Stereochemical basis of DNA recognition by Zn fingers

Nucleic Acids Research

Volumn 22, Issue 16, 1994, Pages 3397-3405

  Suzuki, Masashi ^a   Gerstein, Mark ^a,b   Yagi, Naoto ^a,c  

^a MRC LABORATORY OF MOLECULAR BIOLOGY   (United Kingdom)

^b STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c TOHOKU UNIVERSITY SCHOOL OF MEDICINE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; DNA BASE; ZINC FINGER PROTEIN;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CRYSTAL STRUCTURE; MOLECULAR RECOGNITION; PRIORITY JOURNAL; PROTEIN DNA BINDING; STEREOCHEMISTRY;

AMINO ACID SEQUENCE; ARGININE; BINDING SITES; CRYSTALLIZATION; DNA; DNA-BINDING PROTEINS; DROSOPHILA PROTEINS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PROTEIN STRUCTURE, SECONDARY; REGULATORY SEQUENCES, NUCLEIC ACID; REPRESSOR PROTEINS; STRUCTURE-ACTIVITY RELATIONSHIP; TRANSCRIPTION FACTOR TFIIIA; TRANSCRIPTION FACTORS; ZINC FINGERS;

EID: 0027937601     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/22.16.3397     Document Type: Article

References (96)

1. Baldwin Jr, A.S., LeClair, K.P., Singh, H., and Sharp, P.A., 1990, Mol. Cell Biol. 10, 1406-1414.
2. Berg, J.M., 1992, Proc. Nad. Acad. Sci. USA 89, 11109-11110.
3. Blumberg, H., Eisen, A., Sledziewski, A., Bader, D., and Young, E.T., 1987, Nature, 328, 443-445.
4. Bossone, S.A., Asselin, C, Patel, A.J., and Marcu, K.B., 1992, Proc. Natl Acad. Sci. USA 89, 7452-7456.
5. Call, K.M., Glaser, T., Ito, C.Y., Buckler, A.J., Pelletier, J., Haber, D.A., Rose, E.A., Krai, A., Yeger, H., Lewis, W.H., Jones, C, and Housman, D.E., 1990, Cell 60, 509-520.
6. Choo, Y., and Klug, A., 1993, Nucl. Acids Res. 21, 3341-3346.
7. Christensen, J.H., Hansen, P.K., Lillelund, O., Thagersen, H.C., 1991, FEBS Letters 281, 181-184.
8. Christy, B. and Nathans, D., 1989, Proc. Nad. Acad. Sci. USA 86, 8737-8741.
9. Churchill, M.E.A., Tullius, T.D., and Klug, A., 1990, Proc. Natl. Acad. Sci. USA 87, 5528-5532.
10. Delwel, R., Funabaki, T., Jreider, B.L., Morishita, K., and Me, J.N., 1993, Mol. Cell Biol. 13, 4291-4300.
11. Desjarlais, J.R., and Berg, J.M., 1992, Proteins 12, 101-104.
12. Desjarlais, J.R., and Berg, J.M., 1993, Proc. Nad. Acad. Sci. USA 90, 2256-2260.
13. Ebright, R.H., Cossart, P., Gicquel-Sanzey, B., and Beckwith, J., 1984, Proc. Natl. Acad. Sci. USA, 81, 7274-7278.
14. Fairall, L., and Rhodes, D., 1992, Nucleic Acids Res. 20, 4727-4731.
15. Fairall, L., Harrison, S.D., Travers, A.A. and Rhodes, D., 1992, J.Mol. Biol 226, 349-366.
16. Fairall, L., Rhodes, D., and Klug, A., 1986, J. Mol. Biol. 192, 577-591.
17. Fairall, L., Schwabe, J.W.R., Chapman, L., Finch, J., and Rhodes, D., 1993, Nature 366, 483-487.
18. Fan, C.-M., and Maniatis, T., 1990, Genes Develop. 4, 29-42.
19. Gibson, T.J., Postma, J.P., Brown, R.S., and Argos, P., 1988, Protein Engineering 2, 209-218.
20. Gorgos, J.A., Hsu, T., Bolton, J., and Kafatos, F.C., 1992, Science 257, 1951-1955.
21. Hansen, P.K., Christensen, J.H., Nyborg, J., Lillelund, O., and Thagersen, H.C., 1993, J. Mol. Biol. 233, 191-202.
22. Hartshorne, T.A., Blumberg, H., and Young, E.T., 1986, Nature 320, 283-287.
23. Hayes, J., and Tullius, T.D., 1992, J. Mol. Biol. 227, 407-417.
24. Henseling, U., Schnidt, W., Scholer, H.R., Grass, P., and Hatzopoulos, A.K., 1990, Mol. Cell Biol. 10, 4100-4109.
25. Jacobs, G.H., 1992, EMBO J. 11, 4507-4517.
26. Kasai, Y., Nambu, J.R., Lieberman, P.M., and Crews, S.T., 1992, Proc. Natl. Acad. Sci. USA 89, 3414-3418.
27. Keller, A., and Maniatis, T., 1991, Genes Develop. 5, 868-879.
28. Keller, A., and Maniatis, T., 1992, Mol. Cell Biol. 12, 1940-1949.
29. Kinzler, K.W., and Vogelstein, B., 1990, Mol. Cell Biol. 10, 634-642.
30. Klevit, R.E., 1991, Science 253, 1367-1393.
31. Klevit, R.E., Herriot, L.R., and Horvath, S.J., 1990, Proteins 7, 215-226.
32. Kochoyan, M., Keutmann, H.T., and Weiss, M.A., 1991, Biochemistry 30, 7063-7072.
33. Kriwacki, R.W., Schultz, S.C., Steitz, T.A., and Caradonna, J.P., 1992, Proc. Nad. Acad. Sci. USA 89, 9759-9763.
34. Lee, M.S., Gippert, G.P., Soman, K.V., Case, D.A., and Wright, P.E., 1989, Science 245, 635-637.
35. Lemaire, P., Vesque, C, Schmitt, J., Stunnenberg, H., Frank, R., and Charnay, P., 1990, Mol. Cell Biol. 10, 3456-3467.
36. Letovsky, J., and Dynan, W.S., 1988, Nucleic Acids Res. 17, 2639-2653.
37. Liao, X., Clemens, K.R., Tennant, L., Wright, P.E., and Gottesfeld, J.M., 1992, J. Mol. Biol. 223, 857-871.
38. Lipkin, S.M., Naar, A.M., Kalla, K.A., Sack, R.A., and Rosenfeld, M.G., 1993, Genes Develop 7, 1674-1687.
39. Madden, S.L., Cook, D.M., Morris, J.F., Gashler, A., Sukhatme, V.P., and Rauscher, F.J., 1991, Science 253, 1550-1553.
40. Maekawa, T., Sakura, H., Sudo, T., and Ishi, S., 1989, J. Biol. Chem. 264, 14591-14593.
41. Miller, I.J., and Bieker, J. J., 1993, Mol. Cell Biol. 13, 2776-2786.
42. Miller, J., McLachlan, A.D., and Klug, A., 1985, EMBO J. 4, 1609-1614.
43. Mitchelmore, C, Traboni, C, and Cortese, R., 1990, Nucl. Acids Res. 19, 141-147.
44. Moberg, K.H., Logan, T.J., Tyndall, W.A., and Hall, D.J., 1992, Oncogene 7, 411-421.
45. Morishita, K., Parker, D.S., Mucenski, M.L., Jenkins, N.A., Copeland, N.G., and Me, J.N., 1988, CeU 54, 831-840.
46. Moses, K., Ellis, M.C., and Rubin, G.M., 1989, Nature 340, 531-536.
47. Moses, K., and Rubin, G.M., 1991, Genes Develop 5, 583-593.
48. Nagai, K., Nakaseko, Y., Nasmyth, k., and Rhodes, D., 1988, Nature 332, 284-286.
49. Nakamura, T., Donovan, D.M., Hamada, K., Norman, C.M.S.B., Flanagan, J.R., Ozato, K., Westphal, H., and Piaugorsky, J., 1990, Mol. Cell Biol. 10, 3700-3708.
50. Nardelli, J., Gibson, T.J., Vesque, C, and Charnsy, P., 1991, Nature 349, 175-178.
51. Nardelli, J., Gibson, T.J., Vesque, C, and Charnsy, P., 1992, Nucleic Acids Res. 20, 4137-4144.
52. Natesan, S. and Gilman, M.Z., 1993, Genes and Develop. 7, 2497-2509.
53. Nehrin, J.O., and Ronne, H., 1990, EMBO J. 9, 2891-2898.
54. Nehrii U.O., Carlberg, M., and Ronne, H., 1991, EMBO J. 10, 3373-3377.
55. Nguyen, H.Q., Hoffinan-Lieberman, B., and Liebermann, D.A., 1993, Cell 197-209.
56. Neuhaus, D., Nakaseko, Y., Schwabe, J.W.R., and Hug, A., 1992, J. Mol., Biol. 228, 637-651.
57. Omichinski, J.G., Clore, M., Appella, E., Sakaguchi, K., and Gronenbom, A.M., 1990, Biochemistry 29, 9324-9334.
58. Omichinski, J.G., Clore, M., Robien, M., Sakaguchi, K., Appella, E., and Gronenbom, A.M., 1992, Biochemistry 31, 3907-3917.
59. Pankratz, M.J., Hoch, M., Seifert, E., and Jackie, H., 1989, Nature 341, 337-339
60. Paraga, G., Horvath, S., Hood, L., Young, E.T., and Klevit, R.E., 1990, Proc. Natl. Acad. Sci. USA 87, 137-141.
61. Parkhurst, S.M., Harrison, D.A., Remington, M.P., Spana, C, Kelley, R.L., Coyne, R.S., and Corces, V.G., 1988, Genes Develop. 2, 1205-1215.
62. Pavlstkh, X.P., and Pabo, CO., 1991, Scieccs 252, 809-817.
63. Pavletich, N.P., and Pabo, CO., 1993, Science 261, 1701-1707.
64. Payre, F., and Vincent, A., 1991, EMBO J. 10, 2533-2541.
65. Pelletier, J., Bruening, W., Kashtan, C.E., Mauer, S.M., Manivel, J.C., Striegel, J.E., Houghton, D.C., Junien, C, Habib, R., Fouser, L., Fine, R.N., Silverman, B.L., Haber, D.A., and Housman, D., 1991, Cell 67, 437-447.
66. Perkins, A.S., Fishel, R., Jenkins, N.A., and Copeland, N.G., 1991, Mol. Cell Biol. 11, 2665-2674.
67. Pyre, J.J., Moberg, K.H., and Hall, D.J., 1992, Biochemistry 31, 4102-4110.
68. Rauscher, F.J., Morris, J.F., Tournay, O.E., Cook, D.M., and Curran, T., 1990, Science 250, 1259-1262.
69. Ron, D., Brasier, A.R., and Habener, J.F., 1991, Mol. Cell Biol. 11, 2887-2895.
70. Rosenfeld, R., and Margalit, H., 1993, J. Biomol. Struc. Dynamic. 11, 557-570.
71. Rustgi, A.K., van T Veer, L., and Bernards, R., 1990, Proc. Natl. Acad. Sci. USA 87, 8707-8710.
72. Schuh, R., Aicher, W., Gaul, U., Cote S., Preiss, A., Maier, D., Seifert, E., Nauber, U., Schroder, C, Kemler, R., and Jackie, H., 1986, Cell 47, 1025-1032.
73. Schultz, S.C., Schields, G.C., and Steitz, T.A., 1991, Science 253, 1001-1007.
74. Seeman, N.C., Rosenberg, J.M., amd Rich, A., 1976, Proc. Natl. Acad. Sci. USA 73, 803-808.
75. Sham, M.H., Vesque, C, Nonchev, S., Marshall, H., Frain, M., Gupta, R.D., Whiting, J., Wikinson, D., Charnay, P., and Krumlauf, R., 1993, Cell 72, 183-196.
76. Shea, M.J., King, D.L., Conboy, M.J., Mariani, B.D., and Kafatos, F.C., 1990, Genes Develop. 4, 1128-1140.
77. Shi, Y., Seto, E., Chang, L.-S., and Shenk, T., 1991, Cell 67, 377-388.
78. Spana, C, and Corces, V.G., 1990, Genes Develop. 4, 1505-1515.
79. Stanojevic, D., Hoey, T., and Levine, M., 1989, Nature 341, 331-335.
80. Suzuki, M., 1994, Structure 2, 317-327.
81. Suzuki, M., 1994, Proc. Japan Acad. B70, in press.
82. Suzuki, M., and Chothia, L., 1994, Proc. Japan Acad. B70, 58-61.
83. Suzuki, M., and Vagi, N., 1994a, Proc. Japan Acad. B70, 62-66.
84. Suzuki, M., and Yagi, N., 1994b, Proc. Natl. Acad. Sci. USA, in press.
85. Takatsugi, H., Mori, M., Benefey, P.N., Ren, L., and Chua, N.-H., 1992, EMBO J. 11, 241-249.
86. Tebb, G., Mol J.T., Dowzer, C, and Nasmyth, K., 1993, Genes Develop. 7, 517-528.
87. Thukral, S.K., Eisen, A., and Young, E.T., 1991, Mol. Cell Biol. 11, 1566-1577.
88. Tony Ip, Y., Park, R.E., Kosman, D., Bier, E., and Levine, M., 1992, Genes and Develop. 6, 1728-1739.
89. Treisman, J., and Desplan, C, 1989, Nature 341, 335-337.
90. Van T Veer, L., Lutz, P.M., Isselbacher, K.J., and Bernarda, R., 1992, Proc. Natl. Acad. Sci. USA 89, 8971-8975.
91. Vincent, A., Colot, H.V., and Rosbash, M., 1985, J. Mol. Biol. 186, 149-166.
92. Wu, C, Mak, C.-H., Dear, N., Boehm, T., Foroni, L., and Rabbits, T.H., 1993, Nucleic Acids Res. 21, 5067-5073.
93. Zarkower, D., and Hodgkin, J., 1992, Cell 70, 237-249.
94. Zarkower, D., and Hodgkin, J., 1993, Nucl Acids Res. 21, 3691-3698.
95. Zhu, H., Nguyen, V.T.B., Brown, A.B., Pourhosseini, A., Garcia, A.V., Van Bilsen, M., and Chien, K.R., 1993, Mol. Cell Biol. 13, 4432-4444.
96. Zuo, P., Stanojevic, D., Colgan, J., Han, K., Levine, M., and Manley, J.L., 1991, Genes Develop. 5, 254-264.