-
1
-
-
0021943255
-
Eukaryotic RNA polymerases
-
Sentenac A: Eukaryotic RNA polymerases. CRC Crit Rev Biochem 1985, 18:31-90.
-
(1985)
CRC Crit Rev Biochem
, vol.18
, pp. 31-90
-
-
Sentenac, A.1
-
2
-
-
0000236335
-
Regulation of transcription by RNA polymerase I
-
Edited by McKnight S, Yamamoto K. Cold Spring Harbor; Cold Spring Harbor Laboratory Press
-
Reeder R: Regulation of transcription by RNA polymerase I. In Transcription Regulation. Edited by McKnight S, Yamamoto K. Cold Spring Harbor; Cold Spring Harbor Laboratory Press; 1992:315-348.
-
(1992)
Transcription Regulation
, pp. 315-348
-
-
Reeder, R.1
-
3
-
-
0025950347
-
The complexities of eukaryotic transcription initiation: Regulation of preinitiation complex assembly
-
Roeder RG: The complexities of eukaryotic transcription initiation: regulation of preinitiation complex assembly. Trends Biochem Sci 1991, 16:402-408.
-
(1991)
Trends Biochem Sci
, vol.16
, pp. 402-408
-
-
Roeder, R.G.1
-
4
-
-
0029038933
-
News on initiation and elongation of transcription by RNA polymerase II
-
Moldonado E, Reinberg D: News on initiation and elongation of transcription by RNA polymerase II. Curr Opin Cell Biol 1995, 7:352-361.
-
(1995)
Curr Opin Cell Biol
, vol.7
, pp. 352-361
-
-
Moldonado, E.1
Reinberg, D.2
-
5
-
-
0026248631
-
RNA polymerase III (C) and its transcription factors
-
Gabrielson O, Sentenac A: RNA polymerase III (C) and its transcription factors. Trends Biochem Sci 1991, 16:412-416.
-
(1991)
Trends Biochem Sci
, vol.16
, pp. 412-416
-
-
Gabrielson, O.1
Sentenac, A.2
-
6
-
-
0028056035
-
2.1 A resolution refined structure of a TATa box-binding protein (TBP)
-
Nikolov D, Burley SK: 2.1 A resolution refined structure of a TATA box-binding protein (TBP). Nature Struct Biol 1994, 1:621-637. The authors report the first high-resolution refinement of the structure of a TATA box binding protein and review its role in transcription initiation by all three RNA polymerases.
-
(1994)
Nature Struct Biol
, vol.1
, pp. 621-637
-
-
Nikolov, D.1
Burley, S.K.2
-
7
-
-
0019333274
-
Multiple factors required for accurate initiation of transcription by purified RNA polymerase II
-
Matsui T, Segall J, Weil P, Roeder R: Multiple factors required for accurate initiation of transcription by purified RNA polymerase II. J Biol Chem 1980, 255:11992-11996.
-
(1980)
J Biol Chem
, vol.255
, pp. 11992-11996
-
-
Matsui, T.1
Segall, J.2
Weil, P.3
Roeder, R.4
-
8
-
-
0027354762
-
Initiation of transcription by RNA polymerase II: A multi-step process
-
Zawel L, Reinberg D: Initiation of transcription by RNA polymerase II: a multi-step process. Prog Nucleic Acids Res Mol Biol 1993, 44:67-108.
-
(1993)
Prog Nucleic Acids Res Mol Biol
, vol.44
, pp. 67-108
-
-
Zawel, L.1
Reinberg, D.2
-
9
-
-
0024977414
-
Five intermediate complexes in transcription initiation by RNA polymerase II
-
Buratowski S, Hahn S, Guarente L, Sharp PA: Five intermediate complexes in transcription initiation by RNA polymerase II. Cell 1989, 56:549-561.
-
(1989)
Cell
, vol.56
, pp. 549-561
-
-
Buratowski, S.1
Hahn, S.2
Guarente, L.3
Sharp, P.A.4
-
10
-
-
0027168221
-
DNA topology and a minimal set of basal factors for transcription by RNA polymerase II
-
Parvin J, Sharp P: DNA topology and a minimal set of basal factors for transcription by RNA polymerase II. Cell 1993, 73:533-540.
-
(1993)
Cell
, vol.73
, pp. 533-540
-
-
Parvin, J.1
Sharp, P.2
-
11
-
-
0029074137
-
Recycling of the general transcription factors during RNA polymerase II transcription
-
Zawet L, Kumar K, Reinberg D: Recycling of the general transcription factors during RNA polymerase II transcription. Genes Dev 1995, 9:1479-1490.
-
(1995)
Genes Dev
, vol.9
, pp. 1479-1490
-
-
Zawet, L.1
Kumar, K.2
Reinberg, D.3
-
12
-
-
0027974851
-
1.9 Å resolution refined structure of TBP recognizing the minor groove of TATAAAAG
-
Kim JL, Burley SK: 1.9 Å resolution refined structure of TBP recognizing the minor groove of TATAAAAG. Nature Struct Biol 1994, 1:638-653. The authors report the first high-resolution refinement of the structure of a TBP-DNA complex and review the DNA-binding properties of TBP in RNA polymerase II transcription initiation.
-
(1994)
Nature Struct Biol
, vol.1
, pp. 638-653
-
-
Kim, J.L.1
Burley, S.K.2
-
13
-
-
0028904453
-
The RNA polymerase II holoenzyme and its implications for gene regulation
-
Koleske A, Young R: The RNA polymerase II holoenzyme and its implications for gene regulation. Trends Biochem Sci 1995, 20:113-116.
-
(1995)
Trends Biochem Sci
, vol.20
, pp. 113-116
-
-
Koleske, A.1
Young, R.2
-
14
-
-
0028212908
-
The role of activators in assembly of RNA polymerase II transcription complexes
-
Hori R, Carey M: The role of activators in assembly of RNA polymerase II transcription complexes. Curr Opin Genet Dev 1994, 4:236-244. A useful review of the roles played by activators in eukaryotic pol II transcription.
-
(1994)
Curr Opin Genet Dev
, vol.4
, pp. 236-244
-
-
Hori, R.1
Carey, M.2
-
15
-
-
0027268306
-
TBP, a universal transcription factor?
-
Hernandez N: TBP, a universal transcription factor? Genes Dev 1993, 7:1291-1308.
-
(1993)
Genes Dev
, vol.7
, pp. 1291-1308
-
-
Hernandez, N.1
-
16
-
-
0026531863
-
The TATA-binding protein and associated factors are integral components of RNA polymerase I transcription factor, SL1
-
Comai L, Tanese N, Tjian R: The TATA-binding protein and associated factors are integral components of RNA polymerase I transcription factor, SL1. Cell 1992, 68:965-976.
-
(1992)
Cell
, vol.68
, pp. 965-976
-
-
Comai, L.1
Tanese, N.2
Tjian, R.3
-
17
-
-
0029129653
-
Structure and function of a human transcription factor TFIIIB subunit that is evolutionary conserved and contains both TFIIB and high-mobility-group protein 2 domains
-
Wang Z, Roeder R: Structure and function of a human transcription factor TFIIIB subunit that is evolutionary conserved and contains both TFIIB and high-mobility-group protein 2 domains. Proc Natl Acad Sci USA 1995, 92:7026-7030.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 7026-7030
-
-
Wang, Z.1
Roeder, R.2
-
18
-
-
0026491908
-
Crystal structure of TFIID TATA-box binding protein
-
Nikolov DB, Hu S-H, Lin J, Gasch A, Hoffmann A, Horikoshi M, Chua N-H, Roeder RG, Burley SK: Crystal structure of TFIID TATA-box binding protein. Nature 1992, 360:40-46.
-
(1992)
Nature
, vol.360
, pp. 40-46
-
-
Nikolov, D.B.1
Hu, S.-H.2
Lin, J.3
Gasch, A.4
Hoffmann, A.5
Horikoshi, M.6
Chua, N.-H.7
Roeder, R.G.8
Burley, S.K.9
-
19
-
-
0027250617
-
Crystal structure of yeast TATA-binding protein and a model for interaction with DNA
-
Chasman D, Flaherty K, Sharp P, Kornberg R: Crystal structure of yeast TATA-binding protein and a model for interaction with DNA. Proc Natl Acad Sci USA 1993, 90:8174-8178.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 8174-8178
-
-
Chasman, D.1
Flaherty, K.2
Sharp, P.3
Kornberg, R.4
-
20
-
-
0027483012
-
Co-crystal structure of TBP recognizing the minor groove of a TATa element
-
Kim JL, Nikolov DB, Burley SK: Co-crystal structure of TBP recognizing the minor groove of a TATA element Nature 1993, 365:520-527.
-
(1993)
Nature
, vol.365
, pp. 520-527
-
-
Kim, J.L.1
Nikolov, D.B.2
Burley, S.K.3
-
21
-
-
0027504913
-
Crystal structure of a yeast TBP/TATA-box complex
-
Kim Y, Geiger JH, Hahn S, Sigler PB: Crystal structure of a yeast TBP/TATA-box complex. Nature 1993, 365:512-520.
-
(1993)
Nature
, vol.365
, pp. 512-520
-
-
Kim, Y.1
Geiger, J.H.2
Hahn, S.3
Sigler, P.B.4
-
22
-
-
0028978670
-
Crystal structure of a TFIIB-TBP-TATa element ternary complex
-
Nikolov D, Chen H, Halay E, Usheva A, Hisatake K, Lee D, Roeder R, Burley SK: Crystal structure of a TFIIB-TBP-TATA element ternary complex Nature 1995, 377:119-128. The authors report the structure of a core TFIIB-TBP-TATA element ternary complex at 2.7 A resolution.
-
(1995)
Nature
, vol.377
, pp. 119-128
-
-
Nikolov, D.1
Chen, H.2
Halay, E.3
Usheva, A.4
Hisatake, K.5
Lee, D.6
Roeder, R.7
Burley, S.K.8
-
23
-
-
0028999219
-
Three-dimensional structure of the bifunctional protein PCD/DCoH, a cytoplasmic enzyme interacting with transcription factor HNF1
-
Ficner R, Sauer U, Stier G, Suck D: Three-dimensional structure of the bifunctional protein PCD/DCoH, a cytoplasmic enzyme interacting with transcription factor HNF1. EMBO J 1995, 14:2034-2042. This paper (together with [24•]) describes the X-ray structure of PCD/DCoH, another molecular saddle and the first transcriptional coactivator.
-
(1995)
EMBO J
, vol.14
, pp. 2034-2042
-
-
Ficner, R.1
Sauer, U.2
Stier, G.3
Suck, D.4
-
24
-
-
0029001623
-
Crystal structure of DCoH, a bifunctional, protein-binding transcriptional coactivator
-
Endrizzi J, Cronk J, Wang W, Crabtree G, Alber T: Crystal structure of DCoH, a bifunctional, protein-binding transcriptional coactivator. Science 1995, 268:556-559. This paper (togther with [23•]) describes the X-ray structure of PCD/DCoH, another molecular saddle and the first transcriptional coactivator.
-
(1995)
Science
, vol.268
, pp. 556-559
-
-
Endrizzi, J.1
Cronk, J.2
Wang, W.3
Crabtree, G.4
Alber, T.5
-
25
-
-
0029013642
-
Dimerization of TATA binding protein
-
Coleman R, Taggart A, Benjamin L, Pugh B: Dimerization of TATA binding protein. J Biol Chem 1995, 270:13842-13849.
-
(1995)
J Biol Chem
, vol.270
, pp. 13842-13849
-
-
Coleman, R.1
Taggart, A.2
Benjamin, L.3
Pugh, B.4
-
26
-
-
0028365899
-
TBP-DNA interactions in the minor groove discriminate between A:T and T:A base pairs
-
Wong J, Bateman E: TBP-DNA interactions in the minor groove discriminate between A:T and T:A base pairs. Nucleic Acids Res 1994, 22:1890-1896.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 1890-1896
-
-
Wong, J.1
Bateman, E.2
-
27
-
-
0029127570
-
DNA bending is an important component of site-specific recognition by the TATA binding protein
-
Starr D, Hoopes B, Hawley D: DNA bending is an important component of site-specific recognition by the TATA binding protein. J Mol Biol 1995, 250:434-446. The authors describe the results of the first quantitative study of DNA bending by a TBP.
-
(1995)
J Mol Biol
, vol.250
, pp. 434-446
-
-
Starr, D.1
Hoopes, B.2
Hawley, D.3
-
28
-
-
0028919503
-
Pre-bending of a promoter sequence enhances affinity for the TATA-binding factor
-
Parvin J, McCormick R, Sharp P, Fisher D: Pre-bending of a promoter sequence enhances affinity for the TATA-binding factor. Nature 1995, 273:724-727. This paper describes the effects of prebending the TATA element on TBP affinity, which may be important in vivo when histones and other DNA-deforming proteins are also bound to the core promoter.
-
(1995)
Nature
, vol.273
, pp. 724-727
-
-
Parvin, J.1
McCormick, R.2
Sharp, P.3
Fisher, D.4
-
29
-
-
0026665954
-
Kinetic analysis of yeast TFIID-TATa box complex formation suggests a multi-step pathway
-
Hoopes B, LeBlanc J, Hawley D: Kinetic analysis of yeast TFIID-TATA box complex formation suggests a multi-step pathway. J Biol Chem 1992, 267:11539-11546.
-
(1992)
J Biol Chem
, vol.267
, pp. 11539-11546
-
-
Hoopes, B.1
LeBlanc, J.2
Hawley, D.3
-
30
-
-
0029008807
-
Yeast TATA binding protein interaction with DNA: Fluorescence determination of oligomeric state, equilibrium binding, on-rate, and dissociation kinetics
-
Perez-Howard G, Weil P, Beechem J: Yeast TATA binding protein interaction with DNA: fluorescence determination of oligomeric state, equilibrium binding, on-rate, and dissociation kinetics. Biochemistry 1995, 34:8005-8017.
-
(1995)
Biochemistry
, vol.34
, pp. 8005-8017
-
-
Perez-Howard, G.1
Weil, P.2
Beechem, J.3
-
31
-
-
0029014933
-
Evidence for functional binding and stable sliding of the TATA binding protein on nonspecific DNA
-
Coleman R, Pugh B: Evidence for functional binding and stable sliding of the TATA binding protein on nonspecific DNA. J Biol Chem 1995, 270:13850-13859.
-
(1995)
J Biol Chem
, vol.270
, pp. 13850-13859
-
-
Coleman, R.1
Pugh, B.2
-
32
-
-
0029328528
-
TBP unwinding of the TATa box induces a specific downstream unwinding site that is targeted by pluramycin
-
Sun D, Hurley L: TBP unwinding of the TATA box induces a specific downstream unwinding site that is targeted by pluramycin. Chem Biol 1995, 2:457-469. This paper provides the first evidence that TBP transiently deforms the structure of the DNA beyond the confines of the TATA element during TBP-DNA complex assembly.
-
(1995)
Chem Biol
, vol.2
, pp. 457-469
-
-
Sun, D.1
Hurley, L.2
-
33
-
-
0029075461
-
Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex
-
Werner M, Huth J, Gronenborn A, Clore G: Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex. Cell 1995, 81:705-714. This paper (together with [34•]) describes NMR structures of complexes between HMG proteins and DNA, revealing minor-groove recognition via DNA deformation.
-
(1995)
Cell
, vol.81
, pp. 705-714
-
-
Werner, M.1
Huth, J.2
Gronenborn, A.3
Clore, G.4
-
34
-
-
0029131298
-
Structural basis for DNA bending by the architectural transcription factor LEF-1
-
Love J, Li X,1 Case D, Giese K, Crosschedl R, Wright P: Structural basis for DNA bending by the architectural transcription factor LEF-1. Nature 1995, 376:791-795. This paper (together with [33•]) describes NMR structures of complexes between HMG proteins and DNA, revealing minor-groove recognition via DNA deformation.
-
(1995)
Nature
, vol.376
, pp. 791-795
-
-
Love, J.1
Li, X.2
Case, D.3
Giese, K.4
Crosschedl, R.5
Wright, P.6
-
35
-
-
0029029617
-
Mechanism of CDK activation revealed by the structure of a cyclin A-CDK2 complex
-
Jeffrey P, Russo A, Polyak K, Gibbs E, Hurwitz J, Massague J, Pavletich N: Mechanism of CDK activation revealed by the structure of a cyclin A-CDK2 complex. Nature 1995, 376:313-320.
-
(1995)
Nature
, vol.376
, pp. 313-320
-
-
Jeffrey, P.1
Russo, A.2
Polyak, K.3
Gibbs, E.4
Hurwitz, J.5
Massague, J.6
Pavletich, N.7
-
36
-
-
0029120954
-
Solution structure of the C-terminal core domain of human TFIIB: Similarity to cyclin a and interaction with TATA-binding protein
-
Bagby S, Kim S, Maldonado E, Tong K, Reinberg D, Ikura M: Solution structure of the C-terminal core domain of human TFIIB: similarity to cyclin A and interaction with TATA-binding protein. Cell 1995, 82:857-867. The authors describe the NMR structure of core TFIIB, which is slightly different from that observed in the ternary complex with TBP and DNA reported in [22••].
-
(1995)
Cell
, vol.82
, pp. 857-867
-
-
Bagby, S.1
Kim, S.2
Maldonado, E.3
Tong, K.4
Reinberg, D.5
Ikura, M.6
-
37
-
-
0027821285
-
The cycling of RNA polymerase II during transcription
-
Zawel L, Lu H, Cisek L, Corden J, Reinberg D: The cycling of RNA polymerase II during transcription. Cold Spring Harb Symp Quant Biol 1993, 58:187-198.
-
(1993)
Cold Spring Harb Symp Quant Biol
, vol.58
, pp. 187-198
-
-
Zawel, L.1
Lu, H.2
Cisek, L.3
Corden, J.4
Reinberg, D.5
-
38
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis PJ: MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J Appl Crystallogr 1991, 24:946-950.
-
(1991)
J Appl Crystallogr
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
|