Proteins in a DNA world: Expression systems for their study

Revista de Investigacion Clinica

Volumn 58, Issue 1, 2006, Pages 47-55

  Reyes Ruiz, Jorge Mauricio ^a   Barrera Saldaña, Hugo Alberto ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSIDAD AUTÓNOMA DE NUEVO LEÓN   (Mexico)

Author keywords

Bioreactors; Expression systems; Functional proteomics; Protein purifications

Indexed keywords

DNA; PROTEIN; RECOMBINANT PROTEIN;

BACTERIUM; BIOREACTOR; CELL FREE SYSTEM; CELL FUNCTION; DNA MODIFICATION; GENE EXPRESSION SYSTEM; HUMAN; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PLANT; PROCESS DESIGN; PROCESS DEVELOPMENT; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN PURIFICATION; PROTEIN STRUCTURE; PROTEIN SYNTHESIS; REVIEW; SPECIES; TANDEM MASS SPECTROMETRY; TRANSGENICS; WESTERN BLOTTING; X RAY ANALYSIS; YEAST;

AMINO ACID SEQUENCE; ANIMALS; ANIMALS, GENETICALLY MODIFIED; BACTERIA; BIOREACTORS; CATTLE; CELL-FREE SYSTEM; CELLS, CULTURED; CHICKENS; DRUG DESIGN; GENE EXPRESSION; GENETIC TECHNIQUES; HUMANS; INSECTS; MAMMALS; MOLECULAR SEQUENCE DATA; PLANTS; PLANTS, GENETICALLY MODIFIED; PROTEOMICS; RECOMBINANT FUSION PROTEINS; STRUCTURE-ACTIVITY RELATIONSHIP; YEASTS;

EID: 33744984209     PISSN: 00348376     EISSN: 00348376     Source Type: Journal    
DOI: None     Document Type: Review

References (59)

1. Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. Initial sequencing and analysis of the human genome. Nature 2001; 409: 860-921:
2. The Proteome Society www.proteome.org
3. Ward SJ. Impact of genomics in drug discovery. Biotechniques 2001; 31: 626.
4. Rai M, Padh H. Expression systems for production of heterologous proteins. Curr Sci 2001; 80: 1121-8.
5. Panda AK. Bioprocessing of therapeutic proteins from the inclusion bodies of Escherichia coli. Adv Biochem Eng Biotechnol 2003; 85: 43-93.
6. Kurland CG. Codon bias and gene expression. FEBS Lett 1991; 285: 165-9.
7. Dong H, Nilsson L, Kurland CG. Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. J Mol Biol 1996; 260: 649-63.
8. Humphreys DP, Sehdev M, Chapman AP, Ganesh R, Smith BJ, King LM, Glover DJ, Reeks DG, Stephens PE. High-level periplasmic expression in Escherichia coli using a eukaryotic signal peptide: importance of codon usage at the 5′ end of the coding sequence. Protein Expr Purif 2000; 20: 252-64.
9. Del Tito BJ Jr, Ward JM, Hodgson J, Gershater CJ, Edwards H, Wysocki LA, Watson FA, Sathe G, Kane JF. Effects of a minor isoleucyl tRNA on heterologous protein translation in Escherichia coli. J Bacteriol 1995; 177: 7086-91.
10. McNulty DE, Claffee BA, Huddleston MJ, Kane JF. Mistranslational errors associated with the rare arginine codon CGG in Escherichia coli. Protein Expr Purif 2003; 27: 365-74.
11. Novagen www.novagen.com
12. Stratagene www.stratagene.com
13. Newman JR, Fuqua C. Broad-host-range expression vectors that carry the L-arabinose-inducible Escherichia coli ara-BAD promoter and the araC regulator. Gene 1999; 227: 197-203.
14. Kuczynska-Wisnik D, Laskowska E, Taylor A. Transcription of the ibpB heat-shock gene is under control of sigma(32)-and sigma(54)-promoters, a third regulon of heat-shock re-sponse. Biochem Biophys Res Commun 2001; 284: 57-64.
15. Schallmey M, Singh A, Ward OP. Developments in the use of Bacillus species for industrial production. Can J Microbiol 2004; 50: 1-17.
16. de Vos WM. Gene expression systems for lactic acid bacteria. Curr Opin Biotechnol 1999; 2: 289-95.
17. Cereghino GP, Cregg JM. Applications of yeast in biotechnology: protein production and genetic analysis. Curr Opin Biotechnol 1999; 10: 422-7.
18. Brake AJ. Alpha-factor leader-directed secretion of heterologous proteins from yeast. Methods Enzymol 1990; 185: 408-21.
19. Buckholz RG, Gleeson MA. Foreign gene expression in yeast: a review. Bio-Technology 1991; 9: 1067-72.
20. Romanos MA, Scorer CA, Clare JJ. Recombinant DNA technology and heterologous gene expression in yeasts. Yeast 1991; 8: 423-88.
21. Cereghino GP, Cereghino JL, Ilgen C, Cregg JM. Production of recombinant proteins in fermenter cultures of the yeast Pichia pastoris. Curr Opin Biotechnol 2002; 13: 329-32.
22. Gemmill TR, Trimble RB. Overview of N- and O-linked oligosaccharide structures found in various yeast species. Biochim Biophys Acta 1999; 1426: 227-37.
23. Rudd PM, Elliott T, Cresswell P, Wilson IA, Dwek RA. Roles for Glycosylation in the Immune system. Science 2001; 291: 2370-6.
24. Helenius A, Aebi M. Intracellular functions of N-linked glycans. Science 2001; 291: 2364-9.
25. Davis TR, Wickham TJ, McKenna KA, Granados RR, Shuler ML, Wood HA. Comparative recombinant protein production of eight insect cell lines. In vitro Cell Dev Biol 1993; 29A: 388-90.
26. Ikonomou L, Schneider YJ, Agathos SN. Insect cell culture for industrial production of recombinant proteins. Appl Microbiol Biotechnol 2003; 62: 1-20.
27. Joosten CE, Park TH, Shuler ML. Effect of silkworm hemolymph on N-linked glycosylation in two Trichoplusia ni insect cell lines. Biotechnol Bioeng 2003; 83: 695-705.
28. Invitrogen www.invitrogen.com
29. Benting J, Lecat S, Zacchetti D, Simons K. Protein expression in Drosophila Schneider cells. Anal Biochem 2000; 278: 59-68.
30. Park JH, Kim HY, Han KH, Chung IS. Optimization of transfection conditions for expression of green fluorescent protein in Drosophila melanogaster S2 cells. Enzyme Microb Technol 1999; 25: 558-63.
31. Smutzer G. Cell-free transcription and translation. Scientist 2001; 15: 22.
32. Spirin AS, Baranov VI, Ryabova LA, Ovodov SY, Alakhov YB. A continuous cell-free translation system capable of producing polypeptides in high yield. Science 1988; 242: 1162-4.
33. Sawasaki T, Hasegawa Y, Tsuchimochi M, Kasahara Y, Endo Y. Construction of an efficient expression vector for coupled transcription/translation in a wheat germ cell-free system. Nucleic Acids Symp Ser 2000; 44: 9-10.
34. Roche www.roche-applied-science.com
35. Betton JM. Rapid translation system (RTS): a promising alternative for recombinant protein production. Curr Protein Pept Sci 2003; 4: 73-80.
36. Yusibov V, Hooper DC, Spitsin SV, Fleysh N, Kean RB, Mikheeva T, Deka D, Karasev A, Cox S, Randall J, Koprowski H. Expression in plants and immunogenicity of plant virus-based experimental rabies vaccine. Vaccine 2002; 20: 3155-64.
37. Samyn-Petit B, Wajda Dubos JP, Chirat F, Coddeville B, Demaizieres G, Farrer S, Slomianny MC, Theisen M, Delannoy P. Comparative analysis of the site-specific N-glycosylation of human lactoferrin produced in maize and tobacco plants. Eur J Biochem 2003; 270: 3235-42.
38. Ohya K, Matsumura T, Ohashi K, Onuma M, Sugimoto C. Expression of two subtypes of human IFN-alpha in transgenic potato plants. J Interferon Cytokine Res 2001; 8: 595-602.
39. van Berkel PH, Welling MM, Geerts M, van Veen HA, Ravensbergen B, Salaheddine M, Pauwels EK, Pieper F, Nuijens JH, Nibbering PH. Large scale production of recombinant human lactoferrin in the milk of transgenic cows. Nat Biotechnol 2002; 5: 484-7.
40. Gilbert AB. Egg albumen and its formation. Physiology and Biochemistry of the Domestic Fowl (Bell, D.J., Free, B.M. eds), 1984; pp. 1291-1329, Academic Press.
41. Ivarie R. Avian transgenesis: progress towards the promise. Trends Biotechnol 2003; 21: 14-9.
42. Tranter HS, Board RB. The antimicrobial defense of avian eggs: biological perspective and chemical basis. J Appl Biochem 1982; 4: 295-338.
43. Harvey AJ, Speksnijder G, Baugh LR, Morris JA, Ivarie R. Expression of exogenous protein in the egg white of transgenic chickens. Nat Biotechnol 2002; 20: 396-9.
44. Harvey AJ, Speksnijder G, Baugh LR, Morris JA, Ivarie R. Consistent production of transgenic chickens using replication-deficient retroviral vectors and high-throughput screening procedures. Poult Sci 2002; 81: 202-12.
45. Love J, Gribbin C, Mather C, Sang H. Transgenic birds by DNA microinjection. Biotechnology 1994; 12: 60-3.
46. Lampe DJ, et al. Factors affecting transposition of the Himar1 mariner transposon in vitro. Genetics 1998; 149: 179-87.
47. Terpe K. Overview of tag protein fusions: from molecular and biochemical fundamentals to commercial systems. Appl Microbiol Biotechnol 2003; 60: 523-33.
48. Carrington JC, Dougherty WG. A viral cleavage site cassette: identification of amino acid sequences required for tobacco etch virus polyprotein processing. Proc Natl Acad Sci USA 1988; 85: 3391-5.
49. Dougherty WG, Carrington JC, Cary SM, Parks TD. Biochemical and mutational analysis of a plant virus polyprotein cleavage site. EMBO J 1988; 7: 1281.7.
50. Dougherty WG, Parks TD, Cary SM, Bazan JF, Fletterick RJ. Characterization of the catalytic residues of the tobacco etch virus 49-kDa proteinase. Virology 1989; 172: 302-10.
51. Nagai K, Thogersen HC. Generation of beta-globin by sequence-specific proteolysis of a hybrid protein produced in Escherichia coli. Nature 1984; 309: 810-2.
52. Chang JY, Alkan SS, Hilschmann N, Braun DG. Thrombin specificity. Selective cleavage of antibody light chains at the joints of variable with joining regions and joining with constant regions. Eur J Biochem 1985; 151: 225-30.
53. Haun RS, Moss J. Ligation-independent cloning of glutathione fusion genes for expression in Escherichia coli. Gene 1992; 112: 37-43.
54. Xu M-Q, Paulus H, Chong S. Fusions to self-splicing inteins for protein purification. Methods Enzymol 2000; 236: 376-418.
55. Gevaert K, Vandekerckhove J. Protein identification methods in proteomics. Electrophoresis 2000, 21: 1145-54.
56. Chalmers MJ, Gaskell SJ. Advances in mass spectrometry for proteome analysis. Curr Opin Biotechnol 2000; 11: 384-90.
57. Yates 3rd JR. Mass spectroscopy. From genomics to proteomics. Trends Genet 2000; 16: 5-8.
58. McRee DE. Practical protein crystallography. San Diego: Academic Press, c1993.
59. Stout GH, Jensen LH. X-ray structure determination: a practical guide. New York: Wiley, c1989.