-
1
-
-
0028109886
-
Conservation and prediction of solvent accessibility in protein families
-
Rost B, Sander C. Conservation and prediction of solvent accessibility in protein families. Proteins 1994;20:216-226.
-
(1994)
Proteins
, vol.20
, pp. 216-226
-
-
Rost, B.1
Sander, C.2
-
2
-
-
0025039476
-
Predicting surface exposure of amino acids from protein sequence
-
Hobrook S, Mushal S, Kim S. Predicting surface exposure of amino acids from protein sequence. Protein Eng 1990;3:659-665.
-
(1990)
Protein Eng
, vol.3
, pp. 659-665
-
-
Hobrook, S.1
Mushal, S.2
Kim, S.3
-
3
-
-
0032147008
-
Easy method to predict solvent accessibility from multiple protein sequence alignments
-
Pascarella S, De Persio R, Bossa F, Argos P. Easy method to predict solvent accessibility from multiple protein sequence alignments. Proteins 1999;32:190-199.
-
(1999)
Proteins
, vol.32
, pp. 190-199
-
-
Pascarella, S.1
De Persio, R.2
Bossa, F.3
Argos, P.4
-
4
-
-
0035189668
-
New method for accurate prediction of solvent accessibility from protein sequence
-
Li X, Pan X.-M. New method for accurate prediction of solvent accessibility from protein sequence. Proteins 2001;42:1-5.
-
(2001)
Proteins
, vol.42
, pp. 1-5
-
-
Li, X.1
Pan, X.-M.2
-
5
-
-
0036568293
-
Prediction of coordination number and relative solvent accessibility in proteins
-
Pollastri G, Baldi P, Fariselli P, Casadio R. Prediction of coordination number and relative solvent accessibility in proteins. Proteins 2002;47:142-153.
-
(2002)
Proteins
, vol.47
, pp. 142-153
-
-
Pollastri, G.1
Baldi, P.2
Fariselli, P.3
Casadio, R.4
-
6
-
-
0036303121
-
NETASA: Neural network based prediction of solvent accessibility
-
Ahmad S, Gromiha M. M. NETASA: neural network based prediction of solvent accessibility. Bioinformatics 2002;18:819-824.
-
(2002)
Bioinformatics
, vol.18
, pp. 819-824
-
-
Ahmad, S.1
Gromiha, M.M.2
-
7
-
-
26444473604
-
Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure
-
Garg A, Kaur H, Raghava G. Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure. Proteins 2005;61:318-324.
-
(2005)
Proteins
, vol.61
, pp. 318-324
-
-
Garg, A.1
Kaur, H.2
Raghava, G.3
-
8
-
-
15544379998
-
Solvent accessibility in native and isolated domain environments: General features and implications to interface predictability
-
Raih M, Ahmad S, Zheng R, R. M. Solvent accessibility in native and isolated domain environments: general features and implications to interface predictability. Biophys Chem 2005;114:63-69.
-
(2005)
Biophys Chem
, vol.114
, pp. 63-69
-
-
Raih, M.1
Ahmad, S.2
Zheng, R.3
M, R.4
-
9
-
-
0037103004
-
Prediction of protein solvent accessibility using support vector machines
-
Yuan Z, Burrage K, Mattick J. S. Prediction of protein solvent accessibility using support vector machines. Proteins 2002;48:566-570.
-
(2002)
Proteins
, vol.48
, pp. 566-570
-
-
Yuan, Z.1
Burrage, K.2
Mattick, J.S.3
-
10
-
-
6344258643
-
Prediction of protein accessible surface areas by support vector regression
-
Yuan Z, Huang B. Prediction of protein accessible surface areas by support vector regression. Proteins 2004;57:558-564.
-
(2004)
Proteins
, vol.57
, pp. 558-564
-
-
Yuan, Z.1
Huang, B.2
-
11
-
-
1042268067
-
Prediction of protein relative solvent accessibility with support vector machines and long-range interaction 3D local descriptor
-
Kim H, Park H. Prediction of protein relative solvent accessibility with support vector machines and long-range interaction 3D local descriptor. Proteins 2004;54:557-562.
-
(2004)
Proteins
, vol.54
, pp. 557-562
-
-
Kim, H.1
Park, H.2
-
12
-
-
1442310611
-
Improvement in prediction of solvent accessibility by probability profiles
-
Gianese G, Bossa F, Pascarella S. Improvement in prediction of solvent accessibility by probability profiles. Protein Eng 2003;16: 987-992.
-
(2003)
Protein Eng
, vol.16
, pp. 987-992
-
-
Gianese, G.1
Bossa, F.2
Pascarella, S.3
-
13
-
-
0035283141
-
Prediction of protein surface accessibility with information theory
-
Naderi-Manesh H, Sadeghi M, Arab S, Movahedi AAM. Prediction of protein surface accessibility with information theory. Proteins 2001;42:452-459.
-
(2001)
Proteins
, vol.42
, pp. 452-459
-
-
Naderi-Manesh, H.1
Sadeghi, M.2
Arab, S.3
Movahedi, A.A.M.4
-
14
-
-
0033768867
-
Predicting residue solvent accessibility from protein sequence by considering the sequence environment
-
Carugo O. Predicting residue solvent accessibility from protein sequence by considering the sequence environment. Protein Eng 2000;13:607-609.
-
(2000)
Protein Eng
, vol.13
, pp. 607-609
-
-
Carugo, O.1
-
15
-
-
0029885547
-
Predicting solvent accessibility: Higher accuracy using bayesian statistics and optimized residue substitution classes
-
Thompson M, Goldstein R. Predicting solvent accessibility: higher accuracy using bayesian statistics and optimized residue substitution classes. Proteins 1996;25:38-47.
-
(1996)
Proteins
, vol.25
, pp. 38-47
-
-
Thompson, M.1
Goldstein, R.2
-
17
-
-
0037340834
-
Real value prediction of solvent accessibility from amino acid sequence
-
Ahmad S, Gromiha M. M, Sarai A. Real value prediction of solvent accessibility from amino acid sequence. Proteins 2003;50:629-635.
-
(2003)
Proteins
, vol.50
, pp. 629-635
-
-
Ahmad, S.1
Gromiha, M.M.2
Sarai, A.3
-
18
-
-
4043052866
-
Accurate prediction of solvent accessibility using neural networks-based regression
-
Adamczak R, Porollo A, Meller J. Accurate prediction of solvent accessibility using neural networks-based regression. Proteins 2004;56:753-767.
-
(2004)
Proteins
, vol.56
, pp. 753-767
-
-
Adamczak, R.1
Porollo, A.2
Meller, J.3
-
19
-
-
33646856527
-
-
Natick, MA: Mathworks, Inc.
-
Mathworks Matlab. Natick, MA: Mathworks, Inc.; 1999.
-
(1999)
Mathworks Matlab
-
-
-
20
-
-
0036838311
-
Distance-scaled, finite ideal-gas reference state improves structure derived potentials of mean force for structure selection and stability prediction
-
Zhou H, Zhou Y. Distance-scaled, finite ideal-gas reference state improves structure derived potentials of mean force for structure selection and stability prediction. Protein Sci 2002;11:2714-2726.
-
(2002)
Protein Sci
, vol.11
, pp. 2714-2726
-
-
Zhou, H.1
Zhou, Y.2
-
21
-
-
0345827721
-
Quantifying the effect of burial of amino acid residues on protein stability
-
Zhou H, Zhou Y. Quantifying the effect of burial of amino acid residues on protein stability. Proteins 2004;54:315-322.
-
(2004)
Proteins
, vol.54
, pp. 315-322
-
-
Zhou, H.1
Zhou, Y.2
-
22
-
-
2542631929
-
Single-body residue-level knowledge-based energy score combined with sequence-profile and secondary structure information for fold recognition
-
Zhou H, Zhou Y. Single-body residue-level knowledge-based energy score combined with sequence-profile and secondary structure information for fold recognition. Proteins 2004;55:1005-1013.
-
(2004)
Proteins
, vol.55
, pp. 1005-1013
-
-
Zhou, H.1
Zhou, Y.2
-
23
-
-
30344456694
-
3 servers in CASP 6
-
3 servers in CASP 6. Proteins 2005;(Suppl 7) 152-156.
-
(2005)
Proteins
, Issue.SUPPL. 7
, pp. 152-156
-
-
Zhou, H.1
Zhou, Y.2
-
24
-
-
0015866154
-
Environment and exposure to solvent of protein atoms, lysozyme and insulin
-
Shrake A, Rupley J. A. Environment and exposure to solvent of protein atoms, lysozyme and insulin. J Mol Biol 1973;79:351-371.
-
(1973)
J Mol Biol
, vol.79
, pp. 351-371
-
-
Shrake, A.1
Rupley, J.A.2
-
25
-
-
0036773411
-
Quantification of protein surfaces, volumes and atom-atom contacts using a constrained voronoi procedure
-
McConkey B, Sobolev V, Kdelman M. Quantification of protein surfaces, volumes and atom-atom contacts using a constrained voronoi procedure. Bioinformatics 2002;18:1365-1373.
-
(2002)
Bioinformatics
, vol.18
, pp. 1365-1373
-
-
McConkey, B.1
Sobolev, V.2
Kdelman, M.3
-
26
-
-
0034663597
-
Application of multiple sequence alignment profiles to improve protein secondary structure prediction
-
Cuff J, Barton G. Application of multiple sequence alignment profiles to improve protein secondary structure prediction. Proteins 2000;40:502-511.
-
(2000)
Proteins
, vol.40
, pp. 502-511
-
-
Cuff, J.1
Barton, G.2
-
27
-
-
0032960853
-
Self-consistent estimation of interresidue protein contact energies based on an equilibrium mixture approximation of residues
-
Miyazawa S, Jernigan R. Self-consistent estimation of interresidue protein contact energies based on an equilibrium mixture approximation of residues. Proteins 1999;34:49-68.
-
(1999)
Proteins
, vol.34
, pp. 49-68
-
-
Miyazawa, S.1
Jernigan, R.2
-
28
-
-
0033459568
-
The bottom line for prediction of residue solvent accessibility
-
Richardson C, Barlow D. The bottom line for prediction of residue solvent accessibility. Protein Eng 1999;12:1051-1054.
-
(1999)
Protein Eng
, vol.12
, pp. 1051-1054
-
-
Richardson, C.1
Barlow, D.2
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