메뉴 건너뛰기




Volumn 5, Issue 6, 1999, Pages 720-727

A nested double pseudoknot is required for self-cleavage activity of both the genomic and antigenomic hepatitis delta virus ribozymes

Author keywords

Catalytic RNA; Hepatitis delta virus; RNA structure; Self cleaving RNA

Indexed keywords

RIBOZYME; RNA; RNA POLYMERASE;

EID: 0033053643     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838299990209     Document Type: Article
Times cited : (90)

References (38)
  • 1
    • 0029438470 scopus 로고
    • Optimal self-cleavage activity of the hepatitis delta virus RNA is dependent on a homopurine base pair in the ribozyme core
    • Been MD, Perrotta AT. 1995. Optimal self-cleavage activity of the hepatitis delta virus RNA is dependent on a homopurine base pair in the ribozyme core. RNA 1:1061-1070.
    • (1995) RNA , vol.1 , pp. 1061-1070
    • Been, M.D.1    Perrotta, A.T.2
  • 2
    • 0030803589 scopus 로고    scopus 로고
    • The self-cleaving ribozymes of hepatitis delta virus
    • Been MD, Wickham GS. 1997. The self-cleaving ribozymes of Hepatitis Delta Virus. Eur J Biochem 247:741-753.
    • (1997) Eur J Biochem , vol.247 , pp. 741-753
    • Been, M.D.1    Wickham, G.S.2
  • 4
    • 0032497521 scopus 로고    scopus 로고
    • Crystal structure of a hepatitis delta virus ribozyme
    • Ferré-D'Amaré AR, Zhou K, Doudna JA. 1998. Crystal structure of a hepatitis delta virus ribozyme. Nature 395:567-574.
    • (1998) Nature , vol.395 , pp. 567-574
    • Ferré-D'Amaré, A.R.1    Zhou, K.2    Doudna, J.A.3
  • 5
    • 0029870404 scopus 로고    scopus 로고
    • A pseudoknot ribozyme structure is active in vivo and required for hepatitis delta virus RNA replication
    • Jeng K-S, Daniel A, Lai MMC. 1996. A pseudoknot ribozyme structure is active in vivo and required for hepatitis delta virus RNA replication. J Virol 70:2403-2410.
    • (1996) J Virol , vol.70 , pp. 2403-2410
    • Jeng, K.-S.1    Daniel, A.2    Lai, M.M.C.3
  • 8
    • 0027386658 scopus 로고
    • Point and compensation mutations to evaluate essential stem structures of genomic HDV ribozyme
    • Kumar PKR, Suh Y-A, Taira K, Nishikawa S. 1993. Point and compensation mutations to evaluate essential stem structures of genomic HDV ribozyme. FASEB J 7:124-129.
    • (1993) FASEB J , vol.7 , pp. 124-129
    • Kumar, P.K.R.1    Suh, Y.-A.2    Taira, K.3    Nishikawa, S.4
  • 9
    • 0027979491 scopus 로고
    • Chemical probing studies of variants of the genomic hepatitis delta virus ribozyme by primer extension analysis
    • Kumar PKR, Taira K, Nishikawa S. 1994. Chemical probing studies of variants of the genomic hepatitis delta virus ribozyme by primer extension analysis. Biochemistry 33:583-592.
    • (1994) Biochemistry , vol.33 , pp. 583-592
    • Kumar, P.K.R.1    Taira, K.2    Nishikawa, S.3
  • 10
    • 0023613953 scopus 로고
    • Rapid and efficient site-specific mutagenesis without phenotypic selection
    • Kunkel TA, Roberts JD, Zakour RA. 1987. Rapid and efficient site-specific mutagenesis without phenotypic selection. Methods Enzymol 154:367-382.
    • (1987) Methods Enzymol , vol.154 , pp. 367-382
    • Kunkel, T.A.1    Roberts, J.D.2    Zakour, R.A.3
  • 11
    • 0024209351 scopus 로고
    • Characterization of self-cleaving RNA sequences on the genome and antigenome of human hepatitis delta virus
    • Kuo MY-P, Sharmeen L, Dinter-Gottlieb G, Taylor J. 1988. Characterization of self-cleaving RNA sequences on the genome and antigenome of human hepatitis delta virus. J Virol 62:4439-4444.
    • (1988) J Virol , vol.62 , pp. 4439-4444
    • Kuo, M.-P.1    Sharmeen, L.2    Dinter-Gottlieb, G.3    Taylor, J.4
  • 12
    • 0029071510 scopus 로고
    • The molecular biology of hepatitis delta virus
    • Lai MMC. 1995. The molecular biology of hepatitis delta virus. Annu Rev Biochem 64:259-286.
    • (1995) Annu Rev Biochem , vol.64 , pp. 259-286
    • Lai, M.M.C.1
  • 13
    • 0027535112 scopus 로고
    • Replication of hepatitis delta virus RNA: Effect of mutations of the autocatalytic cleavage sites
    • MacNaughton TB, Wang Y-J, Lai MMC. 1993. Replication of hepatitis delta virus RNA: Effect of mutations of the autocatalytic cleavage sites. J Virol 67:2228-2234.
    • (1993) J Virol , vol.67 , pp. 2228-2234
    • MacNaughton, T.B.1    Wang, Y.-J.2    Lai, M.M.C.3
  • 15
    • 0025597973 scopus 로고
    • The self-cleaving domain from the genomic RNA of hepatitis delta virus: Sequence requirements and the effects of denaturant
    • Perrotta AT, Been MD. 1990. The self-cleaving domain from the genomic RNA of hepatitis delta virus: Sequence requirements and the effects of denaturant. Nucleic Acids Res 18:6821-6827.
    • (1990) Nucleic Acids Res , vol.18 , pp. 6821-6827
    • Perrotta, A.T.1    Been, M.D.2
  • 16
    • 0025882069 scopus 로고
    • A pseudoknot-like structure required for efficient self-cleavage of hepatitis delta virus RNA
    • Perrotta AT, Been MD. 1991. A pseudoknot-like structure required for efficient self-cleavage of hepatitis delta virus RNA. Nature 350:434-436.
    • (1991) Nature , vol.350 , pp. 434-436
    • Perrotta, A.T.1    Been, M.D.2
  • 17
    • 0026594927 scopus 로고
    • Cleavage of oligoribonucleotides by a ribozyme derived from the hepatitis δ virus RNA sequence
    • Perrotta AT, Been MD. 1992. Cleavage of oligoribonucleotides by a ribozyme derived from the hepatitis δ virus RNA sequence. Biochemistry 31:16-21.
    • (1992) Biochemistry , vol.31 , pp. 16-21
    • Perrotta, A.T.1    Been, M.D.2
  • 18
    • 0029964591 scopus 로고    scopus 로고
    • Core sequences and a cleavage site wobble pair required for HDV antigenomic ribozyme self-cleavage
    • Perrotta AT, Been MD. 1996. Core sequences and a cleavage site wobble pair required for HDV antigenomic ribozyme self-cleavage. Nucleic Acids Res 24:1314-1321.
    • (1996) Nucleic Acids Res , vol.24 , pp. 1314-1321
    • Perrotta, A.T.1    Been, M.D.2
  • 19
    • 0032486091 scopus 로고    scopus 로고
    • A toggle duplex in hepatitis delta virus self-cleaving RNA that stabilizes an inactive and a salt-dependent pro-active ribozyme conformation
    • Perrotta AT, Been MD. 1998. A toggle duplex in Hepatitis Delta Virus self-cleaving RNA that stabilizes an inactive and a salt-dependent pro-active ribozyme conformation. J Mol Biol 279:361-373.
    • (1998) J Mol Biol , vol.279 , pp. 361-373
    • Perrotta, A.T.1    Been, M.D.2
  • 20
    • 0025351085 scopus 로고
    • Pseudoknots: A new motif in the RNA game
    • Pleij CWA. 1990. Pseudoknots: A new motif in the RNA game. Trends Biochem Sci 15:143-147.
    • (1990) Trends Biochem Sci , vol.15 , pp. 143-147
    • Pleij, C.W.A.1
  • 21
    • 0022423219 scopus 로고
    • A new principle of RNA folding based on pseudoknotting
    • Pleij CWA, Rietveld K, Bosch L. 1985. A new principle of RNA folding based on pseudoknotting. Nucleic Acids Res 13:1717-1731.
    • (1985) Nucleic Acids Res , vol.13 , pp. 1717-1731
    • Pleij, C.W.A.1    Rietveld, K.2    Bosch, L.3
  • 22
    • 0028063567 scopus 로고
    • Three-dimensional structure of a hammerhead ribozyme
    • Pley HW, Flaherty KM, McKay DB. 1994. Three-dimensional structure of a hammerhead ribozyme. Nature 372: 68-74.
    • (1994) Nature , vol.372 , pp. 68-74
    • Pley, H.W.1    Flaherty, K.M.2    McKay, D.B.3
  • 23
    • 0020959879 scopus 로고
    • The delta agent
    • Rizzetto M. 1983. The delta agent. Hepatology 3:729-737.
    • (1983) Hepatology , vol.3 , pp. 729-737
    • Rizzetto, M.1
  • 24
    • 0025082875 scopus 로고
    • Self-cleavage of hepatitis delta virus genomic strand RNA is enhanced under partially denaturing conditions
    • Rosenstein SP, Been MD. 1990. Self-cleavage of hepatitis delta virus genomic strand RNA is enhanced under partially denaturing conditions. Biochemistry 29:8011-8016.
    • (1990) Biochemistry , vol.29 , pp. 8011-8016
    • Rosenstein, S.P.1    Been, M.D.2
  • 25
    • 0026095948 scopus 로고
    • Evidence that genomic and anti-genomic RNA self-cleaving elements from hepatitis delta virus have similar secondary structures
    • Rosenstein SP, Been MD. 1991. Evidence that genomic and anti-genomic RNA self-cleaving elements from hepatitis delta virus have similar secondary structures. Nucleic Acids Res 19:5409-5416.
    • (1991) Nucleic Acids Res , vol.19 , pp. 5409-5416
    • Rosenstein, S.P.1    Been, M.D.2
  • 26
    • 0029781027 scopus 로고    scopus 로고
    • Hepatitis delta virus ribozymes fold to generate a solvent-inaccessible core with essential nucleotides near the cleavage-site phosphate
    • Rosenstein SR, Been MD. 1996. Hepatitis delta virus ribozymes fold to generate a solvent-inaccessible core with essential nucleotides near the cleavage-site phosphate. Biochemistry 35:11403-11413.
    • (1996) Biochemistry , vol.35 , pp. 11403-11413
    • Rosenstein, S.R.1    Been, M.D.2
  • 27
    • 0029073091 scopus 로고
    • The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
    • Scott WG, Finch JT, Klug A. 1995. The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage. Cell 81:991-1002.
    • (1995) Cell , vol.81 , pp. 991-1002
    • Scott, W.G.1    Finch, J.T.2    Klug, A.3
  • 28
    • 0023747377 scopus 로고
    • Antigenomic RNA of human hepatitis delta virus can undergo self-cleavage
    • Sharmeen L, Kuo MY-P, Dinter-Gottlieb G, Taylor J. 1988. Antigenomic RNA of human hepatitis delta virus can undergo self-cleavage. J Virol 62:2674-2679.
    • (1988) J Virol , vol.62 , pp. 2674-2679
    • Sharmeen, L.1    Kuo, M.-P.2    Dinter-Gottlieb, G.3    Taylor, J.4
  • 29
    • 0026035592 scopus 로고
    • Antigenomic hepatitis delta virus ribozymes self-cleave in 18 M formamide
    • Smith JB, Dinter-Gottlieb G. 1991. Antigenomic hepatitis delta virus ribozymes self-cleave in 18 M formamide. Nucleic Acids Res 19:1285-1289.
    • (1991) Nucleic Acids Res , vol.19 , pp. 1285-1289
    • Smith, J.B.1    Dinter-Gottlieb, G.2
  • 30
    • 0026651086 scopus 로고
    • Small catalytic RNAs
    • Symons RH. 1992. Small catalytic RNAs. Ann Rev Biochem 61:641-671.
    • (1992) Ann Rev Biochem , vol.61 , pp. 641-671
    • Symons, R.H.1
  • 31
    • 0028446537 scopus 로고
    • A three-dimensional model of hepatitis delta virus ribozyme based on biochemical and mutational analyses
    • Tanner NK, Schaff S, Thill G, Petit-Koskas E, Crain-Denoyelle A-M, Westhof E. 1994. A three-dimensional model of hepatitis delta virus ribozyme based on biochemical and mutational analyses. Curr Biol 4:488-497.
    • (1994) Curr Biol , vol.4 , pp. 488-497
    • Tanner, N.K.1    Schaff, S.2    Thill, G.3    Petit-Koskas, E.4    Crain-Denoyelle, A.-M.5    Westhof, E.6
  • 32
    • 0027222970 scopus 로고
    • Structural and sequence elements required for the self-cleaving activity of the hepatitis delta virus ribozyme
    • Thill G, Vasseur M, Tanner NK. 1993. Structural and sequence elements required for the self-cleaving activity of the hepatitis delta virus ribozyme. Biochemistry 32:4254-4262.
    • (1993) Biochemistry , vol.32 , pp. 4254-4262
    • Thill, G.1    Vasseur, M.2    Tanner, N.K.3
  • 33
    • 0032549735 scopus 로고    scopus 로고
    • Kinetic intermediates trapped by native interactions in RNA folding
    • Treiber DK, Rook MS, Zarrinkar PP, Williamson JR. 1998. Kinetic intermediates trapped by native interactions in RNA folding. Science 279:1943-1946.
    • (1998) Science , vol.279 , pp. 1943-1946
    • Treiber, D.K.1    Rook, M.S.2    Zarrinkar, P.P.3    Williamson, J.R.4
  • 34
    • 0023634094 scopus 로고
    • Production of single-stranded plasmid DNA
    • Vieira J, Messing J. 1987. Production of single-stranded plasmid DNA. Methods Enzymol 153:3-11.
    • (1987) Methods Enzymol , vol.153 , pp. 3-11
    • Vieira, J.1    Messing, J.2
  • 35
    • 0030846545 scopus 로고    scopus 로고
    • Core-associated non-duplex sequences distinguishing the genomic and antigenomic self-cleaving RNAs of hepatitis delta virus
    • Wadkins TS, Been MD. 1997. Core-associated non-duplex sequences distinguishing the genomic and antigenomic self-cleaving RNAs of hepatitis delta virus. Nucleic Acids Res 25:4085-4092.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4085-4092
    • Wadkins, T.S.1    Been, M.D.2
  • 37
    • 0344188027 scopus 로고    scopus 로고
    • Molecular modeling of a G•G basepair in the antigenomic HDV ribozyme
    • Wickham GS, Shih I-h, Been MD. 1997. Molecular modeling of a G•G basepair in the antigenomic HDV ribozyme. Nucleic Acids Symp Ser 36:99-101.
    • (1997) Nucleic Acids Symp Ser , vol.36 , pp. 99-101
    • Wickham, G.S.1    Shih, I.-H.2    Been, M.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.