemistry 42:2982-2994
-
(2003)
Biochemistry
, vol.42
, pp. 2982-2994
-
-
Nakano, S.1
Cerrone, A.L.2
Bevilacqua, P.C.3
-
39
-
-
0034712097
-
General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme
-
Nakano S-I, Chadalavada DM, Bevilacqua PC (2000) General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme. Science 287:1493-1497
-
(2000)
Science
, vol.287
, pp. 1493-1497
-
-
Nakano, S.-I.1
Chadalavada, D.M.2
Bevilacqua, P.C.3
-
40
-
-
0035833978
-
Mechanistic characterization of the HDV genomic ribozyme: Assessing the catalytic and structural contributions of divalent metal ions within a multi-channel reaction mechanism
-
Nakano S-I, Proctor DJ, Bevilacqua PC (2001) Mechanistic characterization of the HDV genomic ribozyme: assessing the catalytic and structural contributions of divalent metal ions within a multi-channel reaction mechanism. Biochemistry 40:12022-12038
-
(2001)
Biochemistry
, vol.40
, pp. 12022-12038
-
-
Nakano, S.-I.1
Proctor, D.J.2
Bevilacqua, P.C.3
-
41
-
-
0034651676
-
Requirement for canonical base pairing in the short pseudoknot structure of genomic hepatitis delta virus ribozyme
-
Nishikawa F, Nishikawa S (2000) Requirement for canonical base pairing in the short pseudoknot structure of genomic hepatitis delta virus ribozyme. Nucl Acids Res 28:925-931
-
(2000)
Nucl Acids Res
, vol.28
, pp. 925-931
-
-
Nishikawa, F.1
Nishikawa, S.2
-
42
-
-
0035001461
-
Comparison of the hammerhead cleavage reactions stimulated by monovalent and divalent cations
-
O'Rear JL, Wang S, Feig AL, Beigelman L, Uhlenbeck OC, Herschlag D (2001) Comparison of the hammerhead cleavage reactions stimulated by monovalent and divalent cations. RNA 7:537-545
-
(2001)
RNA
, vol.7
, pp. 537-545
-
-
O'Rear, J.L.1
Wang, S.2
Feig, A.L.3
Beigelman, L.4
Uhlenbeck, O.C.5
Herschlag, D.6
-
43
-
-
0034715489
-
Biochemical detection of dytidine protonation within RNA
-
Oyelere AK, Strobel SA (2000) Biochemical detection of dytidine protonation within RNA. JACS 122:10259-10267
-
(2000)
JACS
, vol.122
, pp. 10259-10267
-
-
Oyelere, A.K.1
Strobel, S.A.2
-
44
-
-
0037154091
-
Reaction pathway of the trans-acting hepatitis delta virus ribozyme: A conformational change accompanies catalysis
-
Pereira MJ, Harris DA, Rueda D, Walter NG (2002) Reaction pathway of the trans-acting hepatitis delta virus ribozyme: A conformational change accompanies catalysis. Biochemistry 41:730-740
-
(2002)
Biochemistry
, vol.41
, pp. 730-740
-
-
Pereira, M.J.1
Harris, D.A.2
Rueda, D.3
Walter, N.G.4
-
45
-
-
0025597973
-
The self-cleaving domain from the genomic RNA of hepatitis delta virus: Sequence requirements and the effects of denaturant
-
Perrotta AT, Been MD (1990) The self-cleaving domain from the genomic RNA of hepatitis delta virus: sequence requirements and the effects of denaturant. Nucl Acids Res 18:6821-6827
-
(1990)
Nucl Acids Res
, vol.18
, pp. 6821-6827
-
-
Perrotta, A.T.1
Been, M.D.2
-
46
-
-
0025882069
-
A pseudoknot-like structure required for efficient self-cleavage of hepatitis delta virus RNA
-
Perrotta AT, Been MD (1991) A pseudoknot-like structure required for efficient self-cleavage of hepatitis delta virus RNA. Nature 350:434-436
-
(1991)
Nature
, vol.350
, pp. 434-436
-
-
Perrotta, A.T.1
Been, M.D.2
-
47
-
-
0026594927
-
Cleavage of oligoribonucleotides by a ribozyme derived from the hepatitis δ virus RNA sequence
-
Perrotta AT, Been MD (1992) Cleavage of oligoribonucleotides by a ribozyme derived from the hepatitis δ virus RNA sequence. Biochemistry 31:16-21
-
(1992)
Biochemistry
, vol.31
, pp. 16-21
-
-
Perrotta, A.T.1
Been, M.D.2
-
48
-
-
0027260940
-
Assessment of disparate structural features in three models of the hepatitis delta virus ribozyme
-
Perrotta AT, Been MD (1993) Assessment of disparate structural features in three models of the hepatitis delta virus ribozyme. Nucl Acids Res 21:3959-3965
-
(1993)
Nucl Acids Res
, vol.21
, pp. 3959-3965
-
-
Perrotta, A.T.1
Been, M.D.2
-
49
-
-
0029964591
-
Core sequences and a cleavage site wobble pair required for HDV antigenomic ribozyme self-cleavage
-
Perrotta AT, Been MD (1996) Core sequences and a cleavage site wobble pair required for HDV antigenomic ribozyme self-cleavage. Nucl Acids Res 24:1314-1321
-
(1996)
Nucl Acids Res
, vol.24
, pp. 1314-1321
-
-
Perrotta, A.T.1
Been, M.D.2
-
50
-
-
0032486091
-
A toggle duplex in hepatitis delta virus self-cleaving RNA that stabilizes an inactive and a salt-dependent pro-active ribozyme conformation
-
Perrotta AT, Been MD (1998) A toggle duplex in hepatitis delta virus self-cleaving RNA that stabilizes an inactive and a salt-dependent pro-active ribozyme conformation. J Mol Biol 279:361-373
-
(1998)
J Mol Biol
, vol.279
, pp. 361-373
-
-
Perrotta, A.T.1
Been, M.D.2
-
51
-
-
0033081861
-
A conserved bulged adenosine in a peripheral duplex of the antigenomic HDV self-cleaving RNA reduces kinetic trapping of inactive conformations
-
Perrotta AT, Nikiforova O, Been MD (1999a) A conserved bulged adenosine in a peripheral duplex of the antigenomic HDV self-cleaving RNA reduces kinetic trapping of inactive conformations. Nucl Acids Res 27:795-802
-
(1999)
Nucl Acids Res
, vol.27
, pp. 795-802
-
-
Perrotta, A.T.1
Nikiforova, O.2
Been, M.D.3
-
52
-
-
0033215448
-
Imidazole Rescue of a Cytosine Mutation in a Self-Cleaving Ribozyme
-
Perrotta AT, Shih I-h, Been MD (1999b) Imidazole Rescue of a Cytosine Mutation in a Self-Cleaving Ribozyme. Science 286:123-126
-
(1999)
Science
, vol.286
, pp. 123-126
-
-
Perrotta, A.T.1
Shih, I.-H.2
Been, M.D.3
-
53
-
-
0026537996
-
Replication and evolution of viroid-like pathogens
-
Robertson HD (1992) Replication and evolution of viroid-like pathogens. Curr Top Microbiol Immunol 176:213-219
-
(1992)
Curr Top Microbiol Immunol
, vol.176
, pp. 213-219
-
-
Robertson, H.D.1
-
54
-
-
0025082875
-
Self-cleavage of hepatitis delta virus genomic strand RNA is enhanced under partially denaturing conditions
-
Rosenstein SP, Been MD (1990) Self-cleavage of hepatitis delta virus genomic strand RNA is enhanced under partially denaturing conditions. Biochemistry 29:8011-8016
-
(1990)
Biochemistry
, vol.29
, pp. 8011-8016
-
-
Rosenstein, S.P.1
Been, M.D.2
-
55
-
-
0026095948
-
Evidence that genomic and antigenomic RNA self-cleaving elements from hepatitis delta virus have similar secondary structures
-
Rosenstein SP, Been MD (1991) Evidence that genomic and antigenomic RNA self-cleaving elements from hepatitis delta virus have similar secondary structures. Nucl Acids Res 19:5409-5416
-
(1991)
Nucl Acids Res
, vol.19
, pp. 5409-5416
-
-
Rosenstein, S.P.1
Been, M.D.2
-
56
-
-
2942729627
-
Crystallization of the hairpin ribozyme: Illustrative protocols
-
Rupert PB, Ferré-D'Amaré AR (2004) Crystallization of the hairpin ribozyme: illustrative protocols. Methods Mol Biol 252:303-311
-
(2004)
Methods Mol Biol
, vol.252
, pp. 303-311
-
-
Rupert, P.B.1
Ferré-D'Amaré, A.R.2
-
57
-
-
0035848837
-
Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis
-
Rupert PB, Ferré-D'Amaré AR (2001) Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis. Nature 410:780-786
-
(2001)
Nature
, vol.410
, pp. 780-786
-
-
Rupert, P.B.1
Ferré-D'Amaré, A.R.2
-
58
-
-
0023747377
-
Antigenomic RNA of human hepatitis delta virus can undergo self-cleavage
-
Sharmeen L, Kuo MY-P, Dinter-Gottlieb G, Taylor J (1988) Antigenomic RNA of human hepatitis delta virus can undergo self-cleavage. J Virol 62:2674-2679
-
(1988)
J Virol
, vol.62
, pp. 2674-2679
-
-
Sharmeen, L.1
Kuo, M.Y.-P.2
Dinter-Gottlieb, G.3
Taylor, J.4
-
59
-
-
0032832044
-
Ribozyme cleavage of a 2′,5′- phosphodiester linkage: Mechanism and a restricted divalent metal ion requirement
-
Shih I-h, Been MD (1999) Ribozyme cleavage of a 2′,5′- phosphodiester linkage: mechanism and a restricted divalent metal ion requirement. RNA 5:1140-1148
-
(1999)
RNA
, vol.5
, pp. 1140-1148
-
-
Shih, I.-H.1
Been, M.D.2
-
60
-
-
0035801474
-
Energetic contribution of non-essential 5′ sequence to catalysis in a hepatitis delta virus ribozyme
-
Shih I-h, Been MD (2001a) Energetic contribution of non-essential 5′ sequence to catalysis in a hepatitis delta virus ribozyme. EMBO J 20:4884-4891
-
(2001)
EMBO J
, vol.20
, pp. 4884-4891
-
-
Shih, I.-H.1
Been, M.D.2
-
61
-
-
0035852640
-
Involvement of a cytosine side chain in proton transfer in the rate- determining step of ribozyme self-cleavage
-
Shih I-h, Been MD (2001b) Involvement of a cytosine side chain in proton transfer in the rate- determining step of ribozyme self-cleavage. Proc Natl Acad Sci USA 98:1489-1494
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 1489-1494
-
-
Shih, I.-H.1
Been, M.D.2
-
62
-
-
0026102040
-
Configurationally defined phosphorothioate- containing oligoribonucleotides in the study of the mechanism of cleavage of hammerhead ribozymes
-
Slim G, Gait MJ (1991) Configurationally defined phosphorothioate- containing oligoribonucleotides in the study of the mechanism of cleavage of hammerhead ribozymes. Nucl Acids Res 19:1183-1188
-
(1991)
Nucl Acids Res
, vol.19
, pp. 1183-1188
-
-
Slim, G.1
Gait, M.J.2
-
63
-
-
0032831634
-
Relationship between internucleotide linkage geometry and the stability of RNA
-
Soukup GA, Breaker RR (1999) Relationship between internucleotide linkage geometry and the stability of RNA. RNA 5:1308-1325
-
(1999)
RNA
, vol.5
, pp. 1308-1325
-
-
Soukup, G.A.1
Breaker, R.R.2
-
64
-
-
0027305803
-
Self-cleavage activity of the genomic HDV ribozyme in the presence of various divalent metal ions
-
Suh Y-A, Kumar PKR, Taira K, Nishikawa S (1993) Self-cleavage activity of the genomic HDV ribozyme in the presence of various divalent metal ions. Nucl Acids Res 21:3277-3280
-
(1993)
Nucl Acids Res
, vol.21
, pp. 3277-3280
-
-
Suh, Y.-A.1
Kumar, P.K.R.2
Taira, K.3
Nishikawa, S.4
-
65
-
-
0002070182
-
The catalytic RNAs from hepatitis delta virus: Structure, function, and application
-
Dinter-Gottlieb G, ed, Springer-Verlag, New York
-
Tanner NK (1995) The catalytic RNAs from hepatitis delta virus: structure, function, and application. Dinter-Gottlieb G. (ed) The Unique Hepatitis Delta Virus. pp 11-29. Springer-Verlag, New York
-
(1995)
The Unique Hepatitis Delta Virus
, pp. 11-29
-
-
Tanner, N.K.1
-
66
-
-
0028446537
-
A three-dimensional model of hepatitis delta virus ribozyme based on biochemical and mutational analyses
-
Tanner NK, Schaff S, Thill G, Petit-Koskas E, Crain-Denoyelle A-M, Westhof E (1994) A three-dimensional model of hepatitis delta virus ribozyme based on biochemical and mutational analyses. Curr Biol 4:488-497
-
(1994)
Curr Biol
, vol.4
, pp. 488-497
-
-
Tanner, N.K.1
Schaff, S.2
Thill, G.3
Petit-Koskas, E.4
Crain-Denoyelle, A.-M.5
Westhof, E.6
-
67
-
-
0027222970
-
Structural and sequence elements required for the self-cleaving activity of the hepatitis delta virus ribozyme
-
Thill G, Vasseur M, Tanner NK (1993) Structural and sequence elements required for the self-cleaving activity of the hepatitis delta virus ribozyme. Biochemistry 32:4254-4262
-
(1993)
Biochemistry
, vol.32
, pp. 4254-4262
-
-
Thill, G.1
Vasseur, M.2
Tanner, N.K.3
-
68
-
-
0025335881
-
Two autolytic processing reactions of a satellite RNA proceed with inversion of configuration
-
van Tol H, Buzayan JM, Feldstein PA, Eckstein F, Bruening G (1990) Two autolytic processing reactions of a satellite RNA proceed with inversion of configuration. Nucl Acids Res 18:1971-1975
-
(1990)
Nucl Acids Res
, vol.18
, pp. 1971-1975
-
-
van Tol, H.1
Buzayan, J.M.2
Feldstein, P.A.3
Eckstein, F.4
Bruening, G.5
-
69
-
-
0030846545
-
Core-associated non-duplex sequences distinguishing the genomic and antigenomic self-cleaving RNAs of hepatitis delta virus
-
Wadkins TS, Been MD (1997) Core-associated non-duplex sequences distinguishing the genomic and antigenomic self-cleaving RNAs of hepatitis delta virus. Nucl Acids Res 25:4085-4092
-
(1997)
Nucl Acids Res
, vol.25
, pp. 4085-4092
-
-
Wadkins, T.S.1
Been, M.D.2
-
70
-
-
0036161836
-
Ribozyme activity in the genomic and antigenomic RNA strands of hepatitis delta virus
-
Wadkins TS, Been MD (2002) Ribozyme activity in the genomic and antigenomic RNA strands of hepatitis delta virus. Cell Mol Life Sci 59:112-125
-
(2002)
Cell Mol Life Sci
, vol.59
, pp. 112-125
-
-
Wadkins, T.S.1
Been, M.D.2
-
71
-
-
0033053643
-
A nested double-pseudoknot is required for self-cleavage activity of both the genomic and antigenomic HDV ribozymes
-
Wadkins TS, Perrotta AT, Ferré-D'Amaré AR, Doudna JA, Been MD (1999) A nested double-pseudoknot is required for self-cleavage activity of both the genomic and antigenomic HDV ribozymes. RNA 5:720-727
-
(1999)
RNA
, vol.5
, pp. 720-727
-
-
Wadkins, T.S.1
Perrotta, A.T.2
Ferré-D'Amaré, A.R.3
Doudna, J.A.4
Been, M.D.5
-
72
-
-
0035793217
-
A pH-sensitive RNA tertiary interaction affects self-cleavage activity of the HDV ribozymes in the absence of added divalent metal ion
-
Wadkins TS, Shih I, Perrotta AT, Been MD (2001) A pH-sensitive RNA tertiary interaction affects self-cleavage activity of the HDV ribozymes in the absence of added divalent metal ion. J Mol Biol 305:1045-1055
-
(2001)
J Mol Biol
, vol.305
, pp. 1045-1055
-
-
Wadkins, T.S.1
Shih, I.2
Perrotta, A.T.3
Been, M.D.4
-
73
-
-
0031800080
-
Global structure of four-way RNA junctions studied using fluorescence resonance energy transfer
-
Walter F, Murchie AI, Duckett DR, Lilley DM (1998) Global structure of four-way RNA junctions studied using fluorescence resonance energy transfer. RNA 4:719-728
-
(1998)
RNA
, vol.4
, pp. 719-728
-
-
Walter, F.1
Murchie, A.I.2
Duckett, D.R.3
Lilley, D.M.4
-
74
-
-
0022449061
-
Structure, sequence and expression of the hepatitis delta (δ) viral genome
-
Wang K-S, Choo Q-L, Weiner AJ, Ou J-H, Najarian RC, Thayer RM, Mullenbach GT, Denniston KJ, Gerin JL, Houghton M (1986) Structure, sequence and expression of the hepatitis delta (δ) viral genome. Nature 323:508-514
-
(1986)
Nature
, vol.323
, pp. 508-514
-
-
Wang, K.-S.1
Choo, Q.-L.2
Weiner, A.J.3
Ou, J.-H.4
Najarian, R.C.5
Thayer, R.M.6
Mullenbach, G.T.7
Denniston, K.J.8
Gerin, J.L.9
Houghton, M.10
-
75
-
-
0003463893
-
Human hepatitis delta virus RNA subfragments contain an autocleavage activity
-
Wu HN, Lin YJ, Lin FP, Makino S, Chang MF, Lai MM (1989) Human hepatitis delta virus RNA subfragments contain an autocleavage activity. Proc Nat Acad Sci USA 86:1831-1835
-
(1989)
Proc Nat Acad Sci USA
, vol.86
, pp. 1831-1835
-
-
Wu, H.N.1
Lin, Y.J.2
Lin, F.P.3
Makino, S.4
Chang, M.F.5
Lai, M.M.6
-
76
-
-
0030967825
-
Metal ions play a passive role in the hairpin ribozyme catalysed reaction
-
Young KJ, Gill F, Grasby JA (1997) Metal ions play a passive role in the hairpin ribozyme catalysed reaction. Nucl Acids Res 25:3760-3766
-
(1997)
Nucl Acids Res
, vol.25
, pp. 3760-3766
-
-
Young, K.J.1
Gill, F.2
Grasby, J.A.3
|